CF417558

Overview
NameCF417558
Unique NameCF417558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2A2_PSAMI (Late histone H2A.2.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.563e-21
Identity = 57/89 (64.04%), Postives = 65/89 (73.03%), Query Frame = 2
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIA 514
            SRSSRAGLQFPVGRVHR LK+              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA
Sbjct:   16 SRSSRAGLQFPVGRVHRFLKKGNYGNRVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIA 103          
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2A2B_MOUSE (Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 5.563e-21
Identity = 57/89 (64.04%), Postives = 66/89 (74.16%), Query Frame = 2
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIA 514
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIA 104          
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2A2B_HUMAN (Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 5.563e-21
Identity = 57/89 (64.04%), Postives = 66/89 (74.16%), Query Frame = 2
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIA 514
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIA 104          
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2A_MYTTR (Histone H2A OS=Mytilus trossulus PE=3 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 7.265e-21
Identity = 57/89 (64.04%), Postives = 65/89 (73.03%), Query Frame = 2
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIA 514
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAGRVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIA 103          
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2A_MYTGA (Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 7.265e-21
Identity = 57/89 (64.04%), Postives = 65/89 (73.03%), Query Frame = 2
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIA 514
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIA 103          
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2A_MYTED (Histone H2A OS=Mytilus edulis PE=3 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 7.265e-21
Identity = 57/89 (64.04%), Postives = 65/89 (73.03%), Query Frame = 2
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIA 514
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIA 103          
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2A_MYTCH (Histone H2A OS=Mytilus chilensis PE=3 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 7.265e-21
Identity = 57/89 (64.04%), Postives = 65/89 (73.03%), Query Frame = 2
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIA 514
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIA 103          
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2A_MYTCA (Histone H2A OS=Mytilus californianus PE=3 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 7.265e-21
Identity = 57/89 (64.04%), Postives = 65/89 (73.03%), Query Frame = 2
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIA 514
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIA 103          
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2A_CAIMO (Histone H2A OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.265e-21
Identity = 58/89 (65.17%), Postives = 66/89 (74.16%), Query Frame = 2
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIA 514
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIA 104          
BLAST of CF417558 vs. ExPASy Swiss-Prot
Match: H2AJ_MACFA (Histone H2A.J OS=Macaca fascicularis GN=H2AFJ PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.265e-21
Identity = 58/89 (65.17%), Postives = 66/89 (74.16%), Query Frame = 2
Query:  251 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIA 514
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIA 104          
The following BLAST results are available for this feature:
BLAST of CF417558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
H2A2_PSAMI5.563e-2164.04Late histone H2A.2.1 OS=Psammechinus miliaris PE=2... [more]
H2A2B_MOUSE5.563e-2164.04Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab ... [more]
H2A2B_HUMAN5.563e-2164.04Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB ... [more]
H2A_MYTTR7.265e-2164.04Histone H2A OS=Mytilus trossulus PE=3 SV=3[more]
H2A_MYTGA7.265e-2164.04Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3[more]
H2A_MYTED7.265e-2164.04Histone H2A OS=Mytilus edulis PE=3 SV=3[more]
H2A_MYTCH7.265e-2164.04Histone H2A OS=Mytilus chilensis PE=3 SV=3[more]
H2A_MYTCA7.265e-2164.04Histone H2A OS=Mytilus californianus PE=3 SV=3[more]
H2A_CAIMO7.265e-2165.17Histone H2A OS=Cairina moschata PE=3 SV=2[more]
H2AJ_MACFA7.265e-2165.17Histone H2A.J OS=Macaca fascicularis GN=H2AFJ PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-488 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417558 ID=CF417558; Name=CF417558; organism=Citrus sinensis; type=EST; length=726bp
GTCACTCGTTCTCTCTCTCTCTCTCTCTCACACACAAAAATCTCAAACGC
TCGCTTTGCTTTATCTCTTTCTTTCTTCTCCGATAATTTTCATCTCAGAA
AAAATTAAAAATAATTAAATAAATAATTAATTAATTTAAAAGAAGCTGTA
GCAATTAGGCGGGAAAATGTCGGGCAAAGGAGCCAAAGGACTGATAACAG
GCAAAACCACCATTAACAACAACAAGGATAAGGACAAGAAGAAACCCGTC
TCCCGTTCTTCTCGTGCTGGTCTTCAGTTCCCAGTGGGAAGGGTCCATCG
TCTACTAAAGGAAAGGGCTGCTGCTCACGGAAGGGTTGGCGCAACAGCTG
CTGTTTATACAGCAGCCATTTTGGAATATCTAACTGCCGAAGTGTTGGAG
TTGGCAGGGAATGCTAGCAAGGATTTGAAGGTCAAACGTATTACTCCAAG
GCATTTGCAGCTTGCTATCCGAGGAGATGAAGAACTTGACACTCTCATTA
AAGGAACCATAGCCGGGTGGAGGAGTTATTCCTCATATCCACAAGTCCCT
CATCAATAAATCCTCCAAAGAGTAGTTCGTGACACCGTCATCCTCTCGGC
TTTGTTTATGTGTGTACTTTTAGCTGTGCTGAAATATCTAAATGAGAAAT
GATGCCAAAGATGTGTTAATGCTAGGAATCTGCATTCTTCAATCCTCATT
TCATGCAGCGACGAATTATGGTGCTT
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