CF417572

Overview
NameCF417572
Unique NameCF417572
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11181 contig Csv1_Contig11181:79..643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_CHLPD (10 kDa chaperonin OS=Chlorobium phaeobacteroides (strain DSM 266) GN=groS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.103e-19
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  220 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 498
            ++KPL DRV+VK    EEKT GG+ +P T + KPQ GEVVAVG GK     + L++ +K G +V+Y KY+GTE+   G ++LI+RE D+  IL+
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLIIPDTGKEKPQYGEVVAVGTGKVADSGQLLEMQIKVGQKVLYGKYSGTEVSVEGEDYLIMRESDIFAILD 95          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_BACTR (10 kDa chaperonin OS=Bacillus thermoglucosidasius GN=groS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.103e-19
Identity = 46/92 (50.00%), Postives = 69/92 (75.00%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 495
            IKPLGDRV+++I   EEKT  GI LP TA+ KPQ G+VVAVG+G+ +    ++   V+ G ++I+SKYAGTE++++G  +LILRE D++ ++
Sbjct:    2 IKPLGDRVVIEIVETEEKTASGIVLPDTAKEKPQEGKVVAVGKGRVLDNGQRVAPEVEVGDRIIFSKYAGTEVKYDGKEYLILRESDILAVI 93          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_GEOUR (10 kDa chaperonin OS=Geobacter uraniireducens (strain Rf4) GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.441e-19
Identity = 46/93 (49.46%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 498
            ++P+ DR++VK    E KT GGIF+P TA+ KP  GEVVAVG GK     K L + VK G +V++ KY+GTE++  G + LI+REDD++G++E
Sbjct:    3 LRPMQDRIIVKRVEEETKTAGGIFIPETAKEKPMEGEVVAVGNGKRTEDGKVLPLDVKVGDKVLFGKYSGTEIKVEGQDFLIMREDDILGVIE 95          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_GEOMG (10 kDa chaperonin OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.441e-19
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 498
            ++PL DR+LVK    E+ T GGIF+P TA+ KPQ GE+VAVG GK     K + I +K G +V++ KYAGT+++  G + LI+REDD++G++E
Sbjct:    3 LRPLQDRILVKRIEEEQVTAGGIFIPDTAKEKPQRGEIVAVGNGKKTEDGKVIPIDLKVGDKVLFGKYAGTDIKVEGEDFLIMREDDILGVIE 95          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_DESAA (10 kDa chaperonin OS=Desulfatibacillum alkenivorans (strain AK-01) GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.441e-19
Identity = 46/93 (49.46%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 498
            ++PL DR+LVK    E KT GGI +P TA+ KP  GE+VAVG G+     TK+ + VK G +V++ KY+GTE++  G  +LI+REDDV+GI++
Sbjct:    3 LQPLADRILVKRLAEETKTKGGIIIPDTAKEKPAEGEIVAVGPGRNAEDGTKIALEVKVGDRVLFGKYSGTEVKIEGEEYLIMREDDVLGIVQ 95          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_CLOAB (10 kDa chaperonin OS=Clostridium acetobutylicum GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.441e-19
Identity = 47/92 (51.09%), Postives = 65/92 (70.65%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 498
            I+PLGDRV++K    EE T  GI LPS+A+ KPQ  EVVAVG G  V   ++ + VK G +V +SKY+GTE++ +    LILR+DD++GI+E
Sbjct:    3 IRPLGDRVVIKRLEAEETTKSGIVLPSSAKEKPQMAEVVAVGPGGVVDGKEIQMQVKTGDKVFFSKYSGTEIKVDNEELLILRQDDILGIVE 94          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_LACPL (10 kDa chaperonin OS=Lactobacillus plantarum GN=groS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.882e-19
Identity = 46/91 (50.55%), Postives = 69/91 (75.82%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGI 492
            +KPLGDRV+++ +  EE+T GGI + + A+ KPQ+G+VVAV +G+ +   TK+D SVK G QV++ KYAGTE+++ GA +L+L E D+V I
