CF417558

Overview
NameCF417558
Unique NameCF417558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2A1J_HUMAN (Histone H2A type 1-J OS=Homo sapiens GN=HIST1H2AJ PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.619e-20
Identity = 57/89 (64.04%), Postives = 66/89 (74.16%), Query Frame = 2 
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIA 514
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIA 104
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2A1H_HUMAN (Histone H2A type 1-H OS=Homo sapiens GN=HIST1H2AH PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.619e-20
Identity = 57/89 (64.04%), Postives = 66/89 (74.16%), Query Frame = 2 
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIA 514
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIA 104
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2A1D_HUMAN (Histone H2A type 1-D OS=Homo sapiens GN=HIST1H2AD PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.619e-20
Identity = 57/89 (64.04%), Postives = 66/89 (74.16%), Query Frame = 2 
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIA 514
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIA 104
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2A1C_RAT (Histone H2A type 1-C OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.619e-20
Identity = 54/83 (65.06%), Postives = 62/83 (74.70%), Query Frame = 2 
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI 499
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 98
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2A1C_HUMAN (Histone H2A type 1-C OS=Homo sapiens GN=HIST1H2AC PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.619e-20
Identity = 54/83 (65.06%), Postives = 62/83 (74.70%), Query Frame = 2 
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI 499
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 98
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2A_ASPNG (Histone H2A OS=Aspergillus niger GN=httA PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.509e-20
Identity = 51/83 (61.45%), Postives = 60/83 (72.29%), Query Frame = 2 
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI 499
            SRSS+AGL FPVGRVHRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 99

HSP 2 Score: 25.409 bits (54), Expect = 2.509e-20
Identity = 11/28 (39.29%), Postives = 18/28 (64.29%), Query Frame = 3 
Query:  519 GGVIPHIHKSLINKSSKE*FVTPSSSRL 602
            GGV+P+IH++L+ K + +    P S  L
Sbjct:  107 GGVLPNIHQNLLPKKTPKSGKGPGSQEL 134
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2A_ASPNC (Histone H2A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=httA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.509e-20
Identity = 51/83 (61.45%), Postives = 60/83 (72.29%), Query Frame = 2 
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI 499
            SRSS+AGL FPVGRVHRLL++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 99

HSP 2 Score: 25.409 bits (54), Expect = 2.509e-20
Identity = 11/28 (39.29%), Postives = 18/28 (64.29%), Query Frame = 3 
Query:  519 GGVIPHIHKSLINKSSKE*FVTPSSSRL 602
            GGV+P+IH++L+ K + +    P S  L
Sbjct:  107 GGVLPNIHQNLLPKKTPKSGKGPGSQEL 134
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.516e-20
Identity = 52/84 (61.90%), Postives = 60/84 (71.43%), Query Frame = 2 
Query:  248 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI 499
            VSRSS+AGLQFPVGR+ R LK+              Y AA+LEYLTAEVLELAGNA++D K  RI PRH+QLAIR DEEL  L+
Sbjct:   15 VSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPV-YLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLL 97

HSP 2 Score: 25.0238 bits (53), Expect = 2.516e-20
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 3 
Query:  519 GGVIPHIHKSLINKSSK 569
            GGV+P+IH  L+ K SK
Sbjct:  105 GGVLPNIHAVLLPKKSK 121
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2A_STRPU (Histone H2A, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.761e-20
Identity = 55/89 (61.80%), Postives = 65/89 (73.03%), Query Frame = 2 
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIA 514
            +RSSRAGLQFPVGRVHR L++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA
Sbjct:   16 TRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPV-YMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIA 103
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2A_SEPOF (Histone H2A OS=Sepia officinalis PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.761e-20
Identity = 55/89 (61.80%), Postives = 65/89 (73.03%), Query Frame = 2 
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIA 514
            +RSSRAGLQFPVGR+HRLL++              Y AA++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA
Sbjct:   16 TRSSRAGLQFPVGRIHRLLRKGNYAQRVGAGAPV-YLAAVMEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIA 103
The following BLAST results are available for this feature:
BLAST of CF417558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
H2A1J_HUMAN1.619e-2064.04Histone H2A type 1-J OS=Homo sapiens GN=HIST1H2AJ ... [more]
H2A1H_HUMAN1.619e-2064.04Histone H2A type 1-H OS=Homo sapiens GN=HIST1H2AH ... [more]
H2A1D_HUMAN1.619e-2064.04Histone H2A type 1-D OS=Homo sapiens GN=HIST1H2AD ... [more]
H2A1C_RAT1.619e-2065.06Histone H2A type 1-C OS=Rattus norvegicus PE=1 SV=... [more]
H2A1C_HUMAN1.619e-2065.06Histone H2A type 1-C OS=Homo sapiens GN=HIST1H2AC ... [more]
H2A_ASPNG2.509e-2061.45Histone H2A OS=Aspergillus niger GN=httA PE=2 SV=1[more]
H2A_ASPNC2.509e-2061.45Histone H2A OS=Aspergillus niger (strain CBS 513.8... [more]
H2A4_VOLCA2.516e-2061.90Histone H2A-IV OS=Volvox carteri PE=3 SV=1[more]
H2A_STRPU2.761e-2061.80Histone H2A, embryonic OS=Strongylocentrotus purpu... [more]
H2A_SEPOF2.761e-2061.80Histone H2A OS=Sepia officinalis PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-488 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417558 ID=CF417558; Name=CF417558; organism=Citrus sinensis; type=EST; length=726bp
GTCACTCGTTCTCTCTCTCTCTCTCTCTCACACACAAAAATCTCAAACGC
TCGCTTTGCTTTATCTCTTTCTTTCTTCTCCGATAATTTTCATCTCAGAA
AAAATTAAAAATAATTAAATAAATAATTAATTAATTTAAAAGAAGCTGTA
GCAATTAGGCGGGAAAATGTCGGGCAAAGGAGCCAAAGGACTGATAACAG
GCAAAACCACCATTAACAACAACAAGGATAAGGACAAGAAGAAACCCGTC
TCCCGTTCTTCTCGTGCTGGTCTTCAGTTCCCAGTGGGAAGGGTCCATCG
TCTACTAAAGGAAAGGGCTGCTGCTCACGGAAGGGTTGGCGCAACAGCTG
CTGTTTATACAGCAGCCATTTTGGAATATCTAACTGCCGAAGTGTTGGAG
TTGGCAGGGAATGCTAGCAAGGATTTGAAGGTCAAACGTATTACTCCAAG
GCATTTGCAGCTTGCTATCCGAGGAGATGAAGAACTTGACACTCTCATTA
AAGGAACCATAGCCGGGTGGAGGAGTTATTCCTCATATCCACAAGTCCCT
CATCAATAAATCCTCCAAAGAGTAGTTCGTGACACCGTCATCCTCTCGGC
TTTGTTTATGTGTGTACTTTTAGCTGTGCTGAAATATCTAAATGAGAAAT
GATGCCAAAGATGTGTTAATGCTAGGAATCTGCATTCTTCAATCCTCATT
TCATGCAGCGACGAATTATGGTGCTT
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