CF417558

Overview
NameCF417558
Unique NameCF417558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AZ_YARLI (Histone H2A.Z OS=Yarrowia lipolytica GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.011e-27
Identity = 62/88 (70.45%), Postives = 69/88 (78.41%), Query Frame = 2 
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 514
            S SSRAGLQFPVGR+ R +K+              Y AA+LEYLTAEVLELAGNA++DLKVKRITPRHLQLAIRGDEELDTLI+ TIA
Sbjct:   31 SHSSRAGLQFPVGRIKRYMKKSVQNKVRVGAKAAIYIAAVLEYLTAEVLELAGNAARDLKVKRITPRHLQLAIRGDEELDTLIQATIA 118

HSP 2 Score: 24.2534 bits (51), Expect = 2.011e-27
Identity = 9/14 (64.29%), Postives = 13/14 (92.86%), Query Frame = 3 
Query:  519 GGVIPHIHKSLINK 560
            GGV+PHI+K+L+ K
Sbjct:  120 GGVMPHINKALLLK 133
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AV_TETTH (Histone H2A.Z OS=Tetrahymena thermophila GN=HTA3 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.332e-27
Identity = 65/91 (71.43%), Postives = 68/91 (74.73%), Query Frame = 2 
Query:  245 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517
            P SRS +AGLQFPVGR+HR LK               Y AAILEYLTAEVLELAGNASKD KV+RITPRHL LAIRGDEELD LIK TIAG
Sbjct:   27 PQSRSYKAGLQFPVGRIHRFLKGRVSAKNRVGATAAVYAAAILEYLTAEVLELAGNASKDFKVRRITPRHLLLAIRGDEELDILIKATIAG 117
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AZ_KLULA (Histone H2A.Z OS=Kluyveromyces lactis GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 4.453e-27
Identity = 61/88 (69.32%), Postives = 67/88 (76.14%), Query Frame = 2 
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 514
            S S+RAGLQFPVGRV R LK               Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGD+ELD+LI+ TIA
Sbjct:   24 SHSARAGLQFPVGRVKRYLKRNAAGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIRATIA 111

HSP 2 Score: 26.1794 bits (56), Expect = 4.453e-27
Identity = 10/18 (55.56%), Postives = 15/18 (83.33%), Query Frame = 3 
Query:  519 GGVIPHIHKSLINKSSKE 572
            GGV+PHI+K+L+ K  K+
Sbjct:  113 GGVLPHINKALLLKVEKK 130
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AZ_ASHGO (Histone H2A.Z OS=Ashbya gossypii GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 4.453e-27
Identity = 60/88 (68.18%), Postives = 68/88 (77.27%), Query Frame = 2 
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 514
            S S+RAGLQFPVGR+ R LK+              Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGD+ELD+LI+ TIA
Sbjct:   24 SHSARAGLQFPVGRIKRYLKKNAAGKTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIRATIA 111

HSP 2 Score: 26.1794 bits (56), Expect = 4.453e-27
Identity = 10/18 (55.56%), Postives = 15/18 (83.33%), Query Frame = 3 
Query:  519 GGVIPHIHKSLINKSSKE 572
            GGV+PHI+K+L+ K  K+
Sbjct:  113 GGVLPHINKALLLKVEKK 130
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AZ_CRYNE (Histone H2A.Z OS=Cryptococcus neoformans GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.195e-27
Identity = 61/89 (68.54%), Postives = 70/89 (78.65%), Query Frame = 2 
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 517
            +RSS+AGLQFPVGR+HR L+               Y A+I+EYLTAEVLELAGNA+KDL+VKRITPRHLQLAIRGDEELD LI+ TIAG
Sbjct:   24 TRSSKAGLQFPVGRIHRFLRNKNANNVRIGAKAAVYVASIMEYLTAEVLELAGNAAKDLRVKRITPRHLQLAIRGDEELDLLIRATIAG 112
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AZ_GIBZE (Histone H2A.Z OS=Gibberella zeae GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.762e-27
Identity = 62/88 (70.45%), Postives = 67/88 (76.14%), Query Frame = 2 
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 514
            S S+RAGLQFP GRV R LK+              Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA
Sbjct:   30 SHSARAGLQFPCGRVKRFLKQNTQQKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIA 117

HSP 2 Score: 23.483 bits (49), Expect = 5.762e-27
Identity = 8/14 (57.14%), Postives = 13/14 (92.86%), Query Frame = 3 
Query:  519 GGVIPHIHKSLINK 560
            GGV+PHI+++L+ K
Sbjct:  119 GGVLPHINRALLLK 132
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AZ_NEUCR (Histone H2A.Z OS=Neurospora crassa GN=htz-1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.770e-27
Identity = 62/88 (70.45%), Postives = 67/88 (76.14%), Query Frame = 2 
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 514
            S S+RAGLQFP GRV R LK+              Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA
Sbjct:   29 SHSARAGLQFPCGRVKRFLKQNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIA 116

HSP 2 Score: 23.483 bits (49), Expect = 5.770e-27
Identity = 8/14 (57.14%), Postives = 13/14 (92.86%), Query Frame = 3 
Query:  519 GGVIPHIHKSLINK 560
            GGV+PHI+++L+ K
Sbjct:  118 GGVLPHINRALLLK 131
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AZ_MAGGR (Histone H2A.Z OS=Magnaporthe grisea GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.770e-27
Identity = 62/88 (70.45%), Postives = 67/88 (76.14%), Query Frame = 2 
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 514
            S S+RAGLQFP GRV R LK+              Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA
Sbjct:   28 SHSARAGLQFPCGRVKRFLKQNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIA 115

