CF417572

Overview
NameCF417572
Unique NameCF417572
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_LACH4 (10 kDa chaperonin OS=Lactobacillus helveticus (strain DPC 4571) GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.151e-19
Identity = 46/91 (50.55%), Postives = 63/91 (69.23%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGI 492
            ++P+GDRV+VK+K  EEKT GGI L S A+ KP  GEVVAVGEG       K+ +SVK G  V+Y +Y+GT +E+ G  +L+L E D++ I
Sbjct:    2 LQPIGDRVIVKVKDEEEKTVGGIVLASNAKKKPTEGEVVAVGEGAYASNGEKIPMSVKKGDVVLYDRYSGTNVEYEGEKYLVLHEKDILAI 92          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_GEOTN (10 kDa chaperonin OS=Geobacillus thermodenitrificans (strain NG80-2) GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.151e-19
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 495
            +KPLGDR+++++   EEKT  GI LP TA+ KPQ G VVAVG G+ +    ++   V+ G ++I+SKYAGTE++++G  +LILRE D++ ++
Sbjct:    2 LKPLGDRIVIEVVETEEKTASGIVLPDTAKEKPQEGRVVAVGTGRVLDNGQRVAPEVEVGDRIIFSKYAGTEVKYDGKEYLILRESDILAVI 93          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_GEOSW (10 kDa chaperonin OS=Geobacillus sp. (strain WCH70) GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.151e-19
Identity = 44/92 (47.83%), Postives = 68/92 (73.91%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 495
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G VVAVG+G+ +   + +   V+ G ++I+SKYAGTE++++G  +LILRE D++ ++
Sbjct:    2 LKPLGDRVVIEVIETEEKTASGIVLPDTAKEKPQEGRVVAVGKGRVLDSGECVAPEVEVGDRIIFSKYAGTEVKYDGKEYLILRESDILAVI 93          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_GEOKA (10 kDa chaperonin OS=Geobacillus kaustophilus GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.151e-19
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 495
            +KPLGDR+++++   EEKT  GI LP TA+ KPQ G VVAVG G+ +    ++   V+ G ++I+SKYAGTE++++G  +LILRE D++ ++
Sbjct:    1 MKPLGDRIVIEVVETEEKTASGIVLPDTAKEKPQEGRVVAVGAGRVLDNGQRIAPEVEVGDRIIFSKYAGTEVKYDGKEYLILRESDILAVI 92          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_BACSU (10 kDa chaperonin OS=Bacillus subtilis GN=groS PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 7.151e-19
Identity = 42/92 (45.65%), Postives = 67/92 (72.83%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 495
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ G++VA G G+ +    ++ + VK G ++I+SKYAGTE+++ G  +LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVESEEKTASGIVLPDSAKEKPQEGKIVAAGSGRVLESGERVALEVKEGDRIIFSKYAGTEVKYEGTEYLILRESDILAVI 93          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_BACA2 (10 kDa chaperonin OS=Bacillus amyloliquefaciens (strain FZB42) GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.151e-19
Identity = 42/92 (45.65%), Postives = 67/92 (72.83%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 495
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ G++VA G G+ +    ++ + VK G ++I+SKYAGTE+++ G  +LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVESEEKTASGIVLPDSAKEKPQEGKIVAAGSGRVLESGERVALEVKEGDRIIFSKYAGTEVKYEGTEYLILRESDILAVI 93          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_TETHA (10 kDa chaperonin OS=Tetragenococcus halophilus GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.339e-19
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 498
            +KPLGDRVL+++   EEKT GGI L STAQ KPQ G+VVAVG G+T+   +L  + V  G  V++ KYAG+E++++G +++I    D+V I+E
