CF417533
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 8.019e-27 Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 3 Query: 3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194 I LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG Sbjct: 13 IALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2) HSP 1 Score: 118.627 bits (296), Expect = 1.787e-26 Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 3 Query: 3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 188 ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR Sbjct: 2 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 5.198e-26 Identity = 58/64 (90.62%), Postives = 61/64 (95.31%), Query Frame = 3 Query: 3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194 I LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG Sbjct: 13 IALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: RL40_NICSY (60S ribosomal protein L40 OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 1.672e-24 Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 3 Query: 195 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 350 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCR+KKCGHSNQLRPKKKIK Sbjct: 1 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRRKKCGHSNQLRPKKKIK 52
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: RL40_ORYSJ (60S ribosomal protein L40 OS=Oryza sativa subsp. japonica GN=Ub-CEP52-1 PE=3 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 2.852e-24 Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 3 Query: 195 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 350 IIEPSL ALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK Sbjct: 1 IIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: RL40_ARATH (60S ribosomal protein L40 OS=Arabidopsis thaliana GN=UBQ1 PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 2.852e-24 Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 3 Query: 195 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 350 IIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK Sbjct: 1 IIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: RL40_BRARA (60S ribosomal protein L40 OS=Brassica rapa PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 6.354e-24 Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 3 Query: 195 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 350 IIEPSLMALARKYNQ KMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK Sbjct: 1 IIEPSLMALARKYNQAKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: RL40_CHLRE (60S ribosomal protein L40 OS=Chlamydomonas reinhardtii GN=UBI1 PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 5.947e-22 Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 3 Query: 195 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 350 IIEPSL ALARKYNQ+KMICRKCYARLHPRA NCRKK CGH+NQLRPKKK+K Sbjct: 1 IIEPSLQALARKYNQEKMICRKCYARLHPRAKNCRKKSCGHTNQLRPKKKLK 52
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.325e-21 Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 3 Query: 3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194 IT+E E DT+ VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG Sbjct: 13 ITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: RL40_SHEEP (60S ribosomal protein L40 OS=Ovis aries GN=UBA52 PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 3.855e-21 Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 3 Query: 195 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 350 IIEPSL LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K Sbjct: 1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52 The following BLAST results are available for this feature:
BLAST of CF417533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 124
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417533 ID=CF417533; Name=CF417533; organism=Citrus sinensis; type=EST; length=527bpback to top |