CF417533

Overview
NameCF417533
Unique NameCF417533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: RL40_RAT (60S ribosomal protein L40 OS=Rattus norvegicus GN=Uba52 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.855e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 3 
Query:  195 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 350
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: RL40_PONAB (60S ribosomal protein L40 OS=Pongo abelii GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.855e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 3 
Query:  195 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 350
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: RL40_PIG (60S ribosomal protein L40 OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.855e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 3 
Query:  195 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 350
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: RL40_OPHHA (60S ribosomal protein L40 OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.855e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 3 
Query:  195 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 350
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: RL40_MOUSE (60S ribosomal protein L40 OS=Mus musculus GN=Uba52 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.855e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 3 
Query:  195 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 350
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: RL40_MACFA (60S ribosomal protein L40 OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.855e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 3 
Query:  195 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 350
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: RL40_HUMAN (60S ribosomal protein L40 OS=Homo sapiens GN=UBA52 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.855e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 3 
Query:  195 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 350
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: RL40_FELCA (60S ribosomal protein L40 OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.855e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 3 
Query:  195 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 350
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: RL40_CHICK (60S ribosomal protein L40 OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.855e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 3 
Query:  195 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 350
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: RL40_CANFA (60S ribosomal protein L40 OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.855e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 3 
Query:  195 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 350
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
The following BLAST results are available for this feature:
BLAST of CF417533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RL40_RAT3.855e-2186.5460S ribosomal protein L40 OS=Rattus norvegicus GN=... [more]
RL40_PONAB3.855e-2186.5460S ribosomal protein L40 OS=Pongo abelii GN=UBA52... [more]
RL40_PIG3.855e-2186.5460S ribosomal protein L40 OS=Sus scrofa GN=UBA52 P... [more]
RL40_OPHHA3.855e-2186.5460S ribosomal protein L40 OS=Ophiophagus hannah PE... [more]
RL40_MOUSE3.855e-2186.5460S ribosomal protein L40 OS=Mus musculus GN=Uba52... [more]
RL40_MACFA3.855e-2186.5460S ribosomal protein L40 OS=Macaca fascicularis G... [more]
RL40_HUMAN3.855e-2186.5460S ribosomal protein L40 OS=Homo sapiens GN=UBA52... [more]
RL40_FELCA3.855e-2186.5460S ribosomal protein L40 OS=Felis catus GN=UBA52 ... [more]
RL40_CHICK3.855e-2186.5460S ribosomal protein L40 OS=Gallus gallus GN=UBA5... [more]
RL40_CANFA3.855e-2186.5460S ribosomal protein L40 OS=Canis familiaris GN=U... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-463 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417533 ID=CF417533; Name=CF417533; organism=Citrus sinensis; type=EST; length=527bp
CCATAACTCTCGAAGTCGAGAGCAGCGACACCATCGACAATGTCAAAGCT
AAGATTCAAGACAAGGAAGGAATTCCCCCGGATCAGCAGCGTCTCATCTT
CGCCGGAAAGCAGCTCGAAGATGGCCGTACCTTGGCTGATTACAATATTC
AGAAAGAATCCACTCTTCATTTGGTGCTGAGGCTTAGGGGAGGTATCATT
GAGCCTTCATTGATGGCTTTGGCTCGCAAATACAATCAGGATAAGATGAT
TTGCCGCAAATGTTATGCTCGTCTGCATCCCAGGGCTGTAAATTGCCGGA
AGAAGAAATGTGGCCACAGCAATCAGTTGAGGCCTAAGAAGAAGATCAAG
TAGACCACTTGCCTTAGTCATGATATGTGCCTTCAGAGAGACATTCCAAT
TATGAGATGTATTTTGTTTGTTTTTTAATAGGATTTGGGATTTGAATTAA
GCGATCATCTAAGTTGGATTGTAGTTGATTCAGTTCAAGTGCAATTCTGT
TAAACTTTTACGGTATGAAATTGGGAT
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