Sbjct:    2 LKPLGDRVLIEVSEEEEKTVGGIVLASTAQEKPQTGKVVAVGPGRTLDNGELATVPVNVGDTVLFEKYAGSEVKYDGQDYMIFSAKDLVAIVE 94          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_SYNY3 (10 kDa chaperonin OS=Synechocystis sp. (strain PCC 6803) GN=groS PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 9.339e-19
Identity = 46/91 (50.55%), Postives = 63/91 (69.23%), Query Frame = 1
Query:  217 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVV 486
            +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEVV VG GK     T   + VK G +V+YSKYAGT+++  G ++++L E D++
Sbjct:    9 STVKPLGDRVFVKVSPAEEKTAGGILLPDNAKEKPQIGEVVQVGPGKRNDDGTYSPVEVKVGDKVLYSKYAGTDIKLGGDDYVLLTEKDIL 99          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_PELPD (10 kDa chaperonin OS=Pelobacter propionicus (strain DSM 2379) GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.339e-19
Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  223 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 498
            ++PL DR+LVK    E KT GG+F+P TA+ KPQ GEVVA G GK     K L + VK G +V++ KY+GTE++ +G + L++REDD++ ++E
Sbjct:    3 LRPLHDRILVKRVEEETKTAGGLFIPETAKEKPQRGEVVAAGNGKKTEDGKVLPLDVKVGDKVLFGKYSGTEVKVDGEDFLMMREDDILAVVE 95          
BLAST of CF417572 vs. ExPASy Swiss-Prot
Match: CH10_NOSP7 (10 kDa chaperonin OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.339e-19
Identity = 42/94 (44.68%), Postives = 67/94 (71.28%), Query Frame = 1
Query:  217 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 495
            +++KPL DRV VK+   EEKT GG++LP TA+ KPQ GEVVA+G GK     ++ ++ +K G +V+YSKYAGT+++     +++L E D++ ++
Sbjct:    9 STVKPLSDRVFVKVNASEEKTAGGLYLPDTAKEKPQVGEVVALGPGKRNEDGSRQELEIKVGDKVLYSKYAGTDIKLGTEEYVLLSEKDILAVV 102          
The following BLAST results are available for this feature:
BLAST of CF417572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_LACH47.151e-1950.5510 kDa chaperonin OS=Lactobacillus helveticus (str... [more]
CH10_GEOTN7.151e-1946.7410 kDa chaperonin OS=Geobacillus thermodenitrifica... [more]
CH10_GEOSW7.151e-1947.8310 kDa chaperonin OS=Geobacillus sp. (strain WCH70... [more]
CH10_GEOKA7.151e-1946.7410 kDa chaperonin OS=Geobacillus kaustophilus GN=g... [more]
CH10_BACSU7.151e-1945.6510 kDa chaperonin OS=Bacillus subtilis GN=groS PE=... [more]
CH10_BACA27.151e-1945.6510 kDa chaperonin OS=Bacillus amyloliquefaciens (s... [more]
CH10_TETHA9.339e-1949.4610 kDa chaperonin OS=Tetragenococcus halophilus GN... [more]
CH10_SYNY39.339e-1950.5510 kDa chaperonin OS=Synechocystis sp. (strain PCC... [more]
CH10_PELPD9.339e-1948.3910 kDa chaperonin OS=Pelobacter propionicus (strai... [more]
CH10_NOSP79.339e-1944.6810 kDa chaperonin OS=Nostoc punctiforme (strain AT... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-502 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417572 ID=CF417572; Name=CF417572; organism=Citrus sinensis; type=EST; length=562bp
ATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATCTGCAAGATGGCGAC
AGCTCAGCTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTT
CATTCGATGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGT
GCTCCCAGCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGT
CGTGGCTCCCAAGTACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGG
TGAAAATCAAGACTGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCA
TCTACAGCTCAAACAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGA
GGGGAAGACAGTTGGGAAGACTAAACTGGACATATCTGTGAAGCCTGGGA
CCCAGGTCATCTATTCGAAGTATGCAGGGACTGAGTTGGAGTTCAATGGC
GCAAATCATCTCATATTGAGGGAGGATGACGTAGTTGGCATTCTTGAAAC
AGATGAAATCAAGGATCTTANGCCCCTTAATGACAGAGTTTTCATCAAGG
TTGCTGAGGCTG
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