CF417578

Overview
NameCF417578
Unique NameCF417578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1516 contig Csv1_Contig1516:236..885. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_BOTFB (40S ribosomal protein S1 OS=Botryotinia fuckeliana (strain B05.10) GN=rps1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.241e-41
Identity = 61/102 (59.80%), Postives = 74/102 (72.55%), Query Frame = 3 
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED-VGVKVDR 578
            R PNQ+K+T YA + QI  IR+KM EI+   A++C L  L    I EVIGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+ + D  G KV+R
Sbjct:  145 RRPNQIKKTTYAASSQIRAIRKKMTEIIQREASTCTLTQLTAKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESNTDEQGQKVER 246

HSP 2 Score: 72.7886 bits (177), Expect = 1.241e-41
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + V GK  LT F G++FT+DKL SLVR W +LIEA + VKTTD++ LRLF I FT
Sbjct:   83 KVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANITVKTTDDYLLRLFAIAFT 143
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_NANOT (40S ribosomal protein S1 OS=Nannizzia otae (strain CBS 113480) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.241e-41
Identity = 61/102 (59.80%), Postives = 77/102 (75.49%), Query Frame = 3 
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDR 578
            R PNQ+K+T YAQ+ QI  IR+KM EI+   A+SC L  L +  + EVIGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G KV+R
Sbjct:  145 RRPNQIKKTTYAQSSQIRAIRKKMTEIIQRQASSCTLTQLTK-LVPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLALHGEASTDDKGQKVER 245

HSP 2 Score: 73.559 bits (179), Expect = 1.241e-41
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + V GK  LT F G++FT+DKL SLVR W TLIEA V VKTTD++ +RLF I FT
Sbjct:   83 KVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLVRLFAIAFT 143
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_MACFA (40S ribosomal protein S3a OS=Macaca fascicularis GN=RPS3A PE=2 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.411e-41
Identity = 55/105 (52.38%), Postives = 74/105 (70.48%), Query Frame = 3 
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKVDR 578
            NQ+++T YAQ  Q+ QIR+KM EIM     + DLK +V   I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G KV+R
Sbjct:  148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 252

HSP 2 Score: 78.5666 bits (192), Expect = 1.411e-41
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L  E V GK  LT F GM+ T DK+ S+V+ W T+IEA+VDVKTTD + LRLFC+GFT
Sbjct:   83 KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143

HSP 3 Score: 22.3274 bits (46), Expect = 1.411e-41
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:    1 KIASEGLKHXVFE 39
            KIAS+GLK  VFE
Sbjct:   56 KIASDGLKGHVFE 68
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_HUMAN (40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.411e-41
Identity = 55/105 (52.38%), Postives = 74/105 (70.48%), Query Frame = 3 
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKVDR 578
            NQ+++T YAQ  Q+ QIR+KM EIM     + DLK +V   I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G KV+R
Sbjct:  148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 252

HSP 2 Score: 78.5666 bits (192), Expect = 1.411e-41
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L  E V GK  LT F GM+ T DK+ S+V+ W T+IEA+VDVKTTD + LRLFC+GFT
Sbjct:   83 KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143

HSP 3 Score: 22.3274 bits (46), Expect = 1.411e-41
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:    1 KIASEGLKHXVFE 39
            KIAS+GLK  VFE
Sbjct:   56 KIASDGLKGRVFE 68
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_CALJA (40S ribosomal protein S3a OS=Callithrix jacchus GN=RPS3A PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.411e-41
Identity = 55/105 (52.38%), Postives = 74/105 (70.48%), Query Frame = 3 
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKVDR 578
            NQ+++T YAQ  Q+ QIR+KM EIM     + DLK +V   I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G KV+R
Sbjct:  148 NQIRKTSYAQHQQVCQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKIPKFELGKLMELHGEGSSSGKATGDETGAKVER 252

