CF417533

Overview
NameCF417533
Unique NameCF417533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: UBIQ_RABIT (Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.253e-28
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 3 
Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: UBIQ_PONPY (Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 7.253e-28
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 3 
Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: UBIQ_PLUXY (Ubiquitin OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.253e-28
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 3 
Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: UBIQ_PIG (Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.253e-28
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 3 
Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 7.253e-28
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 3 
Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.253e-28
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 3 
Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.253e-28
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 3 
Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.253e-28
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 3 
Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.253e-28
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 3 
Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.253e-28
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 3 
Query:    3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194
            ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CF417533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
UBIQ_RABIT7.253e-2895.31Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1[more]
UBIQ_PONPY7.253e-2895.31Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2[more]
UBIQ_PLUXY7.253e-2895.31Ubiquitin OS=Plutella xylostella PE=3 SV=1[more]
UBIQ_PIG7.253e-2895.31Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1[more]
UBIQ_PANTR7.253e-2895.31Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2[more]
UBIQ_OPHHA7.253e-2895.31Ubiquitin OS=Ophiophagus hannah PE=3 SV=1[more]
UBIQ_MOUSE7.253e-2895.31Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1[more]
UBIQ_MANSE7.253e-2895.31Ubiquitin OS=Manduca sexta PE=3 SV=1[more]
UBIQ_MACFA7.253e-2895.31Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=... [more]
UBIQ_ICTPU7.253e-2895.31Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-463 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417533 ID=CF417533; Name=CF417533; organism=Citrus sinensis; type=EST; length=527bp
CCATAACTCTCGAAGTCGAGAGCAGCGACACCATCGACAATGTCAAAGCT
AAGATTCAAGACAAGGAAGGAATTCCCCCGGATCAGCAGCGTCTCATCTT
CGCCGGAAAGCAGCTCGAAGATGGCCGTACCTTGGCTGATTACAATATTC
AGAAAGAATCCACTCTTCATTTGGTGCTGAGGCTTAGGGGAGGTATCATT
GAGCCTTCATTGATGGCTTTGGCTCGCAAATACAATCAGGATAAGATGAT
TTGCCGCAAATGTTATGCTCGTCTGCATCCCAGGGCTGTAAATTGCCGGA
AGAAGAAATGTGGCCACAGCAATCAGTTGAGGCCTAAGAAGAAGATCAAG
TAGACCACTTGCCTTAGTCATGATATGTGCCTTCAGAGAGACATTCCAAT
TATGAGATGTATTTTGTTTGTTTTTTAATAGGATTTGGGATTTGAATTAA
GCGATCATCTAAGTTGGATTGTAGTTGATTCAGTTCAAGTGCAATTCTGT
TAAACTTTTACGGTATGAAATTGGGAT
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