HSP 2 Score: 23.483 bits (49), Expect = 5.770e-27
Identity = 8/14 (57.14%), Postives = 13/14 (92.86%), Query Frame = 3 
Query:  519 GGVIPHIHKSLINK 560
            GGV+PHI+++L+ K
Sbjct:  117 GGVLPHINRALLLK 130
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AZ_CHAGB (Histone H2A.Z OS=Chaetomium globosum GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.770e-27
Identity = 62/88 (70.45%), Postives = 67/88 (76.14%), Query Frame = 2 
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 514
            S S+RAGLQFP GRV R LK+              Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA
Sbjct:   29 SHSARAGLQFPCGRVKRFLKQNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIA 116

HSP 2 Score: 23.483 bits (49), Expect = 5.770e-27
Identity = 8/14 (57.14%), Postives = 13/14 (92.86%), Query Frame = 3 
Query:  519 GGVIPHIHKSLINK 560
            GGV+PHI+++L+ K
Sbjct:  118 GGVLPHINRALLLK 131
[Close]
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AZ_YEAST (Histone H2A.Z OS=Saccharomyces cerevisiae GN=HTZ1 PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 7.548e-27
Identity = 60/88 (68.18%), Postives = 67/88 (76.14%), Query Frame = 2 
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 514
            S S+RAGLQFPVGR+ R LK               Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGD+ELD+LI+ TIA
Sbjct:   24 SSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIRATIA 111

HSP 2 Score: 26.1794 bits (56), Expect = 7.548e-27
Identity = 10/18 (55.56%), Postives = 15/18 (83.33%), Query Frame = 3 
Query:  519 GGVIPHIHKSLINKSSKE 572
            GGV+PHI+K+L+ K  K+
Sbjct:  113 GGVLPHINKALLLKVEKK 130
The following BLAST results are available for this feature:
BLAST of CF417558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
H2AZ_YARLI2.011e-2770.45Histone H2A.Z OS=Yarrowia lipolytica GN=HTZ1 PE=3 ... [more]
H2AV_TETTH2.332e-2771.43Histone H2A.Z OS=Tetrahymena thermophila GN=HTA3 P... [more]
H2AZ_KLULA4.453e-2769.32Histone H2A.Z OS=Kluyveromyces lactis GN=HTZ1 PE=3... [more]
H2AZ_ASHGO4.453e-2768.18Histone H2A.Z OS=Ashbya gossypii GN=HTZ1 PE=3 SV=3[more]
H2AZ_CRYNE5.195e-2768.54Histone H2A.Z OS=Cryptococcus neoformans GN=HTZ1 P... [more]
H2AZ_GIBZE5.762e-2770.45Histone H2A.Z OS=Gibberella zeae GN=HTZ1 PE=3 SV=1[more]
H2AZ_NEUCR5.770e-2770.45Histone H2A.Z OS=Neurospora crassa GN=htz-1 PE=3 S... [more]
H2AZ_MAGGR5.770e-2770.45Histone H2A.Z OS=Magnaporthe grisea GN=HTZ1 PE=3 S... [more]
H2AZ_CHAGB5.770e-2770.45Histone H2A.Z OS=Chaetomium globosum GN=HTZ1 PE=3 ... [more]
H2AZ_YEAST7.548e-2768.18Histone H2A.Z OS=Saccharomyces cerevisiae GN=HTZ1 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-488 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417558 ID=CF417558; Name=CF417558; organism=Citrus sinensis; type=EST; length=726bp
GTCACTCGTTCTCTCTCTCTCTCTCTCTCACACACAAAAATCTCAAACGC
TCGCTTTGCTTTATCTCTTTCTTTCTTCTCCGATAATTTTCATCTCAGAA
AAAATTAAAAATAATTAAATAAATAATTAATTAATTTAAAAGAAGCTGTA
GCAATTAGGCGGGAAAATGTCGGGCAAAGGAGCCAAAGGACTGATAACAG
GCAAAACCACCATTAACAACAACAAGGATAAGGACAAGAAGAAACCCGTC
TCCCGTTCTTCTCGTGCTGGTCTTCAGTTCCCAGTGGGAAGGGTCCATCG
TCTACTAAAGGAAAGGGCTGCTGCTCACGGAAGGGTTGGCGCAACAGCTG
CTGTTTATACAGCAGCCATTTTGGAATATCTAACTGCCGAAGTGTTGGAG
TTGGCAGGGAATGCTAGCAAGGATTTGAAGGTCAAACGTATTACTCCAAG
GCATTTGCAGCTTGCTATCCGAGGAGATGAAGAACTTGACACTCTCATTA
AAGGAACCATAGCCGGGTGGAGGAGTTATTCCTCATATCCACAAGTCCCT
CATCAATAAATCCTCCAAAGAGTAGTTCGTGACACCGTCATCCTCTCGGC
TTTGTTTATGTGTGTACTTTTAGCTGTGCTGAAATATCTAAATGAGAAAT
GATGCCAAAGATGTGTTAATGCTAGGAATCTGCATTCTTCAATCCTCATT
TCATGCAGCGACGAATTATGGTGCTT
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