CF417578 | Citrus Genome Database

Overview


Name	CF417578
Unique Name	CF417578
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	652

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_NEUCR (40S ribosomal protein S1 OS=Neurospora crassa GN=crp-8 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.973e-43
Identity = 64/102 (62.75%), Postives = 74/102 (72.55%), Query Frame = 3

Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKVDR 578
            R PNQVK+T YA + QI  IRRKM EI+   A+SC L  L    I EVIGREIEKAT  IYPLQNV IRKVK+LK PKFDLG LM +HG+  S++ G KV+R
Sbjct:  145 RRPNQVKKTTYAASSQIRAIRRKMTEIIQREASSCTLTQLTSKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGALMSLHGESGSDEAGQKVER 246

HSP 2 Score: 73.9442 bits (180), Expect = 3.973e-43
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 2

Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + + GK  LT F G++FT+DKL SLVR W TLIEA + VKTTD++ LRLF I FT
Sbjct:   83 KVKLRVDEIQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANITVKTTDDYLLRLFAIAFT 143

[Close]

BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_CHAGB (40S ribosomal protein S1 OS=Chaetomium globosum GN=RPS1 PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 6.746e-43
Identity = 65/102 (63.73%), Postives = 73/102 (71.57%), Query Frame = 3

Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED-VGVKVDR 578
            R PNQ+K+T YA T QI  IRRKM EI+   A+SC L  L    I EVIGREIEKAT  IYPLQNV IRKVK+LK PKFDLG LM +HG+ S D  G KV+R
Sbjct:  145 RRPNQIKKTTYAATSQIRAIRRKMTEIIQREASSCTLTQLTSKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGALMTLHGESSTDEQGQKVER 246

HSP 2 Score: 72.7886 bits (177), Expect = 6.746e-43
Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 2

Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            KI L  + V GK  LT F G++FT+DKL SLVR W TLIEA V V TTD++ LRLF I FT
Sbjct:   83 KIKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVMTTDHYLLRLFAIAFT 143

[Close]

BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_EMENI (40S ribosomal protein S1 OS=Emericella nidulans GN=rps1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.791e-43
Identity = 61/102 (59.80%), Postives = 76/102 (74.51%), Query Frame = 3

Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDR 578
            R PNQ+K+T YA++ QI  IR+KM EIM   A+SC L  L    I EVIGREIEKAT  IYPLQ+V IRKVK+LK+PKFDLG L+ +HG+  ++D G KV+R
Sbjct:  145 RRPNQIKKTTYARSSQIRAIRKKMTEIMQREASSCSLAQLTSKLIPEVIGREIEKATQGIYPLQHVHIRKVKLLKSPKFDLGALLNLHGESTTDDKGQKVER 246

HSP 2 Score: 74.3294 bits (181), Expect = 8.791e-43
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2

Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + + GK  LT F G++FTTDKL SLVR W +LIEA V VKTTD++ LRLF I FT
Sbjct:   83 KVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFT 143

[Close]

BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_TALSN (40S ribosomal protein S1 OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) GN=rps1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.535e-42
Identity = 61/102 (59.80%), Postives = 76/102 (74.51%), Query Frame = 3

Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDR 578
            R PNQ+K+T YA++ QI  IR+KM EI+   AASC L  L    I EVIGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G KV+R
Sbjct:  145 RRPNQIKKTTYARSSQIRAIRKKMTEIIQREAASCTLSQLTTKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDQGHKVER 246

HSP 2 Score: 73.1738 bits (178), Expect = 2.535e-42
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2

Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + V GK  LT F G++FT+DKL SLVR W +LIEA V VKTTD++ LRLF I FT
Sbjct:   83 KVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFT 143

[Close]

BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_NECH7 (40S ribosomal protein S1 OS=Nectria haematococca (strain 77-13-4 / FGSC 9596 / MPVI) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.535e-42
Identity = 61/102 (59.80%), Postives = 75/102 (73.53%), Query Frame = 3

Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKVDR 578
            R PNQ+K+T YA + QI  IRRKM +I+   A+SC L  L    I EVIGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG LM +HG+  ++D G KV+R
Sbjct:  145 RRPNQIKKTTYAASSQIRAIRRKMTDIIQREASSCTLTQLTSKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALMALHGESGTDDQGQKVER 246

HSP 2 Score: 73.9442 bits (180), Expect = 2.535e-42
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2

Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + V GK  LT F G++FT+DKL SLVR W TLIEA V VKTTD++ +RLF I FT
Sbjct:   83 KVRLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLIRLFAIAFT 143

[Close]

BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_IXOSC (40S ribosomal protein S3a OS=Ixodes scapularis PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.917e-42
Identity = 57/122 (46.72%), Postives = 76/122 (62.30%), Query Frame = 3

Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-------------DVGVKVDRPXDXPMPEAXT 611
            NQ+K+TCYAQ  Q+  IR+KM E+MV   +S +LK +V   I   IG++IEK+   IYPL +V IRKVK+LK PKF+LGKL+E+HG+ +              + GVKVDRP     P   T
Sbjct:  148 NQLKKTCYAQHNQVRLIRKKMTEMMVVEVSSSNLKDVVNKLIPGSIGKDIEKSCQHIYPLHDVLIRKVKVLKKPKFELGKLLELHGEGTSKGGAASTAAVAKGEEGVKVDRPEGYEPPVLET 269

HSP 2 Score: 81.6481 bits (200), Expect = 2.917e-42
Identity = 39/61 (63.93%), Postives = 46/61 (75.41%), Query Frame = 2

Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L AE V G+ VLT F GM+ TTDKL S+V+ W TLIEA VDV+TTD + LR+FCIGFT
Sbjct:   83 KFRLIAEEVQGRNVLTNFHGMDLTTDKLRSMVKKWQTLIEATVDVRTTDGYLLRMFCIGFT 143

HSP 3 Score: 23.8682 bits (50), Expect = 2.917e-42
Identity = 16/28 (57.14%), Postives = 16/28 (57.14%), Query Frame = 1

Query:    1 KIASEGLKHXVFESITSVIFSTEEEHAY 84
            KIASEGLK  VFE   S    T  E AY
Sbjct:   56 KIASEGLKGRVFE--VSQADLTNGEDAY 81

[Close]

BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_PENMQ (40S ribosomal protein S1 OS=Penicillium marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) GN=rps1 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.608e-42
Identity = 61/102 (59.80%), Postives = 75/102 (73.53%), Query Frame = 3

Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDR 578
            R PNQ+K+T YA + QI  IR+KM EI+   AASC L  L    I EVIGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G KV+R
Sbjct:  145 RRPNQIKKTTYAGSSQIRAIRKKMTEIIQREAASCTLSQLTTKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDQGHKVER 246

HSP 2 Score: 73.1738 bits (178), Expect = 5.608e-42
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2

Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + V GK  LT F G++FT+DKL SLVR W +LIEA V VKTTD++ LRLF I FT
Sbjct:   83 KVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFT 143

[Close]

BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_PENCW (40S ribosomal protein S1 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=rps1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.608e-42
Identity = 59/102 (57.84%), Postives = 76/102 (74.51%), Query Frame = 3

Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDR 578
            R PNQ+K+T YA++ QI  IR+KM EI+   A++C L  L    I EVIGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G KV+R
Sbjct:  145 RRPNQIKKTTYARSSQIRAIRKKMTEIIQREASTCTLSQLTHKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESATDDKGQKVER 246

HSP 2 Score: 73.9442 bits (180), Expect = 5.608e-42
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 2

Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + + GK  LT F G++FTTDKL SLVR W +LIEA + VKTTD++ LRLF I FT
Sbjct:   83 KVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANITVKTTDDYLLRLFAIAFT 143

[Close]

BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_MAGGR (40S ribosomal protein S1 OS=Magnaporthe grisea GN=RPS1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.522e-42
Identity = 61/102 (59.80%), Postives = 74/102 (72.55%), Query Frame = 3

Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED-VGVKVDR 578
            R PNQ+K+T YA + QI  IRRKM EI+   A++C L+ L    I EVIGREIEKAT  IYPLQNV IRKVK+LK PKFDLG L+ +HG+ + D  G KV+R
Sbjct:  145 RRPNQIKKTTYAASSQIRAIRRKMTEIIQREASTCTLQQLTNKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGGLLALHGESTTDEQGQKVER 246

HSP 2 Score: 73.559 bits (179), Expect = 9.522e-42
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 2

Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            KI L  + V GK  LT F G++FT+DKL SLVR W +LIEA V VKTTD++ LRLF I FT
Sbjct:   83 KIKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFT 143

[Close]

BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_SCLS1 (40S ribosomal protein S1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rps1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.241e-41
Identity = 61/102 (59.80%), Postives = 74/102 (72.55%), Query Frame = 3

Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED-VGVKVDR 578
            R PNQ+K+T YA + QI  IR+KM EI+   A++C L  L    I EVIGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+ + D  G KV+R
Sbjct:  145 RRPNQIKKTTYAASSQIRAIRKKMTEIIQREASTCTLTQLTAKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESNTDEQGQKVER 246

HSP 2 Score: 72.7886 bits (177), Expect = 1.241e-41
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 2

Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + V GK  LT F G++FT+DKL SLVR W +LIEA + VKTTD++ LRLF I FT
Sbjct:   83 KVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANITVKTTDDYLLRLFAIAFT 143

The following BLAST results are available for this feature:

BLAST of CF417578 vs. ExPASy Swiss-Prot

BLAST of CF417578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158


Match Name	E-value	Identity	Description
RS3A_NEUCR	3.973e-43	62.75	40S ribosomal protein S1 OS=Neurospora crassa GN=c...	[more]
RS3A_CHAGB	6.746e-43	63.73	40S ribosomal protein S1 OS=Chaetomium globosum GN...	[more]
RS3A_EMENI	8.791e-43	59.80	40S ribosomal protein S1 OS=Emericella nidulans GN...	[more]
RS3A_TALSN	2.535e-42	59.80	40S ribosomal protein S1 OS=Talaromyces stipitatus...	[more]
RS3A_NECH7	2.535e-42	59.80	40S ribosomal protein S1 OS=Nectria haematococca (...	[more]
RS3A_IXOSC	2.917e-42	46.72	40S ribosomal protein S3a OS=Ixodes scapularis PE=...	[more]
RS3A_PENMQ	5.608e-42	59.80	40S ribosomal protein S1 OS=Penicillium marneffei ...	[more]
RS3A_PENCW	5.608e-42	57.84	40S ribosomal protein S1 OS=Penicillium chrysogenu...	[more]
RS3A_MAGGR	9.522e-42	59.80	40S ribosomal protein S1 OS=Magnaporthe grisea GN=...	[more]
RS3A_SCLS1	1.241e-41	59.80	40S ribosomal protein S1 OS=Sclerotinia sclerotior...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-508 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_G10 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417578 ID=CF417578; Name=CF417578; organism=Citrus sinensis; type=EST; length=652bp
AAGATTGCATCAGAAGGTCTCAAGCACNNAGTGTTTGAGAGTATCACTAG
CGTGATCTTCTCAACTGAAGAAGAGCATGCTTACAGTGAAGATCNCACTG
ACAGCTGAANATGTCCNAGGGAAGANTGTTTTGACTANCTTCTGGGGCAT
GAATTTCACTACAGACAAGCTGANGTCTTTGGTTAGGAANTGGCATACCT
TGATTGAAGCTTACGTGGATGTCAAGACCACTGATAACTTCACATTGAGG
TTGTTCTGCATTGGATTCACCAANGAGACTTCCAAACCAGGTTAAGAGGA
CTTGCTACGCACAGACCANCCAGATTACACAGATTCGCCGCAAGATGAGG
GAGATCATGGTTGCTCANGCAGCATCTTGTGATCTTAAGAGCTTGGTCGA
ANAGTTCATTGCTGAAGTGATTGGAAGAGAGATTGAGAAGGCAACGTCAA
GCATATACCCCTTACAAAATGTGTTCATTCGCAAAGTGAAGATCCTGAAA
GCTCCCAAGTTTGATCTTGGAAAATTGATGGAGGTTCACGGNGATTACTC
GGAAGATGTTGGTGTGAAGGTGGATAGGCCANCTGATGANCCCATGCCTG
AAGCANCAACTGAAGTGATTGGAGCTTGAACGTGAATGAAGAAATTTTTC
TA