CF417562

Overview
NameCF417562
Unique NameCF417562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417562 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.133e-28
Identity = 57/64 (89.06%), Postives = 63/64 (98.44%), Query Frame = 2
Query:  368 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRK 559
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAEL++++
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 215          
BLAST of CF417562 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.133e-28
Identity = 57/64 (89.06%), Postives = 63/64 (98.44%), Query Frame = 2
Query:  368 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRK 559
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAEL++++
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 215          
BLAST of CF417562 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.133e-28
Identity = 57/64 (89.06%), Postives = 63/64 (98.44%), Query Frame = 2
Query:  368 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRK 559
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAEL++++
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 64          
BLAST of CF417562 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.133e-28
Identity = 57/64 (89.06%), Postives = 63/64 (98.44%), Query Frame = 2
Query:  368 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRK 559
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAEL++++
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 213          
BLAST of CF417562 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.133e-28
Identity = 57/64 (89.06%), Postives = 63/64 (98.44%), Query Frame = 2
Query:  368 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRK 559
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAEL++++
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 213          
BLAST of CF417562 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.195e-26
Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = 2
Query:  347 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRK 559
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPL    DPEAFAEL++++
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKE 72          
BLAST of CF417562 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.429e-19
Identity = 62/170 (36.47%), Postives = 86/170 (50.59%), Query Frame = 2
Query:   74 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELRLRK 559
            PDR  +   F G  PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG  +  P    ELR ++
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKE 222          
BLAST of CF417562 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.429e-19
Identity = 58/155 (37.42%), Postives = 81/155 (52.26%), Query Frame = 2
Query:  101 FSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRK 559
            F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + +   E  R       +     YPGG+FDPLG + DP  F EL+L++
Sbjct:   49 FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDPEKKKYPGGAFDPLGFSKDPAKFEELKLKE 191          
BLAST of CF417562 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.162e-18
Identity = 65/183 (35.52%), Postives = 89/183 (48.63%), Query Frame = 2
Query:   35 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELRLRK 559
            GS+SV+  +    PDR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG  +  P    ELR ++
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKE 222          
BLAST of CF417562 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.687e-18
Identity = 58/153 (37.91%), Postives = 79/153 (51.63%), Query Frame = 2
Query:  107 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLRK 559
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + +  VE  R       +     YPGG+FDPLG + DP  F EL++++
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKE 192          
The following BLAST results are available for this feature:
BLAST of CF417562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB2F_SOLLC5.133e-2889.06Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC5.133e-2889.06Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC5.133e-2889.06Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC5.133e-2889.06Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC5.133e-2889.06Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA8.195e-2677.78Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB12_SOLLC7.429e-1936.47Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB121_HORVU7.429e-1937.42Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB12_PETHY2.162e-1835.52Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB11_SOLLC3.687e-1837.91Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-492 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417562 ID=CF417562; Name=CF417562; organism=Citrus sinensis; type=EST; length=572bp
GAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTT
CTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGTCCA
TTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGTGACTA
CGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGA
ACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTT
GGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGA
GGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTG
ACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATCTTGGCCATC
TGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGC
TGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCT
TTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAGG
TTAAGGAAATCAAGAATGGAAG
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