CF417574
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1_SCHPO (Protein rer1 OS=Schizosaccharomyces pombe GN=rer1 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 4.280e-21 Identity = 38/102 (37.25%), Postives = 58/102 (56.86%), Query Frame = 1 Query: 70 RMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEFEA------LDGASLPTKGSDEFRPFIRRLPEFKFWYA 357 R++++++DR+ P+ RW+ +++ +R+ V+G+YIV Y +PK DP E ++ LPT DEFRPFIRRLPEFKFWY+ Sbjct: 20 RLYRHWVDRTIPYTTYRWLTVSGLIALFFIRILLVRGWYIVCYTLAIYLLNLFLAFLTPKFDPSVEQAMKDEEIEEGVLPTSKDDEFRPFIRRLPEFKFWYS 121 HSP 2 Score: 37.3502 bits (85), Expect = 4.280e-21 Identity = 16/27 (59.26%), Postives = 20/27 (74.07%), Query Frame = 2 Query: 359 STKAFCVAFLMTFFSIFDVPVFWPILL 439 S +A A + +FF IFDVPVFWPIL+ Sbjct: 122 SMRATLFALVASFFRIFDVPVFWPILV 148
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1_SACPS (Protein RER1 OS=Saccharomyces pastorianus GN=RER1 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-19 Identity = 42/114 (36.84%), Postives = 62/114 (54.39%), Query Frame = 1 Query: 19 DAASAVAPIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEFEALDGASLPTKG--SDEFRPFIRRLPEFKFWY 354 + AS+ A IAK S ++Q+YLD+ TPH QRW ++++R+ +G+Y++ Y +PK D + + + G S+EFRPFIRRLPEFKFWY Sbjct: 10 NGASSNALIAKMNSA-KLLYQHYLDKVTPHAKQRWAVLGGLLCLFMVRITMAEGWYVICYGLGLFLLNQFLAFLTPKFDMSLQQDEENNELEAGEKSEEFRPFIRRLPEFKFWY 122 HSP 2 Score: 39.2762 bits (90), Expect = 1.004e-19 Identity = 15/27 (55.56%), Postives = 22/27 (81.48%), Query Frame = 2 Query: 359 STKAFCVAFLMTFFSIFDVPVFWPILL 439 S +A ++ +++ FSIFD+PVFWPILL Sbjct: 124 SIRATVISLVLSLFSIFDIPVFWPILL 150
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1_YEAST (Protein RER1 OS=Saccharomyces cerevisiae GN=RER1 PE=1 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 6.322e-19 Identity = 35/107 (32.71%), Postives = 56/107 (52.34%), Query Frame = 1 Query: 40 PIAKWRSDFSRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQGFYIVTYXXXXXXXXXXXXXXSPKIDPEFEALDGASLPTKG--SDEFRPFIRRLPEFKFWY 354 P+ + ++Q+YLD+ TPH +RW ++++R+ +G+Y++ Y +PK D + + + G S+EFRPFIRRLPEFKFWY Sbjct: 16 PLITKMNTMKLLYQHYLDKVTPHAKERWAVLGGLLCLFMVRITMAEGWYVICYGLGLFLLNQFLAFLTPKFDMSLQQDEENNELEAGEKSEEFRPFIRRLPEFKFWY 122 HSP 2 Score: 40.4318 bits (93), Expect = 6.322e-19 Identity = 16/27 (59.26%), Postives = 22/27 (81.48%), Query Frame = 2 Query: 359 STKAFCVAFLMTFFSIFDVPVFWPILL 439 S +A ++ L++ FSIFD+PVFWPILL Sbjct: 124 SIRATVISLLLSLFSIFDIPVFWPILL 150
BLAST of CF417574 vs. ExPASy Swiss-Prot
Match: RER1_DICDI (Protein RER1 homolog OS=Dictyostelium discoideum GN=rer1 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 5.823e-16 Identity = 40/104 (38.46%), Postives = 56/104 (53.85%), Query Frame = 1 Query: 67 SRMFQYYLDRSTPHPLQRWIGTLAAASIYLLRVYCVQG-FYIVTYXXXXXXXXXXXXXXSPKIDPEFEALDGASLPT---KGSDEFRPFIRRLPEFKFWYAIHK 366 +R +Q ++++ QRW + +Y+LRV G +Y++TY SPK DPE E G SLPT + DE +PFIRRLPEF FW++I K Sbjct: 23 ARKYQNLIEKTISFIPQRWAFVGFLSFLYILRVSLSSGGWYVITYALGIFLLTRFIAFLSPKWDPELEEDSGDSLPTTLNRNDDEAKPFIRRLPEFLFWHSIFK 126 HSP 2 Score: 33.113 bits (74), Expect = 5.823e-16 Identity = 13/25 (52.00%), Postives = 16/25 (64.00%), Query Frame = 2 Query: 365 KAFCVAFLMTFFSIFDVPVFWPILL 439 KA ++ TF D+PVFWPILL Sbjct: 126 KALFISIFCTFIPFLDLPVFWPILL 150 The following BLAST results are available for this feature:
BLAST of CF417574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417574 ID=CF417574; Name=CF417574; organism=Citrus sinensis; type=EST; length=453bpback to top |