CF417578

Overview
NameCF417578
Unique NameCF417578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_KLULA (40S ribosomal protein S1 OS=Kluyveromyces lactis GN=RPS1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.758e-37
Identity = 53/97 (54.64%), Postives = 65/97 (67.01%), Query Frame = 3
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKV 572
            NQVKRT YAQ+  I QIR+ + EI+     +  L  L    I EVI +EIE AT  I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G KV
Sbjct:  148 NQVKRTSYAQSSHIRQIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLLKQPKFDLGSLLSLHGEASAEEKGKKV 244          

HSP 2 Score: 75.485 bits (184), Expect = 3.758e-37
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + V GK +LT F GM+FTTDKL S+VR W TLIEA V VKT+D++ LR+F I FT
Sbjct:   83 KVKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFT 143          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A1_PICST (40S ribosomal protein S1-A OS=Pichia stipitis GN=RPS1A PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.377e-37
Identity = 56/107 (52.34%), Postives = 74/107 (69.16%), Query Frame = 3
Query:  258 ALDSPXRLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKVD 575
            AL    R  NQVK+T YAQ+ ++ ++R+KM EIM    ++  L  L    I EVIGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+   E+ G KV+
Sbjct:  139 ALAFTKRQANQVKKTTYAQSSKLREVRKKMSEIMQREVSAVTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKVLKQPKFDLGALLALHGESGGEEKGRKVN 245          

HSP 2 Score: 68.1662 bits (165), Expect = 6.377e-37
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 2
Query:   92 IXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            + L  + V GK +LT F G++FT+DKL SLVR W +L+EA V VKT D++ LR+F + FT
Sbjct:   84 VKLRVDEVQGKNLLTNFHGLSFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFALAFT 143          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_ZYGRC (40S ribosomal protein S1 OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / IFO 1130 / NBRC 1623 / NCYC 568) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.378e-37
Identity = 50/97 (51.55%), Postives = 64/97 (65.98%), Query Frame = 3
Query:  282 PNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKV 572
            PNQVK+TCYAQ+  I  IR+   EI+     +  L       I EVI +E+E AT  I+PLQNV +RKVK+LK PKFDLG LM +HG+ S++ G KV
Sbjct:  147 PNQVKKTCYAQSSHIRAIRKVFSEILTREVQNSTLAQFTSKLIPEVINKEMENATKDIFPLQNVHVRKVKLLKQPKFDLGSLMALHGEGSDETGKKV 243          

HSP 2 Score: 70.4774 bits (171), Expect = 6.378e-37
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            KI L  + V GK +LT   GM+FTTDK  S+VR W TLIEA V VKT+D + +R+F I FT
Sbjct:   83 KIKLRVDEVQGKNLLTNIHGMDFTTDKYRSMVRKWQTLIEAQVTVKTSDEYVIRVFAIAFT 143          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_BOMMA (40S ribosomal protein S3a OS=Bombyx mandarina PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.623e-37
Identity = 45/105 (42.86%), Postives = 67/105 (63.81%), Query Frame = 3
Query:  294 KRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKVDRPXDXPMP 599
            ++TCYAQ  Q+  IR+KM EI+     + +L+ +V   I + I ++IEKA   IYPL++V IRKVK+LK P+F++ KLME+HG+      + G K +RP     P
Sbjct:  154 RKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEGGGGKREAGDKSERPEGYEPP 258          

HSP 2 Score: 78.5666 bits (192), Expect = 6.623e-37
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETS 283
            K  L AE V G+ VL  F GM+ TTDKL  +V+ W TLIEA +DVKTTD + LR+FCIGFT + S
Sbjct:   86 KFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDS 150          

HSP 3 Score: 25.409 bits (54), Expect = 6.623e-37
Identity = 14/29 (48.28%), Postives = 19/29 (65.52%), Query Frame = 1
Query:    1 KIASEGLKHXVFE-SITSVIFSTEEEHAY 84
            KIASEGLK  VFE S+  +   T+ E ++
Sbjct:   56 KIASEGLKGRVFEVSLADLQADTDAERSF 84          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_ANODA (40S ribosomal protein S3a OS=Anopheles darlingi PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.118e-36
Identity = 49/111 (44.14%), Postives = 66/111 (59.46%), Query Frame = 3
Query:  294 KRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDV---------GVKVDRPXDXPMP 599
            ++TCYAQ  QI  IR++M  I+     + DLK +VE  + + I ++IEKA   +YPL +VFIRKVK+LK P+FDL  L+E+HGD              GV VDRP     P
Sbjct:  154 RKTCYAQHSQIKNIRQRMTTIIKREIINSDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVFIRKVKVLKKPRFDLSSLLELHGDGGGKAAEVSTGAASGVVVDRPEGYEPP 264          

HSP 2 Score: 79.7221 bits (195), Expect = 1.118e-36
Identity = 39/65 (60.00%), Postives = 46/65 (70.77%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETS 283
            K  L AE V G+ VL  F GM+ TTDKL S+V+ W TLIE  VDVKTTD + LR+FCIGFT + S
Sbjct:   86 KFKLIAESVNGRDVLCNFHGMDLTTDKLRSMVKKWQTLIECSVDVKTTDGYLLRVFCIGFTIKDS 150          

HSP 3 Score: 21.1718 bits (43), Expect = 1.118e-36
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 1
Query:    1 KIASEGLKHXVFE 39
            +IAS+GLK  VFE
Sbjct:   56 RIASDGLKGRVFE 68          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_BOMMO (40S ribosomal protein S3a OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.119e-36
Identity = 45/105 (42.86%), Postives = 67/105 (63.81%), Query Frame = 3
Query:  294 KRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKVDRPXDXPMP 599
            ++TCYAQ  Q+  IR+KM EI+     + +L+ +V   I + I ++IEKA   IYPL++V IRKVK+LK P+F++ KLME+HG+      + G K +RP     P
Sbjct:  154 RKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEGGGGKGEAGDKSERPEGYEPP 258          

HSP 2 Score: 78.5666 bits (192), Expect = 1.119e-36
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETS 283
            K  L AE V G+ VL  F GM+ TTDKL  +V+ W TLIEA +DVKTTD + LR+FCIGFT + S
Sbjct:   86 KFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDS 150          

HSP 3 Score: 25.409 bits (54), Expect = 1.119e-36
Identity = 14/29 (48.28%), Postives = 19/29 (65.52%), Query Frame = 1
Query:    1 KIASEGLKHXVFE-SITSVIFSTEEEHAY 84
            KIASEGLK  VFE S+  +   T+ E ++
Sbjct:   56 KIASEGLKGRVFEVSLADLQADTDAERSF 84          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_SPOFR (40S ribosomal protein S3a OS=Spodoptera frugiperda PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.454e-36
Identity = 45/106 (42.45%), Postives = 67/106 (63.21%), Query Frame = 3
Query:  294 KRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE----DVGVKVDRPXDXPMP 599
            ++TCYAQ  Q+  IR+KM EI+     + +L+ +V   I + I ++IEKA   IYPL++V IRKVK+LK P+F++ KLME+HG+       + G K +RP     P
Sbjct:  154 RKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEGGSGKRGEAGDKSERPEGYEPP 259          

HSP 2 Score: 77.7962 bits (190), Expect = 1.454e-36
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETS 283
            K  L AE V G+ VL  F GM+ TTDKL  +V+ W TL+EA +DVKTTD + LR+FCIGFT + S
Sbjct:   86 KFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLVEANIDVKTTDGYLLRVFCIGFTNKDS 150          

HSP 3 Score: 25.409 bits (54), Expect = 1.454e-36
Identity = 14/29 (48.28%), Postives = 19/29 (65.52%), Query Frame = 1
Query:    1 KIASEGLKHXVFE-SITSVIFSTEEEHAY 84
            KIASEGLK  VFE S+  +   T+ E ++
Sbjct:   56 KIASEGLKGRVFEVSLADLQADTDAERSF 84          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_VANPO (40S ribosomal protein S1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.837e-36
Identity = 53/97 (54.64%), Postives = 63/97 (64.95%), Query Frame = 3
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKV 572
            NQVKRT YAQ+  I  IR+ + EI+        L  L    I EVI +EIE AT  I+PLQNV IRKVK+LK PKFDLG LM +HG+ S E+ G KV
Sbjct:  148 NQVKRTSYAQSSHIRAIRKVISEILTREVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLLKQPKFDLGSLMALHGEGSGEEKGKKV 244          

HSP 2 Score: 75.485 bits (184), Expect = 1.837e-36
Identity = 37/65 (56.92%), Postives = 47/65 (72.31%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETS 283
            KI L  + V GK +LT F GM+FTTDK+ S+VR W TLIEA V VKT+D++ LR+F I FT + S
Sbjct:   83 KIKLRVDEVQGKNLLTNFHGMDFTTDKVRSMVRKWQTLIEANVTVKTSDDYVLRVFAIAFTRKQS 147          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_THEPA (40S ribosomal protein S3a OS=Theileria parva GN=TP03_0697 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.890e-36
Identity = 51/94 (54.26%), Postives = 66/94 (70.21%), Query Frame = 3
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED 557
            R P Q+K TCY +T ++  I +KM  +M   A++  LK LV+  I E IG+EIEKA  SI+PLQNV +RK+K+LK PKFDL KLME H +YS D
Sbjct:  145 RRPGQLKSTCYVRTSKVRLIHKKMVSVMTNEASNSTLKELVKKVIPESIGKEIEKACKSIFPLQNVLVRKIKVLKKPKFDLTKLMESH-NYSGD 237          

HSP 2 Score: 69.707 bits (169), Expect = 1.890e-36
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETSKPG 292
            KI L+ E V G+  LT F G + T DKL SL+R  ++LIEA+ DVKT D + LRLFC+G+T    +PG
Sbjct:   83 KIKLSCEDVQGRNCLTDFHGTSVTRDKLCSLIRKNYSLIEAFADVKTLDGYNLRLFCVGYTKR--RPG 148          

HSP 3 Score: 22.7126 bits (47), Expect = 1.890e-36
Identity = 11/28 (39.29%), Postives = 19/28 (67.86%), Query Frame = 1
Query:    1 KIASEGLKHXVFESITSVIFSTEEEHAY 84
            K+A++GLK  VFE ++    + +E+ AY
Sbjct:   55 KLATDGLKGRVFE-MSLADLNADEDQAY 81          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_ASHGO (40S ribosomal protein S1 OS=Ashbya gossypii GN=RPS1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.059e-36
Identity = 52/100 (52.00%), Postives = 65/100 (65.00%), Query Frame = 3
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKV 572
            R  NQ+K+T YAQ+  I  IR+ + EI+     +  L  L    I EVI +EIE AT  I+PLQNV IRKVK+LK PKFDLG LM +HG+ S E+ G KV
Sbjct:  145 RQSNQIKKTSYAQSSHIRAIRKVISEILTREVQNATLAQLTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLLKQPKFDLGALMTLHGESSGEEKGKKV 244          

HSP 2 Score: 74.3294 bits (181), Expect = 4.059e-36
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETS 283
            K+ L  + V GK +LT F G++FTTDKL S+VR W TLIEA V VKT D++ LR+F I FT   S
Sbjct:   83 KVKLRVDEVQGKNLLTNFHGLDFTTDKLRSMVRKWQTLIEANVTVKTADDYVLRVFAIAFTRRQS 147          
The following BLAST results are available for this feature:
BLAST of CF417578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
RS3A_KLULA3.758e-3754.6440S ribosomal protein S1 OS=Kluyveromyces lactis G... [more]
RS3A1_PICST6.377e-3752.3440S ribosomal protein S1-A OS=Pichia stipitis GN=R... [more]
RS3A_ZYGRC6.378e-3751.5540S ribosomal protein S1 OS=Zygosaccharomyces roux... [more]
RS3A_BOMMA6.623e-3742.8640S ribosomal protein S3a OS=Bombyx mandarina PE=2... [more]
RS3A_ANODA1.118e-3644.1440S ribosomal protein S3a OS=Anopheles darlingi PE... [more]
RS3A_BOMMO1.119e-3642.8640S ribosomal protein S3a OS=Bombyx mori PE=2 SV=1[more]
RS3A_SPOFR1.454e-3642.4540S ribosomal protein S3a OS=Spodoptera frugiperda... [more]
RS3A_VANPO1.837e-3654.6440S ribosomal protein S1 OS=Vanderwaltozyma polysp... [more]
RS3A_THEPA1.890e-3654.2640S ribosomal protein S3a OS=Theileria parva GN=TP... [more]
RS3A_ASHGO4.059e-3652.0040S ribosomal protein S1 OS=Ashbya gossypii GN=RPS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-508 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417578 ID=CF417578; Name=CF417578; organism=Citrus sinensis; type=EST; length=652bp
AAGATTGCATCAGAAGGTCTCAAGCACNNAGTGTTTGAGAGTATCACTAG
CGTGATCTTCTCAACTGAAGAAGAGCATGCTTACAGTGAAGATCNCACTG
ACAGCTGAANATGTCCNAGGGAAGANTGTTTTGACTANCTTCTGGGGCAT
GAATTTCACTACAGACAAGCTGANGTCTTTGGTTAGGAANTGGCATACCT
TGATTGAAGCTTACGTGGATGTCAAGACCACTGATAACTTCACATTGAGG
TTGTTCTGCATTGGATTCACCAANGAGACTTCCAAACCAGGTTAAGAGGA
CTTGCTACGCACAGACCANCCAGATTACACAGATTCGCCGCAAGATGAGG
GAGATCATGGTTGCTCANGCAGCATCTTGTGATCTTAAGAGCTTGGTCGA
ANAGTTCATTGCTGAAGTGATTGGAAGAGAGATTGAGAAGGCAACGTCAA
GCATATACCCCTTACAAAATGTGTTCATTCGCAAAGTGAAGATCCTGAAA
GCTCCCAAGTTTGATCTTGGAAAATTGATGGAGGTTCACGGNGATTACTC
GGAAGATGTTGGTGTGAAGGTGGATAGGCCANCTGATGANCCCATGCCTG
AAGCANCAACTGAAGTGATTGGAGCTTGAACGTGAATGAAGAAATTTTTC
TA
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