Sbjct:    2 LKPLGDRVILQQQEEEEQTIGGIVIANNAKEKPQSGKVVAVNDGRVLDNGTKVDPSVKVGDQVLFDKYAGTEVKYQGAKYLVLHEKDIVAI 92          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_CLOB8 (10 kDa chaperonin OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=groS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.882e-19
Identity = 46/93 (49.46%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  220 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 498
            +IKPLG+RV++K    EEKT  GI L  TA+ +PQ  EVVAVG G  V   ++ + VK G +V+YSKYAGTE++ +G  + IL++DD++ I+E
Sbjct:    2 NIKPLGERVVIKKLEAEEKTKSGIVLTGTAKERPQEAEVVAVGPGAVVDGNRVAMEVKVGDKVLYSKYAGTEVKVDGEEYTILKQDDILAIVE 94          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_CHLPB (10 kDa chaperonin OS=Chlorobium phaeobacteroides (strain BS1) GN=groS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.882e-19
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  220 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 498
            ++KPL DRV+VK    EEKT GG+++P T + KPQ GEVVAVG GK     + L++ V  G +V+Y KY+GTE+   G ++LI+RE D+  IL+
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPQYGEVVAVGAGKVADSGQLLEMQVAVGNKVLYGKYSGTEVAVEGEDYLIMRESDIFAILD 95          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_BACCN (10 kDa chaperonin OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=groS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.458e-19
Identity = 43/92 (46.74%), Postives = 68/92 (73.91%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 495
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G ++I+SKYAGTE+++ G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDRIIFSKYAGTEVKYEGTDYLILRESDILAVI 93          
The following BLAST results are available for this feature:
BLAST of CF417572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_CHLPD1.103e-1948.9410 kDa chaperonin OS=Chlorobium phaeobacteroides (... [more]
CH10_BACTR1.103e-1950.0010 kDa chaperonin OS=Bacillus thermoglucosidasius ... [more]
CH10_GEOUR1.441e-1949.4610 kDa chaperonin OS=Geobacter uraniireducens (str... [more]
CH10_GEOMG1.441e-1949.4610 kDa chaperonin OS=Geobacter metallireducens (st... [more]
CH10_DESAA1.441e-1949.4610 kDa chaperonin OS=Desulfatibacillum alkenivoran... [more]
CH10_CLOAB1.441e-1951.0910 kDa chaperonin OS=Clostridium acetobutylicum GN... [more]
CH10_LACPL1.882e-1950.5510 kDa chaperonin OS=Lactobacillus plantarum GN=gr... [more]
CH10_CLOB81.882e-1949.4610 kDa chaperonin OS=Clostridium beijerinckii (str... [more]
CH10_CHLPB1.882e-1948.9410 kDa chaperonin OS=Chlorobium phaeobacteroides (... [more]
CH10_BACCN2.458e-1946.7410 kDa chaperonin OS=Bacillus cereus subsp. cytoto... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-502 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417572 ID=CF417572; Name=CF417572; organism=Citrus sinensis; type=EST; length=562bp
ATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATCTGCAAGATGGCGAC
AGCTCAGCTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTT
CATTCGATGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGT
GCTCCCAGCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGT
CGTGGCTCCCAAGTACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGG
TGAAAATCAAGACTGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCA
TCTACAGCTCAAACAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGA
GGGGAAGACAGTTGGGAAGACTAAACTGGACATATCTGTGAAGCCTGGGA
CCCAGGTCATCTATTCGAAGTATGCAGGGACTGAGTTGGAGTTCAATGGC
GCAAATCATCTCATATTGAGGGAGGATGACGTAGTTGGCATTCTTGAAAC
AGATGAAATCAAGGATCTTANGCCCCTTAATGACAGAGTTTTCATCAAGG
TTGCTGAGGCTG
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