CF417530

Overview
NameCF417530
Unique NameCF417530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: CATD_HUMAN (Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.349e-11
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQE 242
            + GG D  +YKG  +Y+ VT+K YWQ  +  V +    T  C  GC AI D+GTSL+ GP   + ++  AIGA  +I  E
Sbjct:  246 MLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLT-LCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLIQGE 324          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: RENI_RAT (Renin OS=Rattus norvegicus GN=Ren1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11
Identity = 32/72 (44.44%), Postives = 43/72 (59.72%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIG 218
            V GG DP HY+G   YV ++K G WQ  M  V + G  T  C  GC A+ D+GTS ++GPT+ +  I  A+G
Sbjct:  238 VLGGSDPQHYQGNFHYVSISKAGSWQITMKGVSV-GPATLLCEEGCMAVVDTGTSYISGPTSSLQLIMQALG 308          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: NAPSA_HUMAN (Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 38/90 (42.22%), Postives = 49/90 (54.44%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQECKTLVDQYGK 272
            V GG DP HY    T+VPVT   YWQ  M  V + G     C+ GC AI D+GTSL+ GPT  I  ++ AIG   +++ E   L  +  K
Sbjct:  234 VLGGSDPAHYIPPLTFVPVTVPAYWQIHMERVKV-GPGLTLCAKGCAAILDTGTSLITGPTEEIRALHAAIGGIPLLAGEYIILCSEIPK 322          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: CATD_PIG (Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 33/80 (41.25%), Postives = 45/80 (56.25%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASGVISQE 242
            + GG+D  +YKG   Y  VT+K YWQ  M  V + G +   C  GC AI D+GTSL+ G    + ++  AIGA  +I  E
Sbjct:  181 MLGGIDSKYYKGSLDYHNVTRKAYWQIHMNQVAV-GSSLTLCKGGCEAIVDTGTSLIVGQPEEVRELGKAIGAVPLIQGE 259          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PEPAF_RABIT (Pepsin F OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGA 221
            + GGVDP +Y G+  +VPV++  YWQ  +  + ++GE  G C +GC  I D+GTSLL GP   +  I   I A
Sbjct:  226 MLGGVDPSYYSGDLHWVPVSRPLYWQLAVDRISMNGEAIG-CDSGCQGIVDTGTSLLIGPRDPVLNIQKIINA 297          
BLAST of CF417530 vs. ExPASy Swiss-Prot
Match: PAG2_PIG (Pregnancy-associated glycoprotein 2 OS=Sus scrofa GN=PAG2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 3
Query:    3 VFGGVDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAI 215
            +FGGVD  +YKG+  +VP+T+  YWQ  +  +   G   G C  GC AI D+GTS+L GP+  + +I+  I
Sbjct:  228 MFGGVDKKYYKGDLKWVPLTQTSYWQIALDRITCRGRVIG-CPRGCQAIVDTGTSMLHGPSKAVAKIHSLI 297          
The following BLAST results are available for this feature:
BLAST of CF417530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CATD_HUMAN3.349e-1141.25Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1[more]
RENI_RAT4.374e-1144.44Renin OS=Rattus norvegicus GN=Ren1 PE=2 SV=2[more]
NAPSA_HUMAN5.713e-1142.22Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1[more]
CATD_PIG5.713e-1141.25Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2[more]
PEPAF_RABIT9.744e-1142.47Pepsin F OS=Oryctolagus cuniculus PE=2 SV=1[more]
PAG2_PIG9.744e-1142.25Pregnancy-associated glycoprotein 2 OS=Sus scrofa ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-460 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417530 ID=CF417530; Name=CF417530; organism=Citrus sinensis; type=EST; length=660bp
TTGTGTTTGGTGGGGTTGATCCTGATCATTACAAGGGTGAACACACATAT
GTGCCAGTGACTAAGAAAGGCTATTGGCAGTTTGAAATGGGTGATGTCCT
GATTGATGGTGAAACAACTGGATATTGTTCCACTGGTTGTAACGCAATTG
CTGATTCTGGAACCTCGTTGTTGGCGGGCCCAACAACCATAATTACACAA
ATTAATCATGCCATTGGAGCTTCTGGTGTCATAAGCCAAGAATGCAAGAC
TCTGGTTGACCAATATGGAAAAACCATATTGGAAATGCTGATAGCTGAGA
CACAACCACAAAAGATCTGCTCTCAGATGGGTCTATGTACTTTTGATGGG
ACTCGAGGTTTTAGCATGGGAATTGAGAGTGTCATAGATAAGAGCTCAGA
CAAGTCATCTGATGGTGTGCATGACTCTGCTATGTGCTCTGCTTGTGAGA
TGGCGGTCATATGGATGCAGAACAAGCTGAGGAGAAATGAGACAGCAGAT
CAAATCTTGAATTATGTAAATCAGCTTTGTGACCGTCTGCCCAGTCCAAA
TGGAGAATCANCTGTTGATTGTGACAATTTATCTTCCATGCCCAATGTTT
CATTTACNATTGGNGGCAAAGTATTTGACCTTGCACCGAATGAGTATGTT
CTTGAAGTGG
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