CF417574

Overview
NameCF417574
Unique NameCF417574
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length453
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1_SCHPO (Protein rer1 OS=Schizosaccharomyces pombe GN=rer1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.280e-21
Identity = 38/102 (37.25%), Postives = 58/102 (56.86%), Query Frame = 1
Query:   70 RMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEFEA------LDGASLPTKGSDEFRPFIRRLPEFKFWYA 357
            R++++++DR+ P+   RW+      +++ +R+  V+G+YIV Y              +PK DP  E       ++   LPT   DEFRPFIRRLPEFKFWY+
Sbjct:   20 RLYRHWVDRTIPYTTYRWLTVSGLIALFFIRILLVRGWYIVCYTLAIYLLNLFLAFLTPKFDPSVEQAMKDEEIEEGVLPTSKDDEFRPFIRRLPEFKFWYS 121          

HSP 2 Score: 37.3502 bits (85), Expect = 4.280e-21
Identity = 16/27 (59.26%), Postives = 20/27 (74.07%), Query Frame = 2
Query:  359 STKAFCVAFLMTFFSIFDVPVFWPILL 439
            S +A   A + +FF IFDVPVFWPIL+
Sbjct:  122 SMRATLFALVASFFRIFDVPVFWPILV 148          
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1_SACPS (Protein RER1 OS=Saccharomyces pastorianus GN=RER1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-19
Identity = 42/114 (36.84%), Postives = 62/114 (54.39%), Query Frame = 1
Query:   19 DAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEFEALDGASLPTKG--SDEFRPFIRRLPEFKFWY 354
            + AS+ A IAK  S    ++Q+YLD+ TPH  QRW        ++++R+   +G+Y++ Y              +PK D   +  +  +    G  S+EFRPFIRRLPEFKFWY
Sbjct:   10 NGASSNALIAKMNSA-KLLYQHYLDKVTPHAKQRWAVLGGLLCLFMVRITMAEGWYVICYGLGLFLLNQFLAFLTPKFDMSLQQDEENNELEAGEKSEEFRPFIRRLPEFKFWY 122          

HSP 2 Score: 39.2762 bits (90), Expect = 1.004e-19
Identity = 15/27 (55.56%), Postives = 22/27 (81.48%), Query Frame = 2
Query:  359 STKAFCVAFLMTFFSIFDVPVFWPILL 439
            S +A  ++ +++ FSIFD+PVFWPILL
Sbjct:  124 SIRATVISLVLSLFSIFDIPVFWPILL 150          
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1_YEAST (Protein RER1 OS=Saccharomyces cerevisiae GN=RER1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 6.322e-19
Identity = 35/107 (32.71%), Postives = 56/107 (52.34%), Query Frame = 1
Query:   40 PIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEFEALDGASLPTKG--SDEFRPFIRRLPEFKFWY 354
            P+    +    ++Q+YLD+ TPH  +RW        ++++R+   +G+Y++ Y              +PK D   +  +  +    G  S+EFRPFIRRLPEFKFWY
Sbjct:   16 PLITKMNTMKLLYQHYLDKVTPHAKERWAVLGGLLCLFMVRITMAEGWYVICYGLGLFLLNQFLAFLTPKFDMSLQQDEENNELEAGEKSEEFRPFIRRLPEFKFWY 122          

HSP 2 Score: 40.4318 bits (93), Expect = 6.322e-19
Identity = 16/27 (59.26%), Postives = 22/27 (81.48%), Query Frame = 2
Query:  359 STKAFCVAFLMTFFSIFDVPVFWPILL 439
            S +A  ++ L++ FSIFD+PVFWPILL
Sbjct:  124 SIRATVISLLLSLFSIFDIPVFWPILL 150          
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1_DICDI (Protein RER1 homolog OS=Dictyostelium discoideum GN=rer1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.823e-16
Identity = 40/104 (38.46%), Postives = 56/104 (53.85%), Query Frame = 1
Query:   67 SRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQG-FYIVTYXXXXXXXXXXXXXXSPKIDPEFEALDGASLPT---KGSDEFRPFIRRLPEFKFWYAIHK 366
            +R +Q  ++++     QRW      + +Y+LRV    G +Y++TY              SPK DPE E   G SLPT   +  DE +PFIRRLPEF FW++I K
Sbjct:   23 ARKYQNLIEKTISFIPQRWAFVGFLSFLYILRVSLSSGGWYVITYALGIFLLTRFIAFLSPKWDPELEEDSGDSLPTTLNRNDDEAKPFIRRLPEFLFWHSIFK 126          

HSP 2 Score: 33.113 bits (74), Expect = 5.823e-16
Identity = 13/25 (52.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  365 KAFCVAFLMTFFSIFDVPVFWPILL 439
            KA  ++   TF    D+PVFWPILL
Sbjct:  126 KALFISIFCTFIPFLDLPVFWPILL 150          
The following BLAST results are available for this feature:
BLAST of CF417574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RER1_SCHPO4.280e-2137.25Protein rer1 OS=Schizosaccharomyces pombe GN=rer1 ... [more]
RER1_SACPS1.004e-1936.84Protein RER1 OS=Saccharomyces pastorianus GN=RER1 ... [more]
RER1_YEAST6.322e-1932.71Protein RER1 OS=Saccharomyces cerevisiae GN=RER1 P... [more]
RER1_DICDI5.823e-1638.46Protein RER1 homolog OS=Dictyostelium discoideum G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-504 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417574 ID=CF417574; Name=CF417574; organism=Citrus sinensis; type=EST; length=453bp
ATGGAAGGACCAGGGGCTGATGCTGCTTCTGCGGTGGCCCCCATTGCAAA
GTGGAGAAGTGATTTCTCGAGGATGTTTCAGTACTATCTGGATCGATCAA
CCCCGCATCCATTGCAGAGGTGGATTGGAACTCTTGCCGCTGCGTCGATT
TACTTGTTGCGTGTTTACTGTGTTCAAGGGTTTTACATTGTCACATATGG
CTTAGGAATCTATATTCTGAATTTGTTGATTGGATTCCTATCGCCGAAGA
TTGATCCGGAGTTTGAAGCCTTGGATGGAGCTTCATTGCCAACTAAAGGG
TCTGATGAGTTTAGGCCATTCATTCGCCGTCTTCCTGAGTTTAAGTTCTG
GTATGCCATCCACAAAGGCTTTCTGTGTGGCTTTCCTTATGACCTTCTTT
TCTATATTTGATGTTCCTGTCTTTTGGCCCATATTGCTGTGCCTATTGGG
ATT
back to top