CF417530

Overview
NameCF417530
Unique NameCF417530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PAG2_BOVIN (Pregnancy-associated glycoprotein 2 OS=Bos taurus GN=PAG2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGA 221
            +FGGVD  +YKGE  ++PV++  +WQ  M ++ ++G  T  CS GC A+ D+GTS++ GPT ++T I+  + A
Sbjct:  218 MFGGVDHRYYKGELNWIPVSQTSHWQISMNNISMNGTVTA-CSCGCEALLDTGTSMIYGPTKLVTNIHKLMNA 289          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPC_MACFU (Gastricsin (Fragment) OS=Macaca fuscata fuscata GN=PGC PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.360e-12
Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTIL 281
            VFGGVD   Y G+  + PVT++ YWQ  + + LI G+ +G+CS GC AI D+GTSLL  P   ++ +  A GA     QE     D+YG+ ++
Sbjct:  215 VFGGVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQATGA-----QE-----DEYGQFLV 297          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPC_HUMAN (Gastricsin OS=Homo sapiens GN=PGC PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.360e-12
Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTIL 281
            VFGGVD   Y G+  + PVT++ YWQ  + + LI G+ +G+CS GC AI D+GTSLL  P   ++ +  A GA     QE     D+YG+ ++
Sbjct:  226 VFGGVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQATGA-----QE-----DEYGQFLV 308          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: CATD_CHICK (Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.360e-12
Identity = 37/108 (34.26%), Postives = 58/108 (53.70%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEMLIAETQPQKICSQ 326
            + GG DP +Y G+ ++V VT+K YWQ  M  V +    T  C  GC AI D+GTSL+ GPT  + ++  AIGA  +I  +     D+     +  L+   +P ++  +
Sbjct:  234 LLGGTDPKYYSGDFSWVNVTRKAYWQVHMDSVDVANGLT-LCKGGCEAIVDTGTSLITGPTKEVKELQTAIGAKPLIKGQYVISCDKISSLPVVTLMLGGKPYQLTGE 340          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: CATD_CHIHA (Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.776e-12
Identity = 33/80 (41.25%), Postives = 48/80 (60.00%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQE 242
            + GG DP +Y G+  YV VT++ YWQ  +  + + G+    C+ GC AI DSGTSL+ GP+  +  +  AIGA  +I  E
Sbjct:  232 LLGGTDPKYYTGDFNYVNVTRQAYWQIRVDSMAV-GDQLSLCTGGCEAIVDSGTSLITGPSVEVKALQKAIGAFPLIQGE 310          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPC_MONDO (Gastricsin OS=Monodelphis domestica GN=PGC PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.319e-12
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGA 221
            + GGVDP  Y G+ T+ PVT++ YWQ  + +  I  + TG+CS GC AI D+GT LLA P   ++    A GA
Sbjct:  229 ILGGVDPQLYSGQITWTPVTQEVYWQIGIEEFAIGNQATGWCSQGCQAIVDTGTFLLAVPQQYMSAFLQATGA 301          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPC_CAVPO (Gastricsin OS=Cavia porcellus GN=PGC PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.319e-12
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGA 221
            + GGVD   Y G+  + PVT++ YWQ  +   LIDG  +G+CS GC  I D+GTSLL  P+  ++ +  AIGA
Sbjct:  232 ILGGVDESLYTGDIYWTPVTQELYWQIGIEGFLIDGSASGWCSRGCQGIVDTGTSLLTVPSDYLSTLVQAIGA 304          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PAG_HORSE (Pregnancy-associated glycoprotein OS=Equus caballus GN=PAG PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.319e-12