HSP 2 Score: 78.5666 bits (192), Expect = 1.411e-41
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L  E V GK  LT F GM+ T DK+ S+V+ W T+IEA+VDVKTTD + LRLFC+GFT
Sbjct:   83 KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143

HSP 3 Score: 22.3274 bits (46), Expect = 1.411e-41
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:    1 KIASEGLKHXVFE 39
            KIAS+GLK  VFE
Sbjct:   56 KIASDGLKGRVFE 68
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_BOVIN (40S ribosomal protein S3a OS=Bos taurus GN=RPS3A PE=2 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.411e-41
Identity = 55/105 (52.38%), Postives = 74/105 (70.48%), Query Frame = 3 
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKVDR 578
            NQ+++T YAQ  Q+ QIR+KM EIM     + DLK +V   I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G KV+R
Sbjct:  148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 252

HSP 2 Score: 78.5666 bits (192), Expect = 1.411e-41
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L  E V GK  LT F GM+ T DK+ S+V+ W T+IEA+VDVKTTD + LRLFC+GFT
Sbjct:   83 KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143

HSP 3 Score: 22.3274 bits (46), Expect = 1.411e-41
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:    1 KIASEGLKHXVFE 39
            KIAS+GLK  VFE
Sbjct:   56 KIASDGLKGRVFE 68
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_FELCA (40S ribosomal protein S3a (Fragment) OS=Felis catus GN=RPS3A PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.411e-41
Identity = 55/105 (52.38%), Postives = 74/105 (70.48%), Query Frame = 3 
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKVDR 578
            NQ+++T YAQ  Q+ QIR+KM EIM     + DLK +V   I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G KV+R
Sbjct:  144 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 248

HSP 2 Score: 78.5666 bits (192), Expect = 1.411e-41
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L  E V GK  LT F GM+ T DK+ S+V+ W T+IEA+VDVKTTD + LRLFC+GFT
Sbjct:   79 KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 139

HSP 3 Score: 22.3274 bits (46), Expect = 1.411e-41
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:    1 KIASEGLKHXVFE 39
            KIAS+GLK  VFE
Sbjct:   52 KIASDGLKGRVFE 64
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_PERAM (40S ribosomal protein S3a OS=Periplaneta americana GN=Parcxpwex01 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.834e-41
Identity = 51/109 (46.79%), Postives = 71/109 (65.14%), Query Frame = 3 
Query:  294 KRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKVDRPXDXPMPEAXT 611
            ++TCYAQ  Q+  IR+KM EI+     S DLK +V   + + I ++IEKA   IYPL +V+IRKVK+LK P+F+L KL+E+HGD    S++ G +VDRP     P   T
Sbjct:  154 RKTCYAQHTQVRAIRKKMVEIITRDVTSSDLKEVVNKLLPDSIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDGKGGSDEPGARVDRPEGYEPPVQET 262

HSP 2 Score: 82.4185 bits (202), Expect = 1.834e-41
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L AE V G+ VLT F GM+ TTDKL S+V+ W TLIEA VDVKTTD + LR+FCIGFT
Sbjct:   86 KFRLIAEDVQGRNVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRVFCIGFT 146

HSP 3 Score: 25.0238 bits (53), Expect = 1.834e-41
Identity = 11/13 (84.62%), Postives = 12/13 (92.31%), Query Frame = 1 
Query:    1 KIASEGLKHXVFE 39
            KIASEGLK+ VFE
Sbjct:   56 KIASEGLKYRVFE 68
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_NEMVE (40S ribosomal protein S3a OS=Nematostella vectensis GN=v1g242621 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.385e-41
Identity = 54/114 (47.37%), Postives = 75/114 (65.79%), Query Frame = 3 
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS--------EDVGVKVDRPXDXP 593
            R  NQ+K+T YA+  QI  IR+KM +I+    ++ DLK +V   I + IG++IEK+  SIYPL +V IRKVK+LK PKFD+GKLME+HG+ S        ++ G K+DR    P
Sbjct:  144 RRQNQIKKTAYAKHTQIKAIRKKMVDIITREVSTNDLKEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKPKFDIGKLMEMHGEASSHATTTTTDETGTKIDREGFEP 257

