CF417558

Overview
NameCF417558
Unique NameCF417558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AZ_SCHPO (Histone H2A.Z OS=Schizosaccharomyces pombe GN=pht1 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.336e-29
Identity = 65/90 (72.22%), Postives = 71/90 (78.89%), Query Frame = 2 
Query:  248 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517
            +S S+RAGLQFPVGRV R LK               Y+AA+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIAG
Sbjct:   25 MSHSARAGLQFPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAG 114

HSP 2 Score: 26.5646 bits (57), Expect = 1.336e-29
Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 3 
Query:  516 GGGVIPHIHKSLINKSSKE 572
            GGGV+PHI+K L+ ++ ++
Sbjct:  114 GGGVLPHINKQLLIRTKEK 132
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AV_XENTR (Histone H2A.V OS=Xenopus tropicalis GN=h2afv PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.460e-29
Identity = 69/90 (76.67%), Postives = 72/90 (80.00%), Query Frame = 2 
Query:  248 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAG
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAG 107
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AV_XENLA (Histone H2A.V OS=Xenopus laevis GN=h2afv PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.460e-29
Identity = 69/90 (76.67%), Postives = 72/90 (80.00%), Query Frame = 2 
Query:  248 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAG
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAG 107
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AV_RABIT (Histone H2A.V OS=Oryctolagus cuniculus GN=H2AFV PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.460e-29
Identity = 69/90 (76.67%), Postives = 72/90 (80.00%), Query Frame = 2 
Query:  248 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAG
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAG 107
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AV_PAGMA (Histone H2A.V OS=Pagrus major GN=h2afv PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.460e-29
Identity = 69/90 (76.67%), Postives = 72/90 (80.00%), Query Frame = 2 
Query:  248 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAG
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAG 107
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AV_MOUSE (Histone H2A.V OS=Mus musculus GN=H2afv PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.460e-29
Identity = 69/90 (76.67%), Postives = 72/90 (80.00%), Query Frame = 2 
Query:  248 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAG
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAG 107
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AV_HUMAN (Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.460e-29
Identity = 69/90 (76.67%), Postives = 72/90 (80.00%), Query Frame = 2 
Query:  248 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAG
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAG 107
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AV_DANRE (Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.460e-29
Identity = 69/90 (76.67%), Postives = 72/90 (80.00%), Query Frame = 2 
Query:  248 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAG
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAG 107
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AV_CHICK (Histone H2A.V OS=Gallus gallus GN=H2AFV PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.460e-29
Identity = 69/90 (76.67%), Postives = 72/90 (80.00%), Query Frame = 2 
Query:  248 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAG
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAG 107
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AV_BOVIN (Histone H2A.V OS=Bos taurus GN=H2AFV PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.460e-29
Identity = 69/90 (76.67%), Postives = 72/90 (80.00%), Query Frame = 2 
Query:  248 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAG
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAG 107
The following BLAST results are available for this feature:
BLAST of CF417558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
H2AZ_SCHPO1.336e-2972.22Histone H2A.Z OS=Schizosaccharomyces pombe GN=pht1... [more]
H2AV_XENTR1.460e-2976.67Histone H2A.V OS=Xenopus tropicalis GN=h2afv PE=2 ... [more]
H2AV_XENLA1.460e-2976.67Histone H2A.V OS=Xenopus laevis GN=h2afv PE=2 SV=3[more]
H2AV_RABIT1.460e-2976.67Histone H2A.V OS=Oryctolagus cuniculus GN=H2AFV PE... [more]
H2AV_PAGMA1.460e-2976.67Histone H2A.V OS=Pagrus major GN=h2afv PE=2 SV=3[more]
H2AV_MOUSE1.460e-2976.67Histone H2A.V OS=Mus musculus GN=H2afv PE=1 SV=3[more]
H2AV_HUMAN1.460e-2976.67Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3[more]
H2AV_DANRE1.460e-2976.67Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3[more]
H2AV_CHICK1.460e-2976.67Histone H2A.V OS=Gallus gallus GN=H2AFV PE=1 SV=2[more]
H2AV_BOVIN1.460e-2976.67Histone H2A.V OS=Bos taurus GN=H2AFV PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-488 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417558 ID=CF417558; Name=CF417558; organism=Citrus sinensis; type=EST; length=726bp
GTCACTCGTTCTCTCTCTCTCTCTCTCTCACACACAAAAATCTCAAACGC
TCGCTTTGCTTTATCTCTTTCTTTCTTCTCCGATAATTTTCATCTCAGAA
AAAATTAAAAATAATTAAATAAATAATTAATTAATTTAAAAGAAGCTGTA
GCAATTAGGCGGGAAAATGTCGGGCAAAGGAGCCAAAGGACTGATAACAG
GCAAAACCACCATTAACAACAACAAGGATAAGGACAAGAAGAAACCCGTC
TCCCGTTCTTCTCGTGCTGGTCTTCAGTTCCCAGTGGGAAGGGTCCATCG
TCTACTAAAGGAAAGGGCTGCTGCTCACGGAAGGGTTGGCGCAACAGCTG
CTGTTTATACAGCAGCCATTTTGGAATATCTAACTGCCGAAGTGTTGGAG
TTGGCAGGGAATGCTAGCAAGGATTTGAAGGTCAAACGTATTACTCCAAG
GCATTTGCAGCTTGCTATCCGAGGAGATGAAGAACTTGACACTCTCATTA
AAGGAACCATAGCCGGGTGGAGGAGTTATTCCTCATATCCACAAGTCCCT
CATCAATAAATCCTCCAAAGAGTAGTTCGTGACACCGTCATCCTCTCGGC
TTTGTTTATGTGTGTACTTTTAGCTGTGCTGAAATATCTAAATGAGAAAT
GATGCCAAAGATGTGTTAATGCTAGGAATCTGCATTCTTCAATCCTCATT
TCATGCAGCGACGAATTATGGTGCTT
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