CF417572

Overview
NameCF417572
Unique NameCF417572
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_ENTFA (10 kDa chaperonin OS=Enterococcus faecalis GN=groS PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 9.339e-19
Identity = 44/93 (47.31%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 498
            +KPLGDRV++++   EEKT GGI L S A+ KPQ GEV+AVGEG+ +   TK+ + VK G  V++ KY+GTE+++ G  +LI+   D++  +E
Sbjct:    2 LKPLGDRVVIRVAKEEEKTVGGIVLASVAKEKPQTGEVIAVGEGRVLENGTKVPMEVKIGDTVMFEKYSGTEVKYEGVEYLIVSAKDIIATVE 94          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_DESPS (10 kDa chaperonin OS=Desulfotalea psychrophila GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.339e-19
Identity = 46/93 (49.46%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 498
            I+PL DR+LVK    EEKT GGI +P +A+ KP  G+VVAVG GK      ++ + VK G  V++SKY GT+++ +G + LI+REDD++GI+E
Sbjct:    3 IRPLNDRLLVKRLAEEEKTAGGIIIPDSAKEKPAEGQVVAVGPGKVSDSGERVALQVKEGDLVLFSKYGGTDVKLDGEDFLIMREDDILGIME 95          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_CLOK5 (10 kDa chaperonin OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.339e-19
Identity = 43/92 (46.74%), Postives = 64/92 (69.57%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 498
            I+PLGDRV++K    EE T  GI LP +A+ KPQ  E+VAVG G  +   ++ + VK G +V++SKYAG E++ +G  + ILR+DD++ I+E
Sbjct:    3 IRPLGDRVVIKKIEAEETTKSGIVLPGSAKEKPQEAEIVAVGPGGVIDGKEIKMEVKVGDRVLFSKYAGNEVKIDGVEYTILRQDDILAIIE 94          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_CLOK1 (10 kDa chaperonin OS=Clostridium kluyveri (strain NBRC 12016) GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.339e-19
Identity = 43/92 (46.74%), Postives = 64/92 (69.57%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 498
            I+PLGDRV++K    EE T  GI LP +A+ KPQ  E+VAVG G  +   ++ + VK G +V++SKYAG E++ +G  + ILR+DD++ I+E
Sbjct:    3 IRPLGDRVVIKKIEAEETTKSGIVLPGSAKEKPQEAEIVAVGPGGVIDGKEIKMEVKVGDRVLFSKYAGNEVKIDGVEYTILRQDDILAIIE 94          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_ANOFW (10 kDa chaperonin OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.339e-19
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 495
            +KPLGDR+++++   EEKT  GI LP TA+ KPQ G+VVAVG G+ +    ++   V  G ++I+SKYAGTE++++G  +LILRE D++ ++
Sbjct:    2 LKPLGDRIVIELIQTEEKTASGIVLPDTAKEKPQEGKVVAVGSGRVLDNGERVAPEVSVGDRIIFSKYAGTEVKYDGKEYLILRESDILAVI 93          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_CLOCE (10 kDa chaperonin OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=groS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.220e-18
Identity = 44/92 (47.83%), Postives = 65/92 (70.65%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 498
            IKPLGDRV++K+   EE T  GI LP +A+ KPQ  E+VAVG G  V   ++ + VK G +V+ SKY+GTE++F+G  + IL++ D++ I+E
Sbjct:    3 IKPLGDRVVIKMLESEETTKSGIVLPGSAKEKPQVAEIVAVGPGTVVDGKEVKMEVKVGDRVLTSKYSGTEVKFDGQEYTILKQGDILAIVE 94          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_PELLD (10 kDa chaperonin OS=Pelodictyon luteolum (strain DSM 273) GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.593e-18
Identity = 46/93 (49.46%), Postives = 63/93 (67.74%), Query Frame = 1
Query:  220 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 495
            ++KPL DRV+VK    EEKT GG+++P T + KP  GEVVAVG GK     + L + VK G +V+Y KY+GTE+   G ++LI+RE D+  IL
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPMYGEVVAVGAGKMSDSGQLLAMPVKAGDKVLYGKYSGTEVSVEGEDYLIMRESDIFAIL 94          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_CHLT3 (10 kDa chaperonin OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.593e-18
Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = 1
Query:  220 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 495
            ++KPL DRV+VK    EEKT GG+++P + + KPQ GEVVAVG GK     T + + V+ G +V+Y KY+GTE+  +G ++LI+RE D+  I+
Sbjct:    2 NLKPLADRVIVKPSPAEEKTKGGLYIPDSGKEKPQHGEVVAVGPGKAADNGTVVAMEVQVGQKVLYGKYSGTEVTVDGEDYLIMRESDIFAII 94          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_RUBXD (10 kDa chaperonin OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=groS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.081e-18
Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 1
Query:  226 KPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 498
            KPLG+R LVK+   EEKT  GI LP TA+ KPQ  EV+AVG+ +       DI VK G  V+++KY+GTE+  NG +++IL  DD++G++E
Sbjct:    4 KPLGERALVKLVEREEKTASGIVLPDTAKEKPQTAEVIAVGDSE-------DIKVKEGDVVVFAKYSGTEISLNGDDYMILDADDILGVVE 87          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_LEUCK (10 kDa chaperonin OS=Leuconostoc citreum (strain KM20) GN=groS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.081e-18
Identity = 45/93 (48.39%), Postives = 65/93 (69.89%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 498
            +KPLGDRV++++    E+T GGI L + A+ KP  G+VVAVG G  +   +K D++VK G QV++ KYAG E+ F GA++L L E D+V I+E
Sbjct:    2 LKPLGDRVIIEVTEAAEQTVGGIVLANNAKDKPVTGKVVAVGSGYVLNDGSKQDLTVKSGDQVLFDKYAGQEVSFEGADYLALHEKDIVAIVE 94          
The following BLAST results are available for this feature:
BLAST of CF417572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_ENTFA9.339e-1947.3110 kDa chaperonin OS=Enterococcus faecalis GN=groS... [more]
CH10_DESPS9.339e-1949.4610 kDa chaperonin OS=Desulfotalea psychrophila GN=... [more]
CH10_CLOK59.339e-1946.7410 kDa chaperonin OS=Clostridium kluyveri (strain ... [more]
CH10_CLOK19.339e-1946.7410 kDa chaperonin OS=Clostridium kluyveri (strain ... [more]
CH10_ANOFW9.339e-1946.7410 kDa chaperonin OS=Anoxybacillus flavithermus (s... [more]
CH10_CLOCE1.220e-1847.8310 kDa chaperonin OS=Clostridium cellulolyticum (s... [more]
CH10_PELLD1.593e-1849.4610 kDa chaperonin OS=Pelodictyon luteolum (strain ... [more]
CH10_CHLT31.593e-1847.3110 kDa chaperonin OS=Chloroherpeton thalassium (st... [more]
CH10_RUBXD2.081e-1849.4510 kDa chaperonin OS=Rubrobacter xylanophilus (str... [more]
CH10_LEUCK2.081e-1848.3910 kDa chaperonin OS=Leuconostoc citreum (strain K... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-502 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417572 ID=CF417572; Name=CF417572; organism=Citrus sinensis; type=EST; length=562bp
ATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATCTGCAAGATGGCGAC
AGCTCAGCTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTT
CATTCGATGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGT
GCTCCCAGCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGT
CGTGGCTCCCAAGTACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGG
TGAAAATCAAGACTGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCA
TCTACAGCTCAAACAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGA
GGGGAAGACAGTTGGGAAGACTAAACTGGACATATCTGTGAAGCCTGGGA
CCCAGGTCATCTATTCGAAGTATGCAGGGACTGAGTTGGAGTTCAATGGC
GCAAATCATCTCATATTGAGGGAGGATGACGTAGTTGGCATTCTTGAAAC
AGATGAAATCAAGGATCTTANGCCCCTTAATGACAGAGTTTTCATCAAGG
TTGCTGAGGCTG
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