CF417533
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: RL40_BOVIN (60S ribosomal protein L40 OS=Bos taurus GN=UBA52 PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 3.855e-21 Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 3 Query: 195 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 350 IIEPSL LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K Sbjct: 1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2) HSP 1 Score: 100.138 bits (248), Expect = 6.576e-21 Identity = 47/64 (73.44%), Postives = 56/64 (87.50%), Query Frame = 3 Query: 3 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 194 IT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG Sbjct: 13 ITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: RL40_ACACA (60S ribosomal protein L40 OS=Acanthamoeba castellanii PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.122e-20 Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 3 Query: 195 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 350 +IEPSL LARKYN DK++CRKCYARLHPRAVNCRKKKCGHSN RPKKK+K Sbjct: 1 VIEPSLQVLARKYNCDKVVCRKCYARLHPRAVNCRKKKCGHSNHWRPKKKLK 52
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: RL40_DROME (60S ribosomal protein L40 OS=Drosophila melanogaster GN=RpL40 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.465e-20 Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 3 Query: 195 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 350 IIEPSL LA+KYN DKMICRKCYARLHPRA NCRKKKCGH+N LRPKKK+K Sbjct: 1 IIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNNLRPKKKLK 52
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: RL40_DICDI (60S ribosomal protein L40 OS=Dictyostelium discoideum GN=ubqB PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.499e-20 Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 3 Query: 198 IEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKI 347 IEPSL+ LARKY DKMICRKCYARLHPRAVNCRKKKCGHSN LRPKKK+ Sbjct: 1 IEPSLVILARKYKCDKMICRKCYARLHPRAVNCRKKKCGHSNNLRPKKKL 50
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: RL40_NEUCR (60S ribosomal protein L40 OS=Neurospora crassa GN=ubi-1 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.620e-19 Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 3 Query: 195 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 350 IIEPSL ALA K+N DKMICRKCYARL PRA NCRK+KCGH+NQLRPKKK+K Sbjct: 1 IIEPSLKALASKFNCDKMICRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK 52
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: RL40_SCHPO (60S ribosomal protein L40 OS=Schizosaccharomyces pombe GN=ubi1 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.763e-19 Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 3 Query: 195 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 350 IIEPSL ALA KYN +K ICRKCYARL PRA NCRKKKCGH+NQLRPKKK+K Sbjct: 1 IIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQLRPKKKLK 52
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: RL40_YEAST (60S ribosomal protein L40 OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.608e-19 Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 3 Query: 195 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 350 IIEPSL ALA KYN DK +CRKCYARL PRA NCRK+KCGH+NQLRPKKK+K Sbjct: 1 IIEPSLKALASKYNCDKSVCRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK 52
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: RL40_CRYNE (60S ribosomal protein L40 OS=Cryptococcus neoformans GN=UBI1 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 8.887e-18 Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 3 Query: 195 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 350 IIEPSL ALA KYN +K ICRKCYARL PRA NCRK+KCGHS+Q+RPKK +K Sbjct: 1 IIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKRKCGHSSQIRPKKALK 52
BLAST of CF417533 vs. ExPASy Swiss-Prot
Match: RL40_EIMBO (60S ribosomal protein L40 OS=Eimeria bovis PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.980e-17 Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 3 Query: 195 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 350 IIEPSL LA KYN +K ICRKCYARL PRA NCRKKKCGH++QLRPKKK K Sbjct: 1 IIEPSLALLASKYNCEKKICRKCYARLPPRATNCRKKKCGHTSQLRPKKKPK 52 The following BLAST results are available for this feature:
BLAST of CF417533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 124
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417533 ID=CF417533; Name=CF417533; organism=Citrus sinensis; type=EST; length=527bpback to top |