CF417533

Overview
NameCF417533
Unique NameCF417533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: RL40_TRYCR (60S ribosomal protein L40 OS=Trypanosoma cruzi GN=FUS1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.734e-13
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 3
Query:  195 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 350
            ++EP+L ALA+KYN +K +CR+CYARL  RA NCRKK CGH + LR KKK++
Sbjct:    1 VMEPTLEALAKKYNWEKKVCRRCYARLPVRASNCRKKACGHCSNLRMKKKLR 52          
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.734e-13
Identity = 32/65 (49.23%), Postives = 49/65 (75.38%), Query Frame = 3
Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 197
            I ++++ +D I  +K ++++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG+
Sbjct:   13 IEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGGL 77          
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.046e-13
Identity = 31/64 (48.44%), Postives = 47/64 (73.44%), Query Frame = 3
Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            I L+++ +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG
Sbjct:   13 IELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76          
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.287e-12
Identity = 32/64 (50.00%), Postives = 48/64 (75.00%), Query Frame = 3
Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            I++E++ SD + ++K  +++KEGIPP QQRLIF GKQ++D  T+ D ++ +   LHLVL LRGG
Sbjct:   13 ISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76          
The following BLAST results are available for this feature:
BLAST of CF417533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RL40_TRYCR1.734e-1361.5460S ribosomal protein L40 OS=Trypanosoma cruzi GN=... [more]
NEDD8_DICDI1.734e-1349.23NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV... [more]
UBL1_SCHPO5.046e-1348.44Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]
RUB1_YEAST7.287e-1250.00NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-463 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417533 ID=CF417533; Name=CF417533; organism=Citrus sinensis; type=EST; length=527bp
CCATAACTCTCGAAGTCGAGAGCAGCGACACCATCGACAATGTCAAAGCT
AAGATTCAAGACAAGGAAGGAATTCCCCCGGATCAGCAGCGTCTCATCTT
CGCCGGAAAGCAGCTCGAAGATGGCCGTACCTTGGCTGATTACAATATTC
AGAAAGAATCCACTCTTCATTTGGTGCTGAGGCTTAGGGGAGGTATCATT
GAGCCTTCATTGATGGCTTTGGCTCGCAAATACAATCAGGATAAGATGAT
TTGCCGCAAATGTTATGCTCGTCTGCATCCCAGGGCTGTAAATTGCCGGA
AGAAGAAATGTGGCCACAGCAATCAGTTGAGGCCTAAGAAGAAGATCAAG
TAGACCACTTGCCTTAGTCATGATATGTGCCTTCAGAGAGACATTCCAAT
TATGAGATGTATTTTGTTTGTTTTTTAATAGGATTTGGGATTTGAATTAA
GCGATCATCTAAGTTGGATTGTAGTTGATTCAGTTCAAGTGCAATTCTGT
TAAACTTTTACGGTATGAAATTGGGAT
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