Identity = 37/80 (46.25%), Postives = 46/80 (57.50%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQE 242
            +FGGVDP +Y GE  +VPV+K  YWQ  M  + I+G+    C  GC AI D+GTSLL GP   +  I   I A    S E
Sbjct:  226 MFGGVDPSYYTGELHWVPVSKPLYWQISMDSISINGKVIA-CDGGCQAIVDTGTSLLLGPQDAVLNIQEIIQARRSTSGE 304          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: CHYM_CALJA (Chymosin OS=Callithrix jacchus GN=CYM PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.319e-12
Identity = 37/86 (43.02%), Postives = 49/86 (56.98%), Query Frame = 3
Query:    9 GGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS----GVISQECKTL 254
            G +DP +Y G   ++PVT + YWQF +  V +DG     C  GC AI D+GTS+L GP + I  I  AIGA+    G    +C TL
Sbjct:  227 GAIDPSYYTGSLHWIPVTVQEYWQFTVDSVTVDGVVVA-CDGGCQAILDTGTSMLVGPGSDIFNIQQAIGATEGQYGEFDIDCGTL 311          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: CATE_RANCA (Cathepsin E OS=Rana catesbeiana GN=CTSE PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.319e-12
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIG---ASGVISQECKTL 254
            V GG D   + G+  +VP+T +GYWQ ++  + + G+   +CS GC AI D+GTSL+ GP+  I Q+ + IG    +G     C TL
Sbjct:  228 VLGGFDTSRFSGQLNWVPITVQGYWQIQVDSIQVAGQVI-FCSDGCQAIVDTGTSLITGPSGDIEQLQNYIGVTNTNGEYGVSCSTL 313          
The following BLAST results are available for this feature:
BLAST of CF417530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
PAG2_BOVIN7.971e-1342.47Pregnancy-associated glycoprotein 2 OS=Bos taurus ... [more]
PEPC_MACFU1.360e-1241.94Gastricsin (Fragment) OS=Macaca fuscata fuscata GN... [more]
PEPC_HUMAN1.360e-1241.94Gastricsin OS=Homo sapiens GN=PGC PE=1 SV=1[more]
CATD_CHICK1.360e-1234.26Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1[more]
CATD_CHIHA1.776e-1241.25Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV... [more]
PEPC_MONDO2.319e-1245.21Gastricsin OS=Monodelphis domestica GN=PGC PE=2 SV... [more]
PEPC_CAVPO2.319e-1245.21Gastricsin OS=Cavia porcellus GN=PGC PE=2 SV=1[more]
PAG_HORSE2.319e-1246.25Pregnancy-associated glycoprotein OS=Equus caballu... [more]
CHYM_CALJA2.319e-1243.02Chymosin OS=Callithrix jacchus GN=CYM PE=1 SV=1[more]
CATE_RANCA2.319e-1239.08Cathepsin E OS=Rana catesbeiana GN=CTSE PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-460 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417530 ID=CF417530; Name=CF417530; organism=Citrus sinensis; type=EST; length=660bp
TTGTGTTTGGTGGGGTTGATCCTGATCATTACAAGGGTGAACACACATAT
GTGCCAGTGACTAAGAAAGGCTATTGGCAGTTTGAAATGGGTGATGTCCT
GATTGATGGTGAAACAACTGGATATTGTTCCACTGGTTGTAACGCAATTG
CTGATTCTGGAACCTCGTTGTTGGCGGGCCCAACAACCATAATTACACAA
ATTAATCATGCCATTGGAGCTTCTGGTGTCATAAGCCAAGAATGCAAGAC
TCTGGTTGACCAATATGGAAAAACCATATTGGAAATGCTGATAGCTGAGA
CACAACCACAAAAGATCTGCTCTCAGATGGGTCTATGTACTTTTGATGGG
ACTCGAGGTTTTAGCATGGGAATTGAGAGTGTCATAGATAAGAGCTCAGA
CAAGTCATCTGATGGTGTGCATGACTCTGCTATGTGCTCTGCTTGTGAGA
TGGCGGTCATATGGATGCAGAACAAGCTGAGGAGAAATGAGACAGCAGAT
CAAATCTTGAATTATGTAAATCAGCTTTGTGACCGTCTGCCCAGTCCAAA
TGGAGAATCANCTGTTGATTGTGACAATTTATCTTCCATGCCCAATGTTT
CATTTACNATTGGNGGCAAAGTATTTGACCTTGCACCGAATGAGTATGTT
CTTGAAGTGG
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