HSP 2 Score: 82.0333 bits (201), Expect = 2.385e-41
Identity = 40/61 (65.57%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L  E V G+  LT F GMN TTDKL SLV+ W TLIEA VDVKTTD + LR+FCIGFT
Sbjct:   82 KFKLMCEEVQGRNCLTNFHGMNMTTDKLRSLVKKWQTLIEAAVDVKTTDGYLLRMFCIGFT 142

HSP 3 Score: 22.3274 bits (46), Expect = 2.385e-41
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:    1 KIASEGLKHXVFE 39
            KIAS+GLK  VFE
Sbjct:   55 KIASDGLKGRVFE 67
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_SALSA (40S ribosomal protein S3a OS=Salmo salar GN=rps3a PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.100e-41
Identity = 54/107 (50.47%), Postives = 73/107 (68.22%), Query Frame = 3 
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKVDR 578
            NQ+++T YAQ  Q+ QIR+KM EIM     + DLK +V   I + +G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+           +D G KVDR
Sbjct:  148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGSSAAKPSGDDTGAKVDR 254

HSP 2 Score: 78.9518 bits (193), Expect = 3.100e-41
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L +E V GK  LT F GM+ T DK+ S+V+ W T+IEA+VDVKTTD + LRLFC+GFT
Sbjct:   83 KFKLISEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143

HSP 3 Score: 21.1718 bits (43), Expect = 3.100e-41
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:    1 KIASEGLKHXVFE 39
            +IAS+GLK  VFE
Sbjct:   56 RIASDGLKGRVFE 68
The following BLAST results are available for this feature:
BLAST of CF417578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
RS3A_BOTFB1.241e-4159.8040S ribosomal protein S1 OS=Botryotinia fuckeliana... [more]
RS3A_NANOT1.241e-4159.8040S ribosomal protein S1 OS=Nannizzia otae (strain... [more]
RS3A_MACFA1.411e-4152.3840S ribosomal protein S3a OS=Macaca fascicularis G... [more]
RS3A_HUMAN1.411e-4152.3840S ribosomal protein S3a OS=Homo sapiens GN=RPS3A... [more]
RS3A_CALJA1.411e-4152.3840S ribosomal protein S3a OS=Callithrix jacchus GN... [more]
RS3A_BOVIN1.411e-4152.3840S ribosomal protein S3a OS=Bos taurus GN=RPS3A P... [more]
RS3A_FELCA1.411e-4152.3840S ribosomal protein S3a (Fragment) OS=Felis catu... [more]
RS3A_PERAM1.834e-4146.7940S ribosomal protein S3a OS=Periplaneta americana... [more]
RS3A_NEMVE2.385e-4147.3740S ribosomal protein S3a OS=Nematostella vectensi... [more]
RS3A_SALSA3.100e-4150.4740S ribosomal protein S3a OS=Salmo salar GN=rps3a ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-508 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417578 ID=CF417578; Name=CF417578; organism=Citrus sinensis; type=EST; length=652bp
AAGATTGCATCAGAAGGTCTCAAGCACNNAGTGTTTGAGAGTATCACTAG
CGTGATCTTCTCAACTGAAGAAGAGCATGCTTACAGTGAAGATCNCACTG
ACAGCTGAANATGTCCNAGGGAAGANTGTTTTGACTANCTTCTGGGGCAT
GAATTTCACTACAGACAAGCTGANGTCTTTGGTTAGGAANTGGCATACCT
TGATTGAAGCTTACGTGGATGTCAAGACCACTGATAACTTCACATTGAGG
TTGTTCTGCATTGGATTCACCAANGAGACTTCCAAACCAGGTTAAGAGGA
CTTGCTACGCACAGACCANCCAGATTACACAGATTCGCCGCAAGATGAGG
GAGATCATGGTTGCTCANