CF417572

Overview
NameCF417572
Unique NameCF417572
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11181 contig Csv1_Contig11181:79..643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_LISMC (10 kDa chaperonin OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.475e-19
Identity = 44/91 (48.35%), Postives = 66/91 (72.53%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGI 492
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ+G++VAVG G+ +   TK  + V  G  VI++KY+GTE+ + G ++LILRE D++ I
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVTYEGTDYLILRESDILAI 92          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_LISIN (10 kDa chaperonin OS=Listeria innocua GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.475e-19
Identity = 44/91 (48.35%), Postives = 66/91 (72.53%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGI 492
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ+G++VAVG G+ +   TK  + V  G  VI++KY+GTE+ + G ++LILRE D++ I
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVTYEGTDYLILRESDILAI 92          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_LACRJ (10 kDa chaperonin OS=Lactobacillus reuteri (strain JCM 1112) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.475e-19
Identity = 47/93 (50.54%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 498
            +KPLGDRV++K +T EEKT GGI L S  + KP  G+V+AVGEG+T+    KL  +VK G +V++ KYAG E+E+NG   L++   D+V I+E
Sbjct:    2 LKPLGDRVVLKAETEEEKTVGGIVLASNVKEKPTTGKVIAVGEGRTLENGQKLAPAVKEGDRVLFDKYAGNEVEYNGEKFLVVHAKDLVAIVE 94          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_LACRD (10 kDa chaperonin OS=Lactobacillus reuteri (strain DSM 20016) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.475e-19
Identity = 47/93 (50.54%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 498
            +KPLGDRV++K +T EEKT GGI L S  + KP  G+V+AVGEG+T+    KL  +VK G +V++ KYAG E+E+NG   L++   D+V I+E
Sbjct:    2 LKPLGDRVVLKAETEEEKTVGGIVLASNVKEKPTTGKVIAVGEGRTLENGQKLAPAVKEGDRVLFDKYAGNEVEYNGEKFLVVHAKDLVAIVE 94          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_GEOLS (10 kDa chaperonin OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.475e-19
Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 498
            ++PL DR++VK    EEKT GG+F+P TA+ KPQ GEV+AVG GK   + K   + VK G  +++ KYAGTE++ +G   L++REDDV+ ++E
Sbjct:    3 LRPLHDRIIVKRLEGEEKTAGGLFIPDTAKEKPQKGEVIAVGNGKKNDEGKCAPLDVKVGDSILFGKYAGTEVKVDGDEFLMMREDDVLAVIE 95          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_CYAP4 (10 kDa chaperonin OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.475e-19
Identity = 46/94 (48.94%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  217 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 495
            +++KPLGDRV VK+   EEKT GGI LP TA+ KPQ GE+VAVG GK     ++ +  VK G +V+YSKYAGT+++     +++L E D++ I+
Sbjct:    9 STVKPLGDRVFVKVSASEEKTAGGILLPDTAKEKPQVGEIVAVGPGKRNDDGSRQEPEVKIGDKVLYSKYAGTDIKLGTEEYVLLSEKDILAIV 102          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_BACP3 (10 kDa chaperonin OS=Bacillus PS3 GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.475e-19
Identity = 44/92 (47.83%), Postives = 66/92 (71.74%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 495
            +KPLGDR+++++   EEKT  GI LP TA+ KPQ G VVAVG G+ +    ++    K G +VI+SKYAGTE++++G  +LILRE D++ ++
Sbjct:    2 LKPLGDRIVIEVVETEEKTASGIVLPDTAKEKPQEGRVVAVGAGRVLDNGQRIGRKSKVGDRVIFSKYAGTEVKYDGKEYLILRESDILAVI 93          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_BACHK (10 kDa chaperonin OS=Bacillus thuringiensis subsp. konkukian GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.475e-19
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 495
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_BACCZ (10 kDa chaperonin OS=Bacillus cereus (strain ZK / E33L) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.475e-19
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 495
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_BACCQ (10 kDa chaperonin OS=Bacillus cereus (strain Q1) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.475e-19
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 495
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93          
The following BLAST results are available for this feature:
BLAST of CF417572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_LISMC5.475e-1948.3510 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH10_LISIN5.475e-1948.3510 kDa chaperonin OS=Listeria innocua GN=groS PE=3... [more]
CH10_LACRJ5.475e-1950.5410 kDa chaperonin OS=Lactobacillus reuteri (strain... [more]
CH10_LACRD5.475e-1950.5410 kDa chaperonin OS=Lactobacillus reuteri (strain... [more]
CH10_GEOLS5.475e-1948.3910 kDa chaperonin OS=Geobacter lovleyi (strain ATC... [more]
CH10_CYAP45.475e-1948.9410 kDa chaperonin OS=Cyanothece sp. (strain PCC 74... [more]
CH10_BACP35.475e-1947.8310 kDa chaperonin OS=Bacillus PS3 GN=groS PE=3 SV=... [more]
CH10_BACHK5.475e-1946.7410 kDa chaperonin OS=Bacillus thuringiensis subsp.... [more]
CH10_BACCZ5.475e-1946.7410 kDa chaperonin OS=Bacillus cereus (strain ZK / ... [more]
CH10_BACCQ5.475e-1946.7410 kDa chaperonin OS=Bacillus cereus (strain Q1) G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-502 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417572 ID=CF417572; Name=CF417572; organism=Citrus sinensis; type=EST; length=562bp
ATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATCTGCAAGATGGCGAC
AGCTCAGCTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTT
CATTCGATGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGT
GCTCCCAGCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGT
CGTGGCTCCCAAGTACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGG
TGAAAATCAAGACTGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCA
TCTACAGCTCAAACAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGA
GGGGAAGACAGTTGGGAAGACTAAACTGGACATATCTGTGAAGCCTGGGA
CCCAGGTCATCTATTCGAAGTATGCAGGGACTGAGTTGGAGTTCAATGGC
GCAAATCATCTCATATTGAGGGAGGATGACGTAGTTGGCATTCTTGAAAC
AGATGAAATCAAGGATCTTANGCCCCTTAATGACAGAGTTTTCATCAAGG
TTGCTGAGGCTG
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