CF417578

Overview
NameCF417578
Unique NameCF417578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A2_LEIIN (40S ribosomal protein S3a-2 OS=Leishmania infantum GN=LinJ35.0510 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 4.419e-20
Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+  T + V G+ +LT F  M  TTDK+ SL+R W T +E  V+VKT D +T+RLF + FT
Sbjct:   86 KVRFTVQEVQGRNLLTQFHSMEVTTDKMASLLRKWCTTMETTVEVKTADGYTMRLFVVAFT 146          

HSP 2 Score: 53.1434 bits (126), Expect = 4.419e-20
Identity = 24/86 (27.91%), Postives = 45/86 (52.33%), Query Frame = 3
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHG 542
            NQ  R CYA+   +  +R ++ +++    +   +K  V      V+   + +  + I PL+ + IRKV++++ PKFD   L+  HG
Sbjct:  151 NQQSRNCYAKQRLVKWLRMRITKMIKRRLSKVQIKEAVSLLTRNVLSDALVRRCNPILPLRELRIRKVRVVRTPKFDAQALLSAHG 236          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A1_LEIIN (40S ribosomal protein S3a-1 OS=Leishmania infantum GN=LinJ35.0500 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 4.419e-20
Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+  T + V G+ +LT F  M  TTDK+ SL+R W T +E  V+VKT D +T+RLF + FT
Sbjct:   86 KVRFTVQEVQGRNLLTQFHSMEVTTDKMASLLRKWCTTMETTVEVKTADGYTMRLFVVAFT 146          

HSP 2 Score: 53.1434 bits (126), Expect = 4.419e-20
Identity = 24/86 (27.91%), Postives = 45/86 (52.33%), Query Frame = 3
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHG 542
            NQ  R CYA+   +  +R ++ +++    +   +K  V      V+   + +  + I PL+ + IRKV++++ PKFD   L+  HG
Sbjct:  151 NQQSRNCYAKQRLVKWLRMRITKMIKRRLSKVQIKEAVSLLTRNVLSDALVRRCNPILPLRELRIRKVRVVRTPKFDAQALLSAHG 236          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A2_TRYCR (40S ribosomal protein S3a-2 OS=Trypanosoma cruzi GN=Tc00.1047053511001.9 PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 4.420e-20
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETS 283
            K+    + V G+ +LT F  M  T+D++  L+R W T IEA V+ KT D +TLRLF I FT + S
Sbjct:   85 KVKFVVQEVQGRNLLTQFHSMEMTSDRVYFLLRKWCTTIEAAVEAKTADGYTLRLFVIAFTKKQS 149          

HSP 2 Score: 56.6102 bits (135), Expect = 4.420e-20
Identity = 28/110 (25.45%), Postives = 56/110 (50.91%), Query Frame = 3
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY---SEDVGVKVDRPXDXPMPEA 605
            NQ+ + CYA+T  +  +R ++  ++    +  ++   V      ++   + K  + I PL+++ IRKVK+++ P+FD   L+  HG+    +E     V+   + P  EA
Sbjct:  150 NQLSKNCYAKTRLVKWVRHRITNLIRQRLSKVNINEAVTLLTRNILRDRLAKRCNPIVPLRDLRIRKVKVVRTPRFDAQALLNAHGEIPASAEGEARVVEEAQEAPAAEA 259          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A1_TRYCR (40S ribosomal protein S3a-1 OS=Trypanosoma cruzi GN=Tc00.1047053503635.59 PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 4.420e-20
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETS 283
            K+    + V G+ +LT F  M  T+D++  L+R W T IEA V+ KT D +TLRLF I FT + S
Sbjct:   85 KVKFVVQEVQGRNLLTQFHSMEMTSDRVYFLLRKWCTTIEAAVETKTADGYTLRLFVIAFTKKQS 149          

HSP 2 Score: 56.6102 bits (135), Expect = 4.420e-20
Identity = 28/110 (25.45%), Postives = 56/110 (50.91%), Query Frame = 3
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY---SEDVGVKVDRPXDXPMPEA 605
            NQ+ + CYA+T  +  +R ++  ++    +  ++   V      ++   + K  + I PL+++ IRKVK+++ P+FD   L+  HG+    +E     V+   + P  EA
Sbjct:  150 NQLSKNCYAKTRLVKWVRHRITNLIRQRLSKVNINEAVTLLTRNILRDRLAKRCNPIVPLRDLRIRKVKVVRTPRFDAQALLNAHGEIPASAEGEARVVEEAQEAPAAEA 259          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_LEIBR (40S ribosomal protein S3a OS=Leishmania braziliensis GN=LbrM34_V2.0430 PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 7.476e-20
Identity = 28/61 (45.90%), Postives = 40/61 (65.57%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+  T + V G+ +LT F  M  TTDK+ SL+R W T +E  V+V+T D +T+RLF + FT
Sbjct:   86 KVRFTVQEVQGRNLLTQFHSMEMTTDKMASLLRKWCTTMETTVEVRTADGYTMRLFVVAFT 146          

HSP 2 Score: 53.1434 bits (126), Expect = 7.476e-20
Identity = 24/86 (27.91%), Postives = 45/86 (52.33%), Query Frame = 3
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHG 542
            NQ  R CYA+   +  +R ++ +++    +   +K  V      V+   + +  + I PL+ + IRKV++++ PKFD   L+  HG
Sbjct:  151 NQQSRNCYAKQRLVKWLRMRVTKMIKRRLSKVQIKEAVSLLTRNVLSDALVRRCNPIVPLREMRIRKVRVVRTPKFDAQALLNAHG 236          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_ENCCU (40S ribosomal protein S1 OS=Encephalitozoon cuniculi GN=RPS1 PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 6.984e-17
Identity = 27/76 (35.53%), Postives = 47/76 (61.84%), Query Frame = 3
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKA 503
            R P  VK+TCY +     +IR+ M +++    + CD++ +++    E +G+ IE+  S I+PLQN  +RKVK +K+
Sbjct:   97 RHPGYVKKTCYVKHSDEKKIRKIMFDVIEEELSGCDVQKIMKKLANETVGKRIEELGSEIFPLQNCCVRKVKTIKS 172          

HSP 2 Score: 45.8246 bits (107), Expect = 6.984e-17
Identity = 20/53 (37.74%), Postives = 30/53 (56.60%), Query Frame = 2
Query:  113 VXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            + G   +  F GM  T+DK  ++++ WHTLIEA  D+   D    R+F +G T
Sbjct:   43 IKGSECVGFFDGMELTSDKHKAMIKKWHTLIEAQKDIVAKDGSVFRVFVMGVT 95          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_NOSCE (40S ribosomal protein S1 OS=Nosema ceranae (strain BRL01) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 1.979e-16
Identity = 30/90 (33.33%), Postives = 48/90 (53.33%), Query Frame = 3
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 545
            + P    +  Y +T +  +IR+ M +++       DL  +++   AEVIG+ +EK  S IYPLQN  + KVK +K  K D    ME+  +
Sbjct:  147 KTPTCTSKRVYCKTSEEKKIRKVMFDVIEEELKGEDLNKIMKKLAAEVIGKSVEKKGSLIYPLQNCCVIKVKTVKRGK-DTSNAMEIEAN 235          

HSP 2 Score: 50.8322 bits (120), Expect = 1.979e-16
Identity = 25/64 (39.06%), Postives = 34/64 (53.12%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXET 280
            K       V GK  +  F GM+ T+DK+  ++R WHTLIEA  D+   D   LR+F    T +T
Sbjct:   85 KFSFRVNEVRGKDCIGVFDGMHMTSDKVKGIIRKWHTLIEAEKDIVAKDGTILRVFVNAVTKKT 148          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_GUITH (40S ribosomal protein S3a OS=Guillardia theta PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 2.342e-13
Identity = 25/74 (33.78%), Postives = 39/74 (52.70%), Query Frame = 2
Query:   68 KKSMLTVKIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETSKP 289
            K+   ++     +  +      T F G+  T DK+ SL++ WHTLIE  V+ KT D + L+LF I    ++ KP
Sbjct:   72 KEEFSSINFNFKSLKIFNNECFTKFHGLTLTRDKICSLIKKWHTLIEVEVNFKTKDGYFLKLFLIA---QSKKP 142          

HSP 2 Score: 43.1282 bits (100), Expect = 2.342e-13
Identity = 20/72 (27.78%), Postives = 39/72 (54.17%), Query Frame = 3
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILK 500
            N   +T Y  + Q   +RR++ +I++    + D+K  +    +  I  +IE   S I+P+  V IRK+K+++
Sbjct:  144 NMKSKTVYINSSQKRALRRRITDIIIKEGINMDIKDFIHRIYSLKIYEKIEINCSKIFPIHQVNIRKIKVVE 215          
The following BLAST results are available for this feature:
BLAST of CF417578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
RS3A2_LEIIN4.419e-2047.5440S ribosomal protein S3a-2 OS=Leishmania infantum... [more]
RS3A1_LEIIN4.419e-2047.5440S ribosomal protein S3a-1 OS=Leishmania infantum... [more]
RS3A2_TRYCR4.420e-2044.6240S ribosomal protein S3a-2 OS=Trypanosoma cruzi G... [more]
RS3A1_TRYCR4.420e-2044.6240S ribosomal protein S3a-1 OS=Trypanosoma cruzi G... [more]
RS3A_LEIBR7.476e-2045.9040S ribosomal protein S3a OS=Leishmania braziliens... [more]
RS3A_ENCCU6.984e-1735.5340S ribosomal protein S1 OS=Encephalitozoon cunicu... [more]
RS3A_NOSCE1.979e-1633.3340S ribosomal protein S1 OS=Nosema ceranae (strain... [more]
RS3A_GUITH2.342e-1333.7840S ribosomal protein S3a OS=Guillardia theta PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-508 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417578 ID=CF417578; Name=CF417578; organism=Citrus sinensis; type=EST; length=652bp
AAGATTGCATCAGAAGGTCTCAAGCACNNAGTGTTTGAGAGTATCACTAG
CGTGATCTTCTCAACTGAAGAAGAGCATGCTTACAGTGAAGATCNCACTG
ACAGCTGAANATGTCCNAGGGAAGANTGTTTTGACTANCTTCTGGGGCAT
GAATTTCACTACAGACAAGCTGANGTCTTTGGTTAGGAANTGGCATACCT
TGATTGAAGCTTACGTGGATGTCAAGACCACTGATAACTTCACATTGAGG
TTGTTCTGCATTGGATTCACCAANGAGACTTCCAAACCAGGTTAAGAGGA
CTTGCTACGCACAGACCANCCAGATTACACAGATTCGCCGCAAGATGAGG
GAGATCATGGTTGCTCANGCAGCATCTTGTGATCTTAAGAGCTTGGTCGA
ANAGTTCATTGCTGAAGTGATTGGAAGAGAGATTGAGAAGGCAACGTCAA
GCATATACCCCTTACAAAATGTGTTCATTCGCAAAGTGAAGATCCTGAAA
GCTCCCAAGTTTGATCTTGGAAAATTGATGGAGGTTCACGGNGATTACTC
GGAAGATGTTGGTGTGAAGGTGGATAGGCCANCTGATGANCCCATGCCTG
AAGCANCAACTGAAGTGATTGGAGCTTGAACGTGAATGAAGAAATTTTTC
TA
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