CF417530

Overview
NameCF417530
Unique NameCF417530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPC_CALJA (Gastricsin OS=Callithrix jacchus GN=PGC PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.029e-12
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTIL 281
            +FGGVD   Y G+  + PVT++ YWQ  + + LI G+ +G+CS GC AI D+GTSLL  P   ++    A GA     QE     D+YG+ ++
Sbjct:  226 IFGGVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSAFLEATGA-----QE-----DEYGQFLV 308          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPC_RABIT (Gastricsin OS=Oryctolagus cuniculus GN=PGC PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.956e-12
Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGKTILEMLIAETQP 308
            V GGVD   Y G+  + PVT++ YWQ  + + LI  E +G+CS GC AI D+GTSLL  P   ++ +  A GA     QE     ++YG+ +++    E+ P
Sbjct:  226 VLGGVDSSLYTGDIYWAPVTRELYWQIGIDEFLISSEASGWCSQGCQAIVDTGTSLLTVPQEYMSDLLEATGA-----QE-----NEYGEFLVDCDSTESLP 317          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: CATD_MOUSE (Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.956e-12
Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQE 242
            + GG D  +Y GE +Y+ VT+K YWQ  M  + +  E T  C  GC AI D+GTSLL GP   + ++  AIGA  +I  E
Sbjct:  244 MLGGTDSKYYHGELSYLNVTRKAYWQVHMDQLEVGNELT-LCKGGCEAIVDTGTSLLVGPVEEVKELQKAIGAVPLIQGE 322          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: CATD_RAT (Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.167e-12
Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQE 242
            + GG D  +Y GE +Y+ VT+K YWQ  M  + +  E T  C  GC AI D+GTSLL GP   + ++  AIGA  +I  E
Sbjct:  241 MLGGTDSRYYHGELSYLNVTRKAYWQVHMDQLEVGSELT-LCKGGCEAIVDTGTSLLVGPVDEVKELQKAIGAVPLIQGE 319          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: CHYM_SHEEP (Chymosin OS=Ovis aries GN=CYM PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 37/86 (43.02%), Postives = 48/86 (55.81%), Query Frame = 3
Query:    9 GGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS----GVISQECKTL 254
            G +DP +Y G   +VPVT + YWQF +  V I G     C  GC AI D+GTS L GP++ I  I  AIGA+    G    +C +L
Sbjct:  227 GAIDPSYYTGSLHWVPVTLQKYWQFTVDSVTISGAVVA-CEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGEFDIDCDSL 311          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: CATD_CANFA (Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11
Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQE 242
            + GG D  +YKG  +Y+ VT+K YWQ  M  V + G +   C  GC AI D+GTSL+ GP   + ++  AIGA  +I  E
Sbjct:  244 MLGGTDSKYYKGPLSYLNVTRKAYWQVHMEQVDV-GSSLTLCKGGCEAIVDTGTSLIVGPVDEVRELQKAIGAVPLIQGE 322          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: CHYM_BOVIN (Chymosin OS=Bos taurus GN=CYM PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.963e-11
Identity = 34/72 (47.22%), Postives = 43/72 (59.72%), Query Frame = 3
Query:    9 GGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 224
            G +DP +Y G   +VPVT + YWQF +  V I G     C  GC AI D+GTS L GP++ I  I  AIGA+
Sbjct:  227 GAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVVA-CEGGCQAILDTGTSKLVGPSSDILNIQQAIGAT 297          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPA_RHIFE (Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11
Identity = 31/74 (41.89%), Postives = 46/74 (62.16%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 224
            +FGG+D  ++ G   +VP++ + YWQ  +  + ++G+    CS  C AI D+GTSLL+GPT  I  I   IGAS
Sbjct:  226 MFGGIDSSYFTGNLNWVPLSSETYWQITVDSITMNGQVIA-CSGSCQAIVDTGTSLLSGPTNAIASIQGYIGAS 298          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: NAPSA_MOUSE (Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11
Identity = 34/72 (47.22%), Postives = 43/72 (59.72%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIG 218
            V GG DP HY    T++PVT   YWQ  M  V + G     C+ GC+AI D+GTSL+ GP+  I  +N AIG
Sbjct:  229 VLGGSDPAHYVPPLTFIPVTIPAYWQVHMESVKV-GTGLSLCAQGCSAILDTGTSLITGPSEEIRALNKAIG 299          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: CATD_SHEEP (Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.349e-11
Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQE 242
            + GG D  +Y+G  TY  VT++ YWQ  M D L  G +   C  GC AI D+GTSL+ GP   + +++ AIGA  +I  E
Sbjct:  219 MLGGTDSKYYRGSLTYHNVTRQAYWQIHM-DQLDVGSSLTVCKGGCEAIVDTGTSLMVGPVDEVRELHKAIGAVPLIQGE 297          
The following BLAST results are available for this feature:
BLAST of CF417530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
PEPC_CALJA3.029e-1240.86Gastricsin OS=Callithrix jacchus GN=PGC PE=1 SV=1[more]
PEPC_RABIT3.956e-1238.24Gastricsin OS=Oryctolagus cuniculus GN=PGC PE=2 SV... [more]
CATD_MOUSE3.956e-1243.75Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1[more]
CATD_RAT5.167e-1243.75Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1[more]
CHYM_SHEEP1.151e-1143.02Chymosin OS=Ovis aries GN=CYM PE=2 SV=1[more]
CATD_CANFA1.503e-1142.50Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1[more]
CHYM_BOVIN1.963e-1147.22Chymosin OS=Bos taurus GN=CYM PE=1 SV=3[more]
PEPA_RHIFE2.564e-1141.89Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 ... [more]
NAPSA_MOUSE2.564e-1147.22Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1[more]
CATD_SHEEP3.349e-1142.50Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-460 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417530 ID=CF417530; Name=CF417530; organism=Citrus sinensis; type=EST; length=660bp
TTGTGTTTGGTGGGGTTGATCCTGATCATTACAAGGGTGAACACACATAT
GTGCCAGTGACTAAGAAAGGCTATTGGCAGTTTGAAATGGGTGATGTCCT
GATTGATGGTGAAACAACTGGATATTGTTCCACTGGTTGTAACGCAATTG
CTGATTCTGGAACCTCGTTGTTGGCGGGCCCAACAACCATAATTACACAA
ATTAATCATGCCATTGGAGCTTCTGGTGTCATAAGCCAAGAATGCAAGAC
TCTGGTTGACCAATATGGAAAAACCATATTGGAAATGCTGATAGCTGAGA
CACAACCACAAAAGATCTGCTCTCAGATGGGTCTATGTACTTTTGATGGG
ACTCGAGGTTTTAGCATGGGAATTGAGAGTGTCATAGATAAGAGCTCAGA
CAAGTCATCTGATGGTGTGCATGACTCTGCTATGTGCTCTGCTTGTGAGA
TGGCGGTCATATGGATGCAGAACAAGCTGAGGAGAAATGAGACAGCAGAT
CAAATCTTGAATTATGTAAATCAGCTTTGTGACCGTCTGCCCAGTCCAAA
TGGAGAATCANCTGTTGATTGTGACAATTTATCTTCCATGCCCAATGTTT
CATTTACNATTGGNGGCAAAGTATTTGACCTTGCACCGAATGAGTATGTT
CTTGAAGTGG
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