CF417533

Overview
NameCF417533
Unique NameCF417533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.493e-28
Identity = 61/64 (95.31%), Postives = 64/64 (100.00%), Query Frame = 3 
Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITLEVESSDT++NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.256e-28
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 3 
Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            I LEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   13 IALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.256e-28
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 3 
Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.252e-28
Identity = 61/64 (95.31%), Postives = 64/64 (100.00%), Query Frame = 3 
Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.252e-28
Identity = 61/64 (95.31%), Postives = 64/64 (100.00%), Query Frame = 3 
Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.554e-28
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 3 
Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.554e-28
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 3 
Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.253e-28
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 3 
Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.253e-28
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 3 
Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.253e-28
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 3 
Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CF417533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
UBIQ_ACECL2.493e-2895.31Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1[more]
UBIQ_TRYCR3.256e-2896.88Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1[more]
UBIQ_ACACA3.256e-2896.88Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_GEOCY4.252e-2895.31Ubiquitin OS=Geodia cydonium PE=3 SV=1[more]
UBIQ_CAEEL4.252e-2895.31Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ... [more]
UBIQ_EUPEU5.554e-2895.31Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_AGLNE5.554e-2895.31Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1[more]
UBIQ_XENLA7.253e-2895.31Ubiquitin OS=Xenopus laevis PE=1 SV=1[more]
UBIQ_SPOFR7.253e-2895.31Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1[more]
UBIQ_RAT7.253e-2895.31Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-463 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417533 ID=CF417533; Name=CF417533; organism=Citrus sinensis; type=EST; length=527bp
CCATAACTCTCGAAGTCGAGAGCAGCGACACCATCGACAATGTCAAAGCT
AAGATTCAAGACAAGGAAGGAATTCCCCCGGATCAGCAGCGTCTCATCTT
CGCCGGAAAGCAGCTCGAAGATGGCCGTACCTTGGCTGATTACAATATTC
AGAAAGAATCCACTCTTCATTTGGTGCTGAGGCTTAGGGGAGGTATCATT
GAGCCTTCATTGATGGCTTTGGCTCGCAAATACAATCAGGATAAGATGAT
TTGCCGCAAATGTTATGCTCGTCTGCATCCCAGGGCTGTAAATTGCCGGA
AGAAGAAATGTGGCCACAGCAATCAGTTGAGGCCTAAGAAGAAGATCAAG
TAGACCACTTGCCTTAGTCATGATATGTGCCTTCAGAGAGACATTCCAAT
TATGAGATGTATTTTGTTTGTTTTTTAATAGGATTTGGGATTTGAATTAA
GCGATCATCTAAGTTGGATTGTAGTTGATTCAGTTCAAGTGCAATTCTGT
TAAACTTTTACGGTATGAAATTGGGAT
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