CF417578
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_DROSE (40S ribosomal protein S3a OS=Drosophila sechellia GN=RpS3A PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.771e-33 Identity = 47/114 (41.23%), Postives = 69/114 (60.53%), Query Frame = 3 Query: 294 KRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD--------YSEDVGVKVDRP--XDXPMPEA 605 ++TCYAQ Q+ +IR +M +I+ + DLK LV + I ++IEK+ IYPL +V+IRKVK+LK P+FD+ KL+E+HGD G +DRP + P+ EA Sbjct: 154 RKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYEPPVQEA 267 HSP 2 Score: 70.4774 bits (171), Expect = 1.771e-33 Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K L AE V + VL F GM+ TTDK S+V+ W TLIEA V+ KT D + LR+FCIGFT Sbjct: 86 KFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTIDGYLLRVFCIGFT 146
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_DROAN (40S ribosomal protein S3a OS=Drosophila ananassae GN=RpS3A PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 2.307e-33 Identity = 49/114 (42.98%), Postives = 71/114 (62.28%), Query Frame = 3 Query: 294 KRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDV-----GVKVDRP--XDXPMPEA 605 ++TCYAQ Q+ +IR +M +I+ + DLK LV + I ++IEK+ IYPL +V+IRKVK+LK P+FD+ KL+E+HGD S D G +DRP + P+ EA Sbjct: 154 RKTCYAQQSQVRKIRARMTDIINNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSSDAVVSTEGAVIDRPEGYEPPVQEA 267 HSP 2 Score: 70.4774 bits (171), Expect = 2.307e-33 Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K L AE V + VL F GM+ TTDK S+V+ W TLIEA V+ KT D + LR+FCIGFT Sbjct: 86 KFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTIDGYLLRVFCIGFT 146
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_DROME (40S ribosomal protein S3a OS=Drosophila melanogaster GN=RpS3A PE=1 SV=3) HSP 1 Score: 91.2781 bits (225), Expect = 2.307e-33 Identity = 45/110 (40.91%), Postives = 65/110 (59.09%), Query Frame = 3 Query: 294 KRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD--------YSEDVGVKVDRPXDXPMP 599 ++TCYAQ Q+ +IR +M +I+ + DLK LV + I ++IEK+ IYPL +V+IRKVK+LK P+FD+ KL+E+HGD G +DRP P Sbjct: 154 RKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYEPP 263 HSP 2 Score: 70.8626 bits (172), Expect = 2.307e-33 Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K L AE V + VL F GM+ TTDK S+V+ W TLIEA V+ KT D + LR+FCIGFT Sbjct: 86 KFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFT 146
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_DROGR (40S ribosomal protein S3a OS=Drosophila grimshawi GN=RpS3A PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 5.097e-33 Identity = 48/114 (42.11%), Postives = 71/114 (62.28%), Query Frame = 3 Query: 294 KRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD----YSEDV----GVKVDRP--XDXPMPEA 605 ++TCYAQ Q+ +IR +M +I+ + DLK LV + I ++IEK+ IYPL +V+IRKVK+LK P+FD+ KL+E+H D +E V G +DRP + P+ EA Sbjct: 154 RKTCYAQQSQVRKIRARMTDIITNEVSGVDLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHNDGGGKTTEAVVSAEGAVIDRPEGYEPPVQEA 267 HSP 2 Score: 71.633 bits (174), Expect = 5.097e-33 Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K L AE V + VL F GM+ TTDK S+V+ W TLIEA V+ KT+D + LR+FCIGFT Sbjct: 86 KFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTSDGYLLRIFCIGFT 146
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_PODAN (40S ribosomal protein S1 OS=Podospora anserina GN=RPS1 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.307e-30 Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 3 Query: 276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNV 473 R PNQ+K+T YA + QI IR+KM EI+ A+SC L+ L I EVIGREIEKAT IYPLQNV Sbjct: 145 RRPNQIKKTTYAASSQIRAIRKKMTEIIQREASSCTLQQLTSKLIPEVIGREIEKATQGIYPLQNV 210 HSP 2 Score: 73.1738 bits (178), Expect = 1.307e-30 Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K+ L + V GK LT F G++FT+DKL SLVR W TLIEA V V+TTD++ LRLF I FT Sbjct: 83 KVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVQTTDHYLLRLFAIAFT 143
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_TAESO (40S ribosomal protein S3a OS=Taenia solium PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.887e-30 Identity = 42/103 (40.78%), Postives = 64/103 (62.14%), Query Frame = 3 Query: 294 KRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDRPXDXPMP 599 K YAQT +I ++R K+ E++ A CDLKS+V+ I + IG++ SSI+PL +RKVK+LK PK DLG+++E+H + +++ G V RP P Sbjct: 150 KSHAYAQTTRIKKLRAKIVEVVQREVARCDLKSVVQKLIPDSIGQDAMNEASSIFPLSGALVRKVKVLKKPKLDLGRILELHSEGKADEFGEGVPRPDHYEPP 252 HSP 2 Score: 67.3958 bits (163), Expect = 2.887e-30 Identity = 33/61 (54.10%), Postives = 39/61 (63.93%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K L E V G+ LT F GM+ T DKL +V W + IEA+VDVKTTD +TLR F I FT Sbjct: 83 KFKLQVEDVQGRHCLTNFHGMDLTRDKLCGMVLKWQSTIEAHVDVKTTDGYTLRFFVIAFT 143
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_DICDI (40S ribosomal protein S3a OS=Dictyostelium discoideum GN=rps3a PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 7.373e-30 Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 2 Query: 71 KSMLTVKIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 +S + KI L AE V G+ VLT F+GM+ T+DKL SL+ W TLIE +VDVKTTD + LR+F I FT Sbjct: 76 ESQVFRKIKLRAEEVEGRNVLTNFYGMDLTSDKLRSLIHKWSTLIECFVDVKTTDGYFLRVFAICFT 142 HSP 2 Score: 73.559 bits (179), Expect = 7.373e-30 Identity = 44/119 (36.97%), Postives = 66/119 (55.46%), Query Frame = 3 Query: 285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFI--------------AEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-------SEDVGVKVDR 578 +Q K+T YA+T ++ IR+KM +I+ +S DLK++V+ I A + +I SSI+P+ NVFIRKVK+LK PK D KL E++ +E+VG V+R Sbjct: 147 SQKKKTSYAKTSRVKAIRKKMVDILTETVSSNDLKTVVDYLIGVSLNGVTTNASGFAPTLAEKIRIEGSSIFPIHNVFIRKVKVLKTPKVDAAKLSELYASSATSTIAPTEEVGTAVER 265 HSP 3 Score: 20.4014 bits (41), Expect = 7.373e-30 Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1 Query: 1 KIASEGLKHXVFE 39 K+AS+GLK V+E Sbjct: 54 KLASDGLKGRVYE 66
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_SCHJA (40S ribosomal protein S3a OS=Schistosoma japonicum GN=SJCHGC01275 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.831e-29 Identity = 47/109 (43.12%), Postives = 65/109 (59.63%), Query Frame = 3 Query: 279 LPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDRPXDXPMPE 602 +P + YAQT +I +IR ++ EI+ ++CDLK +V I + I ++ KA S IYPL FIRKVK+LK PK DL +LME+HG+ S G V RP P+ Sbjct: 147 VPRSERLHSYAQTTRIKRIRARLVEIIQQEVSTCDLKEVVNKLIPDSIAQDARKAASWIYPLGETFIRKVKVLKRPKADLARLMELHGESKSTAPGETVSRPDHYEPPK 255 HSP 2 Score: 63.1586 bits (152), Expect = 1.831e-29 Identity = 32/61 (52.46%), Postives = 38/61 (62.30%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K L E V G+ LT F G+ T DKL S+V W + IEA+VDVKTTD + LR F I FT Sbjct: 84 KFKLQIEDVQGRHCLTNFHGLELTRDKLCSVVVKWRSTIEAHVDVKTTDGYLLRFFIITFT 144
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_TETTH (40S ribosomal protein S3a OS=Tetrahymena thermophila GN=TTHERM_00047480 PE=3 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 5.004e-26 Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 3 Query: 300 TCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVH 539 TCYA++ Q+ IRRK+ + AA + + I E ++IEK T +I+PLQN+ IRKVK+LK PK D K+ E++ Sbjct: 159 TCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKETKNIFPLQNITIRKVKVLKRPKLDATKIAELY 238 HSP 2 Score: 66.6254 bits (161), Expect = 5.004e-26 Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETS 283 K+ L + V G+ T F+G++ T D+L S++R W TLIEA VD KT D + +R+F + FT +TS Sbjct: 86 KVKLVIDEVDGRNAKTSFYGLDITRDRLCSMIRKWQTLIEARVDCKTNDGYIIRVFTLAFTKKTS 150
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_LEIMA (40S ribosomal protein S3a OS=Leishmania major GN=LmjF35.0400 PE=2 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 4.419e-20 Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K+ T + V G+ +LT F M TTDK+ SL+R W T +E V+VKT D +T+RLF + FT Sbjct: 86 KVRFTVQEVQGRNLLTQFHSMEVTTDKMASLLRKWCTTMETTVEVKTADGYTMRLFVVAFT 146 HSP 2 Score: 53.1434 bits (126), Expect = 4.419e-20 Identity = 24/86 (27.91%), Postives = 45/86 (52.33%), Query Frame = 3 Query: 285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHG 542 NQ R CYA+ + +R ++ +++ + +K V V+ + + + I PL+ + IRKV++++ PKFD L+ HG Sbjct: 151 NQQSRNCYAKQRLVKWLRMRITKMIKRRLSKVQIKEAVSLLTRNVLSDALVRRCNPILPLRELRIRKVRVVRTPKFDAQALLSAHG 236 The following BLAST results are available for this feature:
BLAST of CF417578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 158
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417578 ID=CF417578; Name=CF417578; organism=Citrus sinensis; type=EST; length=652bpback to top |