CF417578 | Citrus Genome Database

Overview


Name	CF417578
Unique Name	CF417578
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	652

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A2_VITVI (40S ribosomal protein S3a-2 OS=Vitis vinifera GN=GSVIVT00031140001 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.935e-58
Identity = 69/83 (83.13%), Postives = 72/83 (86.75%), Query Frame = 3

Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME 533
            NQ K+T YAQ+ QI QIRRKMREIM   AASCDLK LV  FI E+IGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME
Sbjct:  148 NQNKKTSYAQSSQIRQIRRKMREIMTTQAASCDLKELVRKFIPEMIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME 230

HSP 2 Score: 98.5969 bits (244), Expect = 4.935e-58
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 2

Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            KI L AE V GK VLT FWGM+FTTDKL SLVR W TLIEA+VDVKTTDN+TLR+FCI FT
Sbjct:   83 KIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIAFT 143

HSP 3 Score: 33.4982 bits (75), Expect = 4.935e-58
Identity = 17/28 (60.71%), Postives = 20/28 (71.43%), Query Frame = 1

Query:    1 KIASEGLKHXVFESITSVIFSTEEEHAY 84
            KIASEGLKH VFE I+      +E+HAY
Sbjct:   55 KIASEGLKHRVFE-ISLADLQNDEDHAY 81

[Close]

BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_CHLRE (40S ribosomal protein S3a OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_168484 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.660e-55
Identity = 68/98 (69.39%), Postives = 80/98 (81.63%), Query Frame = 3

Query:  288 QVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRP 581
            Q+KRTCYAQ+ QI QIR+KM EI+   A SCDLK LV  FI E IG++IEK+   IYPLQN FIRKVK+LKAPKFD+ KLMEVHGDYSE+VG K++RP
Sbjct:  149 QIKRTCYAQSAQIRQIRKKMMEIITREATSCDLKELVAKFIPESIGKDIEKSCQGIYPLQNTFIRKVKVLKAPKFDITKLMEVHGDYSEEVGAKIERP 246

HSP 2 Score: 90.1225 bits (222), Expect = 4.660e-55
Identity = 42/61 (68.85%), Postives = 48/61 (78.69%), Query Frame = 2

Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  E V G+  LT FWGM+FTTDKL SLVR W TLIEA+VDVKTTD +TLR+FCI FT
Sbjct:   83 KMRLRVEDVQGRNCLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDGYTLRVFCISFT 143

HSP 3 Score: 21.557 bits (44), Expect = 4.660e-55
Identity = 11/25 (44.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:    1 KIASEGLKHXVFESITSVIFSTEEE 75
            KIASE LK  VFE   + +   E++
Sbjct:   55 KIASEALKGRVFEVSLADLQKNEDD 79

[Close]

BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_OSTLU (40S ribosomal protein S3a OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_28528 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 7.951e-51
Identity = 71/110 (64.55%), Postives = 81/110 (73.64%), Query Frame = 3

Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPXDXPMPE 602
            R  +Q KRTCYAQ+ QI +IR KM EI+     +CDLK LV  FI EVIG+EIEK+ + IYPLQNV+IRKVKILKAPKFDL KLMEVHGDYS E VG  V RP +    E
Sbjct:  145 RRMDQAKRTCYAQSAQIRKIRAKMVEIITRECTTCDLKELVLKFIPEVIGKEIEKSCAGIYPLQNVYIRKVKILKAPKFDLTKLMEVHGDYSGEAVGEAVARPVEEKAEE 254

HSP 2 Score: 86.2705 bits (212), Expect = 7.951e-51
Identity = 41/61 (67.21%), Postives = 48/61 (78.69%), Query Frame = 2

Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  E V GK VLT F GM+FTTDK+ SLVR W +LIE +VDVKTTD +TLR+FCIGFT
Sbjct:   83 KMKLKCEDVQGKNVLTNFAGMDFTTDKIRSLVRKWFSLIECFVDVKTTDGYTLRVFCIGFT 143

HSP 3 Score: 22.7126 bits (47), Expect = 7.951e-51
Identity = 11/28 (39.29%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 KIASEGLKHXVFESITSVIFSTEEEHAY 84
            KIAS+GLK  +FE I+    + +E+ ++
Sbjct:   55 KIASDGLKGRIFE-ISLADLNNDEDQSF 81

[Close]

BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_LENED (40S ribosomal protein S1 OS=Lentinula edodes GN=RPS1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 4.143e-49
Identity = 62/112 (55.36%), Postives = 83/112 (74.11%), Query Frame = 3

Query:  258 ALDSPXRLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPXDXP 593
            A+    R P QV++T YAQ+ Q+ +IR+KM EIM   A +CDLK LV+ F+ E IGREIEKA+ SIYPLQNV++RK KILKAPKFD+ KLME+HG+ +++ G K+ +    P
Sbjct:  139 AIGFTKRRPTQVRKTTYAQSSQVREIRKKMFEIMTREATNCDLKELVQKFVPEAIGREIEKASRSIYPLQNVYVRKAKILKAPKFDVSKLMELHGESTDETGTKIAKDFKEP 250

HSP 2 Score: 82.4185 bits (202), Expect = 4.143e-49
Identity = 41/61 (67.21%), Postives = 46/61 (75.41%), Query Frame = 2

Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            KI L  + V GK  LT F GM+FT+DKL SLVR W TLIEA+VDVKTTD + LRLF IGFT
Sbjct:   83 KIKLRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKWQTLIEAHVDVKTTDGYLLRLFAIGFT 143

[Close]

BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_TORRU (40S ribosomal protein S3a OS=Tortula ruralis GN=RPS3A PE=2 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 5.367e-49
Identity = 67/98 (68.37%), Postives = 76/98 (77.55%), Query Frame = 3

Query:  282 PNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSS-IYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKV 572
            PN   R  YAQ+ QI  IRRKMREIMV  A +CDLK LV  FI EVIG+EI++  S  IYPLQ+ FIRKVKILKAPKFDL KLMEVHGDY+E+VG K+
Sbjct:  146 PNHT-RNFYAQSSQIA-IRRKMREIMVKEAQTCDLKELVAKFIPEVIGKEIDEWRSQGIYPLQSTFIRKVKILKAPKFDLMKLMEVHGDYNEEVGAKI 241

HSP 2 Score: 92.8189 bits (229), Expect = 5.367e-49
Identity = 43/61 (70.49%), Postives = 50/61 (81.97%), Query Frame = 2

Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            KI L AE V GK VLT FWGM+FTTDKL SLVR W +LI+A+VDVKTTDN+ +R+FCI FT
Sbjct:   82 KIKLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIQAHVDVKTTDNYQIRIFCIAFT 142

HSP 3 Score: 21.9422 bits (45), Expect = 5.367e-49
Identity = 11/28 (39.29%), Postives = 17/28 (60.71%), Query Frame = 1

Query:    1 KIASEGLKHXVFESITSVIFSTEEEHAY 84
            KIAS+GL   VFE ++      +E+ A+
Sbjct:   54 KIASDGLNFRVFE-VSLADLQNDEDQAF 80

[Close]

BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_COPC7 (40S ribosomal protein S1 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.039e-49
Identity = 64/112 (57.14%), Postives = 83/112 (74.11%), Query Frame = 3

Query:  258 ALDSPXRLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPXDXP 593
            A+    R P QVK+T YAQT Q+ ++R+KM EI+   A SCDLK LV+ F+ E IGREIEKA+ SIYPLQNV+IRK KILKAPKFD+ KL+E+HGD +++ G +V +    P
Sbjct:  139 AIGFTKRRPTQVKKTTYAQTAQVRELRKKMFEIITREATSCDLKELVQKFVPEAIGREIEKASRSIYPLQNVYIRKAKILKAPKFDVSKLLELHGDSTDESGTRVTKDFKEP 250

HSP 2 Score: 80.4925 bits (197), Expect = 7.039e-49
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 2

Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            KI L  + + G+  LT F GM+FT+DKL SLVR W TL+EA+VDVKTTD + LRLF IGFT
Sbjct:   83 KIKLRVDEIQGRNCLTNFHGMDFTSDKLRSLVRKWQTLVEAHVDVKTTDGYLLRLFAIGFT 143

[Close]

BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_LACBS (40S ribosomal protein S1 OS=Laccaria bicolor (strain S238N-H82) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 2.648e-48
Identity = 60/112 (53.57%), Postives = 83/112 (74.11%), Query Frame = 3

Query:  258 ALDSPXRLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPXDXP 593
            A+    R P+QV++T YAQ+ Q+ +IR+KM EIM   A +CDLK LV+ F+ E IGREIEKA  SIYPLQNV++RK KILK+PKFD+ KL+E+HGD +++ G ++ +    P
Sbjct:  139 AIGFTKRRPSQVRKTTYAQSSQVREIRKKMFEIMTREATNCDLKELVQKFVPEAIGREIEKAARSIYPLQNVYVRKAKILKSPKFDMSKLLELHGDSTDETGTRIAKDFKEP 250

HSP 2 Score: 81.2629 bits (199), Expect = 2.648e-48
Identity = 39/61 (63.93%), Postives = 46/61 (75.41%), Query Frame = 2

Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            KI L  + + GK  LT F GM+FT+DKL SLVR W TL+EA+VDVKTTD + LRLF IGFT
Sbjct:   83 KIKLRIDEIQGKNCLTNFHGMDFTSDKLRSLVRKWQTLVEAHVDVKTTDGYLLRLFAIGFT 143

[Close]

BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_POSPM (40S ribosomal protein S1 OS=Postia placenta (strain ATCC 44394 / Madison 698-R) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.498e-48
Identity = 64/112 (57.14%), Postives = 81/112 (72.32%), Query Frame = 3

Query:  258 ALDSPXRLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPXDXP 593
            A+    R P QV++T YAQ+ QI QIR+KM EIM   A+SCDLK LV+ FI E IGREIEKA   IYPLQNVF+ K KILKAPKFD+ KL+E+HG+ +++ G +V +    P
Sbjct:  139 AIGFTKRRPTQVRKTTYAQSSQIRQIRQKMFEIMTREASSCDLKELVQKFIPEAIGREIEKAARGIYPLQNVFVHKAKILKAPKFDMSKLLELHGESTDETGTRVVKDFKEP 250

HSP 2 Score: 80.4925 bits (197), Expect = 4.498e-48
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 2

Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            KI L  + V GK  LT F GM+F++DKL SLVR W TLIEA+VDVKTTD + LRLF IGFT
Sbjct:   83 KIKLRIDEVQGKNCLTNFHGMSFSSDKLRSLVRKWQTLIEAHVDVKTTDGYLLRLFAIGFT 143

[Close]

BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_PYRTR (40S ribosomal protein S1 OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP) GN=rps1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.595e-45
Identity = 65/102 (63.73%), Postives = 77/102 (75.49%), Query Frame = 3

Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDR 578
            R PNQVK+T YAQ+ QI  IR+KM EIM   A+SC L  L +  I EVIGREIEKAT  IYPLQNV +RKVK+LKAPKFDLG L+ +HG+ S +D G KV+R
Sbjct:  144 RRPNQVKKTTYAQSSQIRAIRKKMVEIMARDASSCTLAQLTQKLIPEVIGREIEKATQGIYPLQNVHVRKVKLLKAPKFDLGALLGLHGESSQDDSGQKVER 245

HSP 2 Score: 77.411 bits (189), Expect = 2.595e-45
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 2

Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + V GK  LT F G++FT+DKL SLVR W TLIEA V VKTTD++ LRLFCI FT
Sbjct:   82 KVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVVVKTTDDYLLRLFCIAFT 142

[Close]

BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_ASPCL (40S ribosomal protein S1 OS=Aspergillus clavatus GN=rps1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.777e-44
Identity = 64/102 (62.75%), Postives = 76/102 (74.51%), Query Frame = 3

Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDR 578
            R PNQ+K+T YA++ QI  IR+KM EIM   AASC L  L    I EVIGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G KV+R
Sbjct:  145 RRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGQKVER 246

HSP 2 Score: 74.3294 bits (181), Expect = 4.777e-44
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2

Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + + GK  LT F G++FTTDKL SLVR W +LIEA V VKTTD++ LRLF I FT
Sbjct:   83 KVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFT 143

The following BLAST results are available for this feature:

BLAST of CF417578 vs. ExPASy Swiss-Prot

BLAST of CF417578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158


Match Name	E-value	Identity	Description
RS3A2_VITVI	4.935e-58	83.13	40S ribosomal protein S3a-2 OS=Vitis vinifera GN=G...	[more]
RS3A_CHLRE	4.660e-55	69.39	40S ribosomal protein S3a OS=Chlamydomonas reinhar...	[more]
RS3A_OSTLU	7.951e-51	64.55	40S ribosomal protein S3a OS=Ostreococcus lucimari...	[more]
RS3A_LENED	4.143e-49	55.36	40S ribosomal protein S1 OS=Lentinula edodes GN=RP...	[more]
RS3A_TORRU	5.367e-49	68.37	40S ribosomal protein S3a OS=Tortula ruralis GN=RP...	[more]
RS3A_COPC7	7.039e-49	57.14	40S ribosomal protein S1 OS=Coprinopsis cinerea (s...	[more]
RS3A_LACBS	2.648e-48	53.57	40S ribosomal protein S1 OS=Laccaria bicolor (stra...	[more]
RS3A_POSPM	4.498e-48	57.14	40S ribosomal protein S1 OS=Postia placenta (strai...	[more]
RS3A_PYRTR	2.595e-45	63.73	40S ribosomal protein S1 OS=Pyrenophora tritici-re...	[more]
RS3A_ASPCL	4.777e-44	62.75	40S ribosomal protein S1 OS=Aspergillus clavatus G...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-508 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_G10 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417578 ID=CF417578; Name=CF417578; organism=Citrus sinensis; type=EST; length=652bp
AAGATTGCATCAGAAGGTCTCAAGCACNNAGTGTTTGAGAGTATCACTAG
CGTGATCTTCTCAACTGAAGAAGAGCATGCTTACAGTGAAGATCNCACTG
ACAGCTGAANATGTCCNAGGGAAGANTGTTTTGACTANCTTCTGGGGCAT
GAATTTCACTACAGACAAGCTGANGTCTTTGGTTAGGAANTGGCATACCT
TGATTGAAGCTTACGTGGATGTCAAGACCACTGATAACTTCACATTGAGG
TTGTTCTGCATTGGATTCACCAANGAGACTTCCAAACCAGGTTAAGAGGA
CTTGCTACGCACAGACCANCCAGATTACACAGATTCGCCGCAAGATGAGG
GAGATCATGGTTGCTCANGCAGCATCTTGTGATCTTAAGAGCTTGGTCGA
ANAGTTCATTGCTGAAGTGATTGGAAGAGAGATTGAGAAGGCAACGTCAA
GCATATACCCCTTACAAAATGTGTTCATTCGCAAAGTGAAGATCCTGAAA
GCTCCCAAGTTTGATCTTGGAAAATTGATGGAGGTTCACGGNGATTACTC
GGAAGATGTTGGTGTGAAGGTGGATAGGCCANCTGATGANCCCATGCCTG
AAGCANCAACTGAAGTGATTGGAGCTTGAACGTGAATGAAGAAATTTTTC
TA