CF417578

Overview
NameCF417578
Unique NameCF417578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_DROSE (40S ribosomal protein S3a OS=Drosophila sechellia GN=RpS3A PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.771e-33
Identity = 47/114 (41.23%), Postives = 69/114 (60.53%), Query Frame = 3
Query:  294 KRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD--------YSEDVGVKVDRP--XDXPMPEA 605
            ++TCYAQ  Q+ +IR +M +I+    +  DLK LV     + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD             G  +DRP   + P+ EA
Sbjct:  154 RKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYEPPVQEA 267          

HSP 2 Score: 70.4774 bits (171), Expect = 1.771e-33
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L AE V  + VL  F GM+ TTDK  S+V+ W TLIEA V+ KT D + LR+FCIGFT
Sbjct:   86 KFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTIDGYLLRVFCIGFT 146          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_DROAN (40S ribosomal protein S3a OS=Drosophila ananassae GN=RpS3A PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.307e-33
Identity = 49/114 (42.98%), Postives = 71/114 (62.28%), Query Frame = 3
Query:  294 KRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDV-----GVKVDRP--XDXPMPEA 605
            ++TCYAQ  Q+ +IR +M +I+    +  DLK LV     + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD    S D      G  +DRP   + P+ EA
Sbjct:  154 RKTCYAQQSQVRKIRARMTDIINNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSSDAVVSTEGAVIDRPEGYEPPVQEA 267          

HSP 2 Score: 70.4774 bits (171), Expect = 2.307e-33
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L AE V  + VL  F GM+ TTDK  S+V+ W TLIEA V+ KT D + LR+FCIGFT
Sbjct:   86 KFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTIDGYLLRVFCIGFT 146          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_DROME (40S ribosomal protein S3a OS=Drosophila melanogaster GN=RpS3A PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 2.307e-33
Identity = 45/110 (40.91%), Postives = 65/110 (59.09%), Query Frame = 3
Query:  294 KRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD--------YSEDVGVKVDRPXDXPMP 599
            ++TCYAQ  Q+ +IR +M +I+    +  DLK LV     + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+HGD             G  +DRP     P
Sbjct:  154 RKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYEPP 263          

HSP 2 Score: 70.8626 bits (172), Expect = 2.307e-33
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L AE V  + VL  F GM+ TTDK  S+V+ W TLIEA V+ KT D + LR+FCIGFT
Sbjct:   86 KFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFT 146          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_DROGR (40S ribosomal protein S3a OS=Drosophila grimshawi GN=RpS3A PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 5.097e-33
Identity = 48/114 (42.11%), Postives = 71/114 (62.28%), Query Frame = 3
Query:  294 KRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD----YSEDV----GVKVDRP--XDXPMPEA 605
            ++TCYAQ  Q+ +IR +M +I+    +  DLK LV     + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+H D     +E V    G  +DRP   + P+ EA
Sbjct:  154 RKTCYAQQSQVRKIRARMTDIITNEVSGVDLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHNDGGGKTTEAVVSAEGAVIDRPEGYEPPVQEA 267          

HSP 2 Score: 71.633 bits (174), Expect = 5.097e-33
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L AE V  + VL  F GM+ TTDK  S+V+ W TLIEA V+ KT+D + LR+FCIGFT
Sbjct:   86 KFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTSDGYLLRIFCIGFT 146          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_PODAN (40S ribosomal protein S1 OS=Podospora anserina GN=RPS1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.307e-30
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 3
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNV 473
            R PNQ+K+T YA + QI  IR+KM EI+   A+SC L+ L    I EVIGREIEKAT  IYPLQNV
Sbjct:  145 RRPNQIKKTTYAASSQIRAIRKKMTEIIQREASSCTLQQLTSKLIPEVIGREIEKATQGIYPLQNV 210          

HSP 2 Score: 73.1738 bits (178), Expect = 1.307e-30
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + V GK  LT F G++FT+DKL SLVR W TLIEA V V+TTD++ LRLF I FT
Sbjct:   83 KVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVQTTDHYLLRLFAIAFT 143          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_TAESO (40S ribosomal protein S3a OS=Taenia solium PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.887e-30
Identity = 42/103 (40.78%), Postives = 64/103 (62.14%), Query Frame = 3
Query:  294 KRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDRPXDXPMP 599
            K   YAQT +I ++R K+ E++    A CDLKS+V+  I + IG++     SSI+PL    +RKVK+LK PK DLG+++E+H +  +++ G  V RP     P
Sbjct:  150 KSHAYAQTTRIKKLRAKIVEVVQREVARCDLKSVVQKLIPDSIGQDAMNEASSIFPLSGALVRKVKVLKKPKLDLGRILELHSEGKADEFGEGVPRPDHYEPP 252          

HSP 2 Score: 67.3958 bits (163), Expect = 2.887e-30
Identity = 33/61 (54.10%), Postives = 39/61 (63.93%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L  E V G+  LT F GM+ T DKL  +V  W + IEA+VDVKTTD +TLR F I FT
Sbjct:   83 KFKLQVEDVQGRHCLTNFHGMDLTRDKLCGMVLKWQSTIEAHVDVKTTDGYTLRFFVIAFT 143          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_DICDI (40S ribosomal protein S3a OS=Dictyostelium discoideum GN=rps3a PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.373e-30
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 2
Query:   71 KSMLTVKIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            +S +  KI L AE V G+ VLT F+GM+ T+DKL SL+  W TLIE +VDVKTTD + LR+F I FT
Sbjct:   76 ESQVFRKIKLRAEEVEGRNVLTNFYGMDLTSDKLRSLIHKWSTLIECFVDVKTTDGYFLRVFAICFT 142          

HSP 2 Score: 73.559 bits (179), Expect = 7.373e-30
Identity = 44/119 (36.97%), Postives = 66/119 (55.46%), Query Frame = 3
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFI--------------AEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-------SEDVGVKVDR 578
            +Q K+T YA+T ++  IR+KM +I+    +S DLK++V+  I              A  +  +I    SSI+P+ NVFIRKVK+LK PK D  KL E++          +E+VG  V+R
Sbjct:  147 SQKKKTSYAKTSRVKAIRKKMVDILTETVSSNDLKTVVDYLIGVSLNGVTTNASGFAPTLAEKIRIEGSSIFPIHNVFIRKVKVLKTPKVDAAKLSELYASSATSTIAPTEEVGTAVER 265          

HSP 3 Score: 20.4014 bits (41), Expect = 7.373e-30
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1
Query:    1 KIASEGLKHXVFE 39
            K+AS+GLK  V+E
Sbjct:   54 KLASDGLKGRVYE 66          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_SCHJA (40S ribosomal protein S3a OS=Schistosoma japonicum GN=SJCHGC01275 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.831e-29
Identity = 47/109 (43.12%), Postives = 65/109 (59.63%), Query Frame = 3
Query:  279 LPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDRPXDXPMPE 602
            +P   +   YAQT +I +IR ++ EI+    ++CDLK +V   I + I ++  KA S IYPL   FIRKVK+LK PK DL +LME+HG+  S   G  V RP     P+
Sbjct:  147 VPRSERLHSYAQTTRIKRIRARLVEIIQQEVSTCDLKEVVNKLIPDSIAQDARKAASWIYPLGETFIRKVKVLKRPKADLARLMELHGESKSTAPGETVSRPDHYEPPK 255          

HSP 2 Score: 63.1586 bits (152), Expect = 1.831e-29
Identity = 32/61 (52.46%), Postives = 38/61 (62.30%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L  E V G+  LT F G+  T DKL S+V  W + IEA+VDVKTTD + LR F I FT
Sbjct:   84 KFKLQIEDVQGRHCLTNFHGLELTRDKLCSVVVKWRSTIEAHVDVKTTDGYLLRFFIITFT 144          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_TETTH (40S ribosomal protein S3a OS=Tetrahymena thermophila GN=TTHERM_00047480 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.004e-26
Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 3
Query:  300 TCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVH 539
            TCYA++ Q+  IRRK+   +   AA   +    +  I E   ++IEK T +I+PLQN+ IRKVK+LK PK D  K+ E++
Sbjct:  159 TCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKETKNIFPLQNITIRKVKVLKRPKLDATKIAELY 238          

HSP 2 Score: 66.6254 bits (161), Expect = 5.004e-26
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETS 283
            K+ L  + V G+   T F+G++ T D+L S++R W TLIEA VD KT D + +R+F + FT +TS
Sbjct:   86 KVKLVIDEVDGRNAKTSFYGLDITRDRLCSMIRKWQTLIEARVDCKTNDGYIIRVFTLAFTKKTS 150          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_LEIMA (40S ribosomal protein S3a OS=Leishmania major GN=LmjF35.0400 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 4.419e-20
Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+  T + V G+ +LT F  M  TTDK+ SL+R W T +E  V+VKT D +T+RLF + FT
Sbjct:   86 KVRFTVQEVQGRNLLTQFHSMEVTTDKMASLLRKWCTTMETTVEVKTADGYTMRLFVVAFT 146          

HSP 2 Score: 53.1434 bits (126), Expect = 4.419e-20
Identity = 24/86 (27.91%), Postives = 45/86 (52.33%), Query Frame = 3
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHG 542
            NQ  R CYA+   +  +R ++ +++    +   +K  V      V+   + +  + I PL+ + IRKV++++ PKFD   L+  HG
Sbjct:  151 NQQSRNCYAKQRLVKWLRMRITKMIKRRLSKVQIKEAVSLLTRNVLSDALVRRCNPILPLRELRIRKVRVVRTPKFDAQALLSAHG 236          
The following BLAST results are available for this feature:
BLAST of CF417578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
RS3A_DROSE1.771e-3341.2340S ribosomal protein S3a OS=Drosophila sechellia ... [more]
RS3A_DROAN2.307e-3342.9840S ribosomal protein S3a OS=Drosophila ananassae ... [more]
RS3A_DROME2.307e-3340.9140S ribosomal protein S3a OS=Drosophila melanogast... [more]
RS3A_DROGR5.097e-3342.1140S ribosomal protein S3a OS=Drosophila grimshawi ... [more]
RS3A_PODAN1.307e-3060.6140S ribosomal protein S1 OS=Podospora anserina GN=... [more]
RS3A_TAESO2.887e-3040.7840S ribosomal protein S3a OS=Taenia solium PE=2 SV... [more]
RS3A_DICDI7.373e-3056.7240S ribosomal protein S3a OS=Dictyostelium discoid... [more]
RS3A_SCHJA1.831e-2943.1240S ribosomal protein S3a OS=Schistosoma japonicum... [more]
RS3A_TETTH5.004e-2642.5040S ribosomal protein S3a OS=Tetrahymena thermophi... [more]
RS3A_LEIMA4.419e-2047.5440S ribosomal protein S3a OS=Leishmania major GN=L... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-508 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417578 ID=CF417578; Name=CF417578; organism=Citrus sinensis; type=EST; length=652bp
AAGATTGCATCAGAAGGTCTCAAGCACNNAGTGTTTGAGAGTATCACTAG
CGTGATCTTCTCAACTGAAGAAGAGCATGCTTACAGTGAAGATCNCACTG
ACAGCTGAANATGTCCNAGGGAAGANTGTTTTGACTANCTTCTGGGGCAT
GAATTTCACTACAGACAAGCTGANGTCTTTGGTTAGGAANTGGCATACCT
TGATTGAAGCTTACGTGGATGTCAAGACCACTGATAACTTCACATTGAGG
TTGTTCTGCATTGGATTCACCAANGAGACTTCCAAACCAGGTTAAGAGGA
CTTGCTACGCACAGACCANCCAGATTACACAGATTCGCCGCAAGATGAGG
GAGATCATGGTTGCTCANGCAGCATCTTGTGATCTTAAGAGCTTGGTCGA
ANAGTTCATTGCTGAAGTGATTGGAAGAGAGATTGAGAAGGCAACGTCAA
GCATATACCCCTTACAAAATGTGTTCATTCGCAAAGTGAAGATCCTGAAA
GCTCCCAAGTTTGATCTTGGAAAATTGATGGAGGTTCACGGNGATTACTC
GGAAGATGTTGGTGTGAAGGTGGATAGGCCANCTGATGANCCCATGCCTG
AAGCANCAACTGAAGTGATTGGAGCTTGAACGTGAATGAAGAAATTTTTC
TA
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