CF417557

Overview
NameCF417557
Unique NameCF417557
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417557 vs. ExPASy Swiss-Prot
Match: PTH_THEVO (Peptidyl-tRNA hydrolase OS=Thermoplasma volcanium GN=pth PE=3 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 1.899e-12
Identity = 27/62 (43.55%), Postives = 37/62 (59.68%), Query Frame = 3
Query:  297 LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEM 482
            +KL + VR+DL MG GKIA+Q AHAA     + M+  + +  +W   GQ KIVV   N  E+
Sbjct:    3 VKLVVAVRKDLDMGKGKIAAQVAHAAVSCAIKAMKEKKKIFDEWMDEGQKKIVVKVPNVDEI 64          

HSP 2 Score: 39.6614 bits (91), Expect = 1.899e-12
Identity = 18/47 (38.30%), Postives = 29/47 (61.70%), Query Frame = 2
Query:  509 AENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 649
            A++ G+   V+ D G TQV  G+ T + +GP  +  +D +TGK +LL
Sbjct:   71 ADSMGIINEVIQDRGYTQVEPGTVTCIGLGPDYEVYLDDITGKYKLL 117          
BLAST of CF417557 vs. ExPASy Swiss-Prot
Match: PTH_THEAC (Peptidyl-tRNA hydrolase OS=Thermoplasma acidophilum GN=pth PE=1 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 4.164e-12
Identity = 26/61 (42.62%), Postives = 36/61 (59.02%), Query Frame = 3
Query:  300 KLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEM 482
            K+ + VR+DL MG GKIA+Q AHAA       M+ +R +  +W   GQ KIVV   +  E+
Sbjct:    4 KMVIAVRKDLDMGKGKIAAQVAHAAVTCAIRSMKINRDVFNEWYDEGQRKIVVKVNDLDEI 64          

HSP 2 Score: 41.2022 bits (95), Expect = 4.164e-12
Identity = 18/48 (37.50%), Postives = 30/48 (62.50%), Query Frame = 2
Query:  506 VAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 649
            +A++ G+   +V D G TQV  G+ T + +GP  +  +D +TGK +LL
Sbjct:   70 MADSMGIVNEIVQDRGYTQVEPGTITCIGLGPDEEEKLDKITGKYKLL 117          
BLAST of CF417557 vs. ExPASy Swiss-Prot
Match: PTH_HALLT (Peptidyl-tRNA hydrolase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=pth PE=3 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 4.164e-12
Identity = 22/62 (35.48%), Postives = 39/62 (62.90%), Query Frame = 3
Query:  297 LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEM 482
            +K A+V R D+ MG GK+A+Q AHA+   Y +   + R + +KW+  GQ K+V+   ++ ++
Sbjct:    1 MKQAIVARTDIGMGEGKLAAQVAHASLSAYQD---AGRRVRKKWQGEGQKKVVLKGDSESQL 59          

HSP 2 Score: 45.0542 bits (105), Expect = 4.164e-12
Identity = 22/53 (41.51%), Postives = 33/53 (62.26%), Query Frame = 2
Query:  485 SRNKLWEVAENT---GLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTG 634
            S ++L+E+A+     G+P  ++ DAG TQ+  G+ T LA+GP     VD VTG
Sbjct:   55 SESQLFELADKADKEGIPYAIIRDAGHTQLEPGTVTALAVGPARDDTVDRVTG 107          
BLAST of CF417557 vs. ExPASy Swiss-Prot
Match: PTH_METAC (Peptidyl-tRNA hydrolase OS=Methanosarcina acetivorans GN=pth PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 5.410e-12
Identity = 23/52 (44.23%), Postives = 34/52 (65.38%), Query Frame = 2
Query:  494 KLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 649
            +L E A   GLPT ++ DAG T++ AG+ TVL IGP  + ++D VT   +L+
Sbjct:   64 ELKEKARREGLPTALIQDAGLTEIPAGTVTVLGIGPAKEEVIDKVTRDLKLV 115          

HSP 2 Score: 43.1282 bits (100), Expect = 5.410e-12
Identity = 24/55 (43.64%), Postives = 31/55 (56.36%), Query Frame = 3
Query:  294 DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVV 458
            + K  +V R DLK+  GK A Q AHAA        +SD   L KW++ GQ KIV+
Sbjct:    3 EYKQCIVTRDDLKLSKGKFAVQVAHAALSAAEWASKSD---LEKWKEGGQKKIVL 54          
BLAST of CF417557 vs. ExPASy Swiss-Prot
Match: PTH_METBU (Peptidyl-tRNA hydrolase OS=Methanococcoides burtonii (strain DSM 6242) GN=pth PE=3 SV=1)

HSP 1 Score: 46.2098 bits (108), Expect = 7.028e-12
Identity = 22/52 (42.31%), Postives = 32/52 (61.54%), Query Frame = 2
Query:  494 KLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 649
            +L E A   GL T ++ DAG T+++ G+ TVL IGP     +D VTG  +L+
Sbjct:   64 ELKEKARREGLSTALITDAGLTEIAPGTVTVLGIGPARADYIDKVTGNLKLV 115          

HSP 2 Score: 45.0542 bits (105), Expect = 7.028e-12
Identity = 22/63 (34.92%), Postives = 36/63 (57.14%), Query Frame = 3
Query:  294 DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEM 482
            + K  +++R DLK+  GK+A Q AHAA        +SD   L  W++ GQ K+V+  +  Q++
Sbjct:    3 EYKQCIIIRDDLKLSKGKLAVQVAHAAVSAAEWASRSD---LENWKEGGQKKVVLRVEKLQDL 62          
BLAST of CF417557 vs. ExPASy Swiss-Prot
Match: PTH_METBF (Peptidyl-tRNA hydrolase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=pth PE=3 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 9.130e-12
Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 2
Query:  494 KLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 649
            +L E A   GLPT ++ DAG T++  G+ TVL IGP  + L+D VT   +L+
Sbjct:   64 ELKEKARREGLPTALIQDAGLTEIPPGTVTVLGIGPAKEELIDKVTRNLKLV 115          

HSP 2 Score: 42.743 bits (99), Expect = 9.130e-12
Identity = 23/55 (41.82%), Postives = 32/55 (58.18%), Query Frame = 3
Query:  294 DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVV 458
            + K  +V R+DLK+  GK A Q AHAA        ++D   L KW++ GQ KIV+
Sbjct:    3 EYKQCIVTREDLKLSKGKFAVQVAHAAISASEWASKND---LEKWKEGGQKKIVL 54          
BLAST of CF417557 vs. ExPASy Swiss-Prot
Match: PTH_METJA (Peptidyl-tRNA hydrolase OS=Methanocaldococcus jannaschii GN=pth PE=1 SV=1)

HSP 1 Score: 45.8246 bits (107), Expect = 1.186e-11
Identity = 20/51 (39.22%), Postives = 31/51 (60.78%), Query Frame = 2
Query:  497 LWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 649
            ++  A + GLP  ++ DAG TQ+  G+ T +AIGP     +D +TG  +LL
Sbjct:   65 IYNKARSEGLPCSIIRDAGHTQLEPGTLTAVAIGPEKDEKIDKITGHLKLL 115          

HSP 2 Score: 44.669 bits (104), Expect = 1.186e-11
Identity = 19/62 (30.65%), Postives = 37/62 (59.68%), Query Frame = 3
Query:  297 LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEM 482
            +K+ +V+R DL MG GK+ +Q  HA    + +  + +   + +W + GQ K+VV   +++E+
Sbjct:    1 MKMVVVIRNDLGMGKGKMVAQGGHAIIEAFLDAKRKNPRAVDEWLREGQKKVVVKVNSEKEL 62          
BLAST of CF417557 vs. ExPASy Swiss-Prot
Match: PTH_METMA (Peptidyl-tRNA hydrolase OS=Methanosarcina mazei GN=pth PE=3 SV=2)

HSP 1 Score: 47.3654 bits (111), Expect = 1.541e-11
Identity = 22/52 (42.31%), Postives = 33/52 (63.46%), Query Frame = 2
Query:  494 KLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 649
            +L E A   GLPT ++ DAG T++  G+ TVL IGP  + L+D +T   +L+
Sbjct:   64 ELKEKARREGLPTALIQDAGLTEIPPGTVTVLGIGPAKEELIDKITKDLKLV 115          

HSP 2 Score: 42.743 bits (99), Expect = 1.541e-11
Identity = 24/63 (38.10%), Postives = 34/63 (53.97%), Query Frame = 3
Query:  294 DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEM 482
            + K  +V R DLK+  GK A Q AHAA        + D   L KW++ GQ KIV+   + +E+
Sbjct:    3 EYKQCIVTRDDLKLSKGKFAVQVAHAALSAAEWASKGD---LEKWKEGGQKKIVLKVPSIKEL 62          
BLAST of CF417557 vs. ExPASy Swiss-Prot
Match: PTH_METM7 (Peptidyl-tRNA hydrolase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pth PE=3 SV=1)

HSP 1 Score: 45.8246 bits (107), Expect = 2.599e-11
Identity = 20/59 (33.90%), Postives = 34/59 (57.63%), Query Frame = 3
Query:  306 ALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEM 482
            A+V+R DLKMG GK+A+Q  HA+   +    +     +  W   GQ K+V+   +++E+
Sbjct:    5 AIVIRNDLKMGKGKMAAQACHASIQAFLHAQKISSSAVSGWMNEGQKKVVLKVNSEKEL 63          

HSP 2 Score: 43.5134 bits (101), Expect = 2.599e-11
Identity = 24/58 (41.38%), Postives = 33/58 (56.90%), Query Frame = 2
Query:  485 SRNKLWEVAENT---GLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 649
            S  +L E+ +N    GLP  ++ DAGRTQV  GS T + IGP  +  +  VT   +LL
Sbjct:   59 SEKELLEIFKNVNIEGLPCSLIRDAGRTQVEPGSLTAVGIGPEKEEKISKVTKDLKLL 116          
BLAST of CF417557 vs. ExPASy Swiss-Prot
Match: PTH_METM6 (Peptidyl-tRNA hydrolase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pth PE=3 SV=1)

HSP 1 Score: 45.8246 bits (107), Expect = 3.376e-11
Identity = 20/59 (33.90%), Postives = 34/59 (57.63%), Query Frame = 3
Query:  306 ALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEM 482
            A+V+R DLKMG GK+A+Q  HA+   +    +     +  W   GQ K+V+   +++E+
Sbjct:    5 AIVIRNDLKMGKGKMAAQACHASLQAFLHAQKISSSAVSGWMNEGQKKVVLKVNSEKEL 63          

HSP 2 Score: 43.1282 bits (100), Expect = 3.376e-11
Identity = 23/58 (39.66%), Postives = 33/58 (56.90%), Query Frame = 2
Query:  485 SRNKLWEVAENT---GLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 649
            S  +L E+ +N    GLP  ++ DAGRTQ+  GS T + IGP  +  +  VT   +LL
Sbjct:   59 SEKELLEIFKNVNIEGLPCSLIRDAGRTQIEPGSLTAVGIGPEKEEKISKVTKDLKLL 116          
The following BLAST results are available for this feature:
BLAST of CF417557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
PTH_THEVO1.899e-1243.55Peptidyl-tRNA hydrolase OS=Thermoplasma volcanium ... [more]
PTH_THEAC4.164e-1242.62Peptidyl-tRNA hydrolase OS=Thermoplasma acidophilu... [more]
PTH_HALLT4.164e-1235.48Peptidyl-tRNA hydrolase OS=Halorubrum lacusprofund... [more]
PTH_METAC5.410e-1244.23Peptidyl-tRNA hydrolase OS=Methanosarcina acetivor... [more]
PTH_METBU7.028e-1242.31Peptidyl-tRNA hydrolase OS=Methanococcoides burton... [more]
PTH_METBF9.130e-1244.23Peptidyl-tRNA hydrolase OS=Methanosarcina barkeri ... [more]
PTH_METJA1.186e-1139.22Peptidyl-tRNA hydrolase OS=Methanocaldococcus jann... [more]
PTH_METMA1.541e-1142.31Peptidyl-tRNA hydrolase OS=Methanosarcina mazei GN... [more]
PTH_METM72.599e-1133.90Peptidyl-tRNA hydrolase OS=Methanococcus maripalud... [more]
PTH_METM63.376e-1133.90Peptidyl-tRNA hydrolase OS=Methanococcus maripalud... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-487 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417557 ID=CF417557; Name=CF417557; organism=Citrus sinensis; type=EST; length=712bp
GTCCGTGCAACTGTTAACCACGCAATCAGTAATCTGTTCATAATCTGTTA
ACGACGATGTGGGCTTCCCAGCAAAACTCTTCTCAGCTTTCTAACAAGAA
GCAGCAGAAGCAGGAAAAAGTATCGTTAGCAGTGAGTTTTAGGCCAGAGA
ATTTCATCCCAGGCCTTGTAATTGGTTTCATTTTTGGGATGTTATTAGAT
TTATCAAAGCCAGGTAAGAATTATGTGAAAAAGAAAAATTTCTTACCGAG
GAAACCACAAGAACAAGTTTCTGTCTCAAGTGACGGTGACCAAGACCTCA
AATTGGCTTTGGTGGTTAGGCAAGACCTGAAGATGGGGAGTGGAAAGATT
GCATCACAATGTGCCCATGCAGCCACTGGGATGTATGCAGAACTAATGCA
AAGTGACCGGCACCTTCTGAGAAAATGGGAGCAATGTGGGCAGCCCAAGA
TAGTTGTTACGTGCAAGAATCAACAAGAAATGTAAGCAGGAATAAGCTGT
GGGAAGTAGCTGAAAACACGGGCCTTCCAACTTTTGTTGTTGCGGATGCT
GGACGGACACAGGTTTCAGCTGGGTCGAAGACGGTTCTTGCCATCGGACC
TGGACCCAAATCTTTGGTGGATTCTGTGACAGGGAAACAGCGCCTGCTCT
AGTTATGCTTAAGAATGGAGGACTTTTTGCTTAAATTTCCCCGGATGACA
ATGTTAAAAGAT
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