CF417557

Overview
NameCF417557
Unique NameCF417557
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417557 vs. ExPASy Swiss-Prot
Match: PTH_METM5 (Peptidyl-tRNA hydrolase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pth PE=3 SV=1)

HSP 1 Score: 45.8246 bits (107), Expect = 3.376e-11
Identity = 20/59 (33.90%), Postives = 34/59 (57.63%), Query Frame = 3
Query:  306 ALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEM 482
            A+V+R DLKMG GK+A+Q  HA+   +    +     +  W   GQ K+V+   +++E+
Sbjct:    5 AIVIRNDLKMGKGKMAAQACHASIQAFLHAQKISSSAVSGWMNEGQKKVVLKVNSEKEL 63          

HSP 2 Score: 43.1282 bits (100), Expect = 3.376e-11
Identity = 23/58 (39.66%), Postives = 33/58 (56.90%), Query Frame = 2
Query:  485 SRNKLWEVAENT---GLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 649
            S  +L E+ +N    GLP  ++ DAGRTQ+  GS T + IGP  +  +  VT   +LL
Sbjct:   59 SEKELLEIFKNVNIEGLPCSLIRDAGRTQIEPGSLTAVGIGPEKEEKISKVTKDLKLL 116          
BLAST of CF417557 vs. ExPASy Swiss-Prot
Match: PTH_HALWD (Peptidyl-tRNA hydrolase OS=Haloquadratum walsbyi (strain DSM 16790) GN=pth PE=3 SV=1)

HSP 1 Score: 44.669 bits (104), Expect = 9.606e-11
Identity = 24/57 (42.11%), Postives = 33/57 (57.89%), Query Frame = 2
Query:  485 SRNKLWEVA---ENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 646
            S  KL+++A   E  G+P  VV DAG TQ+  G+ T +AIGP     +D +TG   L
Sbjct:   55 SEKKLFQLADEAERDGIPHAVVRDAGHTQLEPGTVTCIAIGPDSDENIDRITGSLSL 111          

HSP 2 Score: 42.743 bits (99), Expect = 9.606e-11
Identity = 21/62 (33.87%), Postives = 39/62 (62.90%), Query Frame = 3
Query:  297 LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEM 482
            +K A+V R DL+MG GK+A+Q AHA+    + +  +     ++W+  GQ KIV+   +++++
Sbjct:    1 MKQAIVARADLRMGKGKLAAQVAHAS---LSAVEDTGTRSEKQWKGGGQKKIVLKANSEKKL 59          
The following BLAST results are available for this feature:
BLAST of CF417557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
PTH_METM53.376e-1133.90Peptidyl-tRNA hydrolase OS=Methanococcus maripalud... [more]
PTH_HALWD9.606e-1142.11Peptidyl-tRNA hydrolase OS=Haloquadratum walsbyi (... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-487 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417557 ID=CF417557; Name=CF417557; organism=Citrus sinensis; type=EST; length=712bp
GTCCGTGCAACTGTTAACCACGCAATCAGTAATCTGTTCATAATCTGTTA
ACGACGATGTGGGCTTCCCAGCAAAACTCTTCTCAGCTTTCTAACAAGAA
GCAGCAGAAGCAGGAAAAAGTATCGTTAGCAGTGAGTTTTAGGCCAGAGA
ATTTCATCCCAGGCCTTGTAATTGGTTTCATTTTTGGGATGTTATTAGAT
TTATCAAAGCCAGGTAAGAATTATGTGAAAAAGAAAAATTTCTTACCGAG
GAAACCACAAGAACAAGTTTCTGTCTCAAGTGACGGTGACCAAGACCTCA
AATTGGCTTTGGTGGTTAGGCAAGACCTGAAGATGGGGAGTGGAAAGATT
GCATCACAATGTGCCCATGCAGCCACTGGGATGTATGCAGAACTAATGCA
AAGTGACCGGCACCTTCTGAGAAAATGGGAGCAATGTGGGCAGCCCAAGA
TAGTTGTTACGTGCAAGAATCAACAAGAAATGTAAGCAGGAATAAGCTGT
GGGAAGTAGCTGAAAACACGGGCCTTCCAACTTTTGTTGTTGCGGATGCT
GGACGGACACAGGTTTCAGCTGGGTCGAAGACGGTTCTTGCCATCGGACC
TGGACCCAAATCTTTGGTGGATTCTGTGACAGGGAAACAGCGCCTGCTCT
AGTTATGCTTAAGAATGGAGGACTTTTTGCTTAAATTTCCCCGGATGACA
ATGTTAAAAGAT
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