CF417565

Overview
NameCF417565
Unique NameCF417565
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417565_ssr1 microsatellite CF417565_ssr1:1..14. BLAST: Citrus ESTs to Prunus persica proteins V1
CF417565_ssr20 microsatellite CF417565_ssr20:20..40. BLAST: Citrus ESTs to Prunus persica proteins V1
CF417565_ssr91 microsatellite CF417565_ssr91:91..102. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7970 contig Csv1_Contig7970:80..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417565 vs. ExPASy Swiss-Prot
Match: Y1061_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At1g50610 OS=Arabidopsis thaliana GN=At1g50610 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.574e-11
Identity = 60/189 (31.75%), Postives = 86/189 (45.50%), Query Frame = 3
Query:  138 NSEGDALYALRRSLSDPDNVLQSWDPTLVNPC-----TWFHITCNQDNRVTRLDLGNSNLSGRL-VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP-------------------------SLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTXPTS 611
            +S+ D L   + +L++     +SWDP L +PC      WF + C+  N V  L L    L+G+L +  L  +++L+ +    NN  G +P ++    SL SL L NN  SG+IP                          SLA L  L+ LRLN N+  GQIP        LK+    +NDL G  P S
Sbjct:   45 DSDADCLLRFKDTLANGSE-FRSWDP-LSSPCQGNTANWFGVLCS--NYVWGLQLEGMGLTGKLNLDPLVPMKNLRTISFMNNNFNGPMP-QVKRFTSLKSLYLSNNRFSGEIPADAFLGMPLLKKILLANNAFRGTIPSSLASLPMLLELRLNGNQFQGQIPS--FQQKDLKLASFENNDLDGPIPES 226          
BLAST of CF417565 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.574e-11
Identity = 51/160 (31.87%), Postives = 77/160 (48.12%), Query Frame = 3
Query:  141 SEGDALYALRRSLSDPDNVLQSWDPTLVNPC--TWFHITCNQDNRVTRLDLGNSNLSGRLVPE-LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTXPTS 611
            S+  AL  L   +  P  + Q W     +PC   W  +TC+  +RVT++ L    LSG L    L KL  L  L+L  NN+ G +P +     +L  L+L NN  +G    SL+++  L +L L  N+  GQI  +   + SL  +D S N    + P +
Sbjct:   30 SDTSALNTLFSGMHSPAQLTQ-WTAAAGDPCGQNWRGVTCS-GSRVTQIKLSGLELSGTLGGYMLDKLTSLTELDLSSNNLGGDLPYQFP--PNLQRLNLANNQFTGAASYSLSQITPLKYLNLGHNQFKGQIAIDFSKLDSLTTLDFSFNSFTNSLPAT 185          
BLAST of CF417565 vs. ExPASy Swiss-Prot
Match: SUB_ARATH (Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.280e-11
Identity = 44/131 (33.59%), Postives = 68/131 (51.91%), Query Frame = 3
Query:  225 NPC--TWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTXPTS 611
            +PC   W  + C+  N +T + +    + G L   L     +Q ++   N+I GTIP  L +  S+ +L L +N  +G IP +L+ L  L  L L  N L+G+IP     +S L  +D+SSN L G  P+S
Sbjct:   55 DPCGEKWQGVVCDSSN-ITEIRIPGMKVGGGLSDTLADFSSIQVMDFSSNHISGTIPQALPS--SIRNLSLSSNRFTGNIPFTLSFLSDLSELSLGSNLLSGEIPDYFQQLSKLTKLDLSSNILEGHLPSS 182          
BLAST of CF417565 vs. ExPASy Swiss-Prot
Match: Y2267_ARATH (Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.508e-11
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 3
Query:  279 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTXPTS 611
            L L ++ LSG++  +   L HL+ L L  N   G  P     L +LI LD+ +NN +G IP S+  L  L  L L +N  +G +P   +G+      +VS+N+L G+ P+S
Sbjct:   96 LSLRSNRLSGQIPSDFSNLTHLRSLYLQHNEFSGEFPTSFTQLNNLIRLDISSNNFTGSIPFSVNNLTHLTGLFLGNNGFSGNLPSISLGLVDF---NVSNNNLNGSIPSS 203          
The following BLAST results are available for this feature:
BLAST of CF417565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
Y1061_ARATH5.574e-1131.75Probably inactive leucine-rich repeat receptor-lik... [more]
SRF6_ARATH5.574e-1131.88Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
SUB_ARATH7.280e-1133.59Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB ... [more]
Y2267_ARATH9.508e-1135.14Probable inactive receptor kinase At2g26730 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-495 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417565 ID=CF417565; Name=CF417565; organism=Citrus sinensis; type=EST; length=649bp
GAGAGAGAGAGAGAGCCATGGCGGCGGCGGCGGCGGCGGCGGAAGCGGCA
GTGCAGTGGTTGAGTGTGTGTATAACGTTCAGCATAAGCCTAATAATAAT
AATAGGGAGCAGCAGCTTGGTGGCGGTGGCGAGTGGAAACTCGGAAGGGG
ACGCGCTGTACGCGCTCAGGAGAAGCTTATCAGATCCCGATAACGTGCTT
CAGAGCTGGGATCCAACTCTCGTCAATCCCTGCACTTGGTTTCACATAAC
CTGTAATCAGGACAACCGCGTTACTCGACTGGATTTGGGTAATTCAAATC
TATCCGGCCGTCTCGTCCCTGAACTGGGCAAGCTCGAGCATTTGCAATAC
CTGGAACTTTACAAAAACAACATCCAAGGAACTATCCCTGTCGAGCTCGG
TAACTTGAAGAGCCTCATCAGCTTGGACTTGTATAATAACAACATCTCGG
GGAAAATCCCTCCTTCCTTGGCTAAATTGAAATCTCTTGTTTTTTTGCGG
CTTAACGATAATCGGCTAACTGGACAAATTCCCAGGGAACTTGTTGGAAT
TTCAAGTCTCAAAGTTGTGGATGTTTCNAGCAATGATCTGTGTGGAACAN
TTCCTACAAGCGGACCATTTGAACACATCCCACTCAACACTTTGAGAAT
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