CF417578

Overview
NameCF417578
Unique NameCF417578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1516 contig Csv1_Contig1516:236..885. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_PHANO (40S ribosomal protein S1 OS=Phaeosphaeria nodorum GN=RPS1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.227e-44
Identity = 63/108 (58.33%), Postives = 78/108 (72.22%), Query Frame = 3 
Query:  258 ALDSPXRLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDR 578
            A+    R PNQ+K+T YA + QI  IR+KM EIM   A+SC L  L +  I EVIGREIEK+T  IYPLQNV +RKVK+LKAPKFDLG L+ +HG+ S +D G KV+R
Sbjct:  138 AIGFTKRRPNQIKKTTYAASSQIRAIRKKMVEIMTRDASSCTLAQLTQKLIPEVIGREIEKSTQGIYPLQNVHVRKVKLLKAPKFDLGALLGLHGESSADDSGQKVER 245

HSP 2 Score: 76.2554 bits (186), Expect = 6.227e-44
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + V GK  LT F G++FT+DKL SLVR W TLIEA V VKTTD++ LRLF IGFT
Sbjct:   82 KVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVVVKTTDDYLLRLFAIGFT 142
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_ASPOR (40S ribosomal protein S1 OS=Aspergillus oryzae GN=rps1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.113e-44
Identity = 64/102 (62.75%), Postives = 76/102 (74.51%), Query Frame = 3 
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDR 578
            R PNQ+K+T YA++ QI  IR+KM EIM   AASC L  L    I EVIGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G KV+R
Sbjct:  145 RRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCTLSQLTTKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVER 246

HSP 2 Score: 74.3294 bits (181), Expect = 8.113e-44
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + + GK  LT F G++FTTDKL SLVR W +LIEA V VKTTD++ LRLF I FT
Sbjct:   83 KVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFT 143
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_ASPFN (40S ribosomal protein S1 OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=rps1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.113e-44
Identity = 64/102 (62.75%), Postives = 76/102 (74.51%), Query Frame = 3 
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDR 578
            R PNQ+K+T YA++ QI  IR+KM EIM   AASC L  L    I EVIGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G KV+R
Sbjct:  145 RRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCTLSQLTTKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVER 246

HSP 2 Score: 74.3294 bits (181), Expect = 8.113e-44
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + + GK  LT F G++FTTDKL SLVR W +LIEA V VKTTD++ LRLF I FT
Sbjct:   83 KVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFT 143
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_NEOFI (40S ribosomal protein S1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rps1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 8.113e-44
Identity = 64/102 (62.75%), Postives = 76/102 (74.51%), Query Frame = 3 
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDR 578
            R PNQ+K+T YA++ QI  IR+KM EIM   AASC L  L    I EVIGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G KV+R
Sbjct:  145 RRPNQIKKTTYARSSQIRAIRKKMIEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVER 246

HSP 2 Score: 74.7146 bits (182), Expect = 8.113e-44
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + V GK  LT F G++FTTDKL SLVR W +LIEA V VKTTD++ LRLF I FT
Sbjct:   83 KVKLRVDEVQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFT 143
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_ASPFU (40S ribosomal protein S1 OS=Aspergillus fumigatus GN=rps1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 8.113e-44
Identity = 64/102 (62.75%), Postives = 76/102 (74.51%), Query Frame = 3 
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDR 578
            R PNQ+K+T YA++ QI  IR+KM EIM   AASC L  L    I EVIGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G KV+R
Sbjct:  145 RRPNQIKKTTYARSSQIRAIRKKMIEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVER 246

HSP 2 Score: 74.7146 bits (182), Expect = 8.113e-44
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + V GK  LT F G++FTTDKL SLVR W +LIEA V VKTTD++ LRLF I FT
Sbjct:   83 KVKLRVDEVQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFT 143
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_ASPFC (40S ribosomal protein S1 OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=rps1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 8.113e-44
Identity = 64/102 (62.75%), Postives = 76/102 (74.51%), Query Frame = 3 
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDR 578
            R PNQ+K+T YA++ QI  IR+KM EIM   AASC L  L    I EVIGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G KV+R
Sbjct:  145 RRPNQIKKTTYARSSQIRAIRKKMIEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVER 246

HSP 2 Score: 74.7146 bits (182), Expect = 8.113e-44
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + V GK  LT F G++FTTDKL SLVR W +LIEA V VKTTD++ LRLF I FT
Sbjct:   83 KVKLRVDEVQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFT 143
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_YARLI (40S ribosomal protein S1 OS=Yarrowia lipolytica GN=RPS1 PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.057e-43
Identity = 62/101 (61.39%), Postives = 76/101 (75.25%), Query Frame = 3 
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDR 578
            R  NQVK+T YAQT QI QIR+KM +I+V  A++  L  L    I EVIGREIEKAT +IYPLQNV+IRKVK+LK PKFDLG L+ +HG  ++D G KV+R
Sbjct:  145 RQANQVKKTTYAQTSQINQIRKKMTDIVVREASNVTLAQLTAKLIPEVIGREIEKATQNIYPLQNVYIRKVKLLKQPKFDLGALLALHGGATDDNGKKVNR 245

HSP 2 Score: 75.0998 bits (183), Expect = 1.057e-43
Identity = 43/79 (54.43%), Postives = 53/79 (67.09%), Query Frame = 2 
Query:   35 LRVSLA*SSQLKKSMLTVKIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            L VSLA   Q ++     K+ L  + V GK +LT F G +FT+DKL SLVR W TLIEA V VKT+D++ LRLF IGFT
Sbjct:   66 LEVSLA-DLQGQEDHSFKKVKLRVDEVQGKNLLTNFHGFDFTSDKLRSLVRKWQTLIEANVTVKTSDDYFLRLFVIGFT 143
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_ASPTN (40S ribosomal protein S1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rps1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.795e-43
Identity = 63/102 (61.76%), Postives = 76/102 (74.51%), Query Frame = 3 
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDR 578
            R PNQ+K+T YA++ QI  IR+KM EIM   AASC L  L    I EVIGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G KV+R
Sbjct:  145 RRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCSLAQLTTKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDKGHKVER 246

HSP 2 Score: 74.3294 bits (181), Expect = 1.795e-43
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + + GK  LT F G++FTTDKL SLVR W +LIEA V VKTTD++ LRLF I FT
Sbjct:   83 KVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFT 143
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_ASPNC (40S ribosomal protein S1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rps1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.795e-43
Identity = 63/102 (61.76%), Postives = 76/102 (74.51%), Query Frame = 3 
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDR 578
            R PNQ+K+T YA++ QI  IR+KM EIM   AASC L  L    I EVIGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G KV+R
Sbjct:  145 RRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCSLAQLTTKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDKGHKVER 246

HSP 2 Score: 74.3294 bits (181), Expect = 1.795e-43
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + + GK  LT F G++FTTDKL SLVR W +LIEA V VKTTD++ LRLF I FT
Sbjct:   83 KVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFT 143
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_CRYNE (40S ribosomal protein S1 OS=Cryptococcus neoformans GN=RPS1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.972e-43
Identity = 59/121 (48.76%), Postives = 76/121 (62.81%), Query Frame = 3 
Query:  258 ALDSPXRLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-DVGVKVDRPXDXPMPEAXTEV 617
            A+    R  NQVK+T YAQ+ Q+ +IR KM EIM   A   DLK LV+ F+ E IGREIEKA   IYPL NV++RK KI+K PK D+ KL+E HG+  + + G KV +  +   PE    V
Sbjct:  139 AIGFTKRQSNQVKKTTYAQSSQLKEIRAKMVEIMRREAEGSDLKELVQKFVPESIGREIEKAAKGIYPLHNVYVRKAKIVKTPKIDMSKLLESHGEAMDANTGSKVVKSGEFVEPEILESV 259

HSP 2 Score: 85.1149 bits (209), Expect = 3.972e-43
Identity = 41/65 (63.08%), Postives = 48/65 (73.85%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETS 283
            KI L  E V GK  LT F+GM+FTTDKL S+VR W +L+EA+VDVKTTD + LRLF IGFT   S
Sbjct:   83 KIKLRVEDVAGKSCLTSFYGMDFTTDKLRSIVRKWQSLVEAHVDVKTTDGYVLRLFAIGFTKRQS 147
The following BLAST results are available for this feature:
BLAST of CF417578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
RS3A_PHANO6.227e-4458.3340S ribosomal protein S1 OS=Phaeosphaeria nodorum ... [more]
RS3A_ASPOR8.113e-4462.7540S ribosomal protein S1 OS=Aspergillus oryzae GN=... [more]
RS3A_ASPFN8.113e-4462.7540S ribosomal protein S1 OS=Aspergillus flavus (st... [more]
RS3A_NEOFI8.113e-4462.7540S ribosomal protein S1 OS=Neosartorya fischeri (... [more]
RS3A_ASPFU8.113e-4462.7540S ribosomal protein S1 OS=Aspergillus fumigatus ... [more]
RS3A_ASPFC8.113e-4462.7540S ribosomal protein S1 OS=Aspergillus fumigatus ... [more]
RS3A_YARLI1.057e-4361.3940S ribosomal protein S1 OS=Yarrowia lipolytica GN... [more]
RS3A_ASPTN1.795e-4361.7640S ribosomal protein S1 OS=Aspergillus terreus (s... [more]
RS3A_ASPNC1.795e-4361.7640S ribosomal protein S1 OS=Aspergillus niger (str... [more]
RS3A_CRYNE3.972e-4348.7640S ribosomal protein S1 OS=Cryptococcus neoforman... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-508 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417578 ID=CF417578; Name=CF417578; organism=Citrus sinensis; type=EST; length=652bp
AAGATTGCATCAGAAGGTCTCAAGCACNNAGTGTTTGAGAGTATCACTAG
CGTGATCTTCTCAACTGAAGAAGAGCATGCTTACAGTGAAGATCNCACTG
ACAGCTGAANATGTCCNAGGGAAGANTGTTTTGACTANCTTCTGGGGCAT
GAATTTCACTACAGACAAGCTGANGTCTTTGGTTAGGAANTGGCATACCT
TGATTGAAGCTTACGTGGATGTCAAGACCACTGATAACTTCACATTGAGG
TTGTTCTGCATTGGATTCACCAANGAGACTTCCAAACCAGGTTAAGAGGA
CTTGCTACGCACAGACCANCCAGATTACACAGATTCGCCGCAAGATGAGG
GAGATCATGGTTGCTCANGCAGCATCTTGTGATCTTAAGAGCTTGGTCGA
ANAGTTCATTGCTGAAGTGATTGGAAGAGAGATTGAGAAGGCAACGTCAA
GCATATACCCCTTACAAAATGTGTTCATTCGCAAAGTGAAGATCCTGAAA
GCTCCCAAGTTTGATCTTGGAAAATTGATGGAGGTTCACGGNGATTACTC
GGAAGATGTTGGTGTGAAGGTGGATAGGCCANCTGATGANCCCATGCCTG
AAGCANCAACTGAAGTGATTGGAGCTTGAACGTGAATGAAGAAATTTTTC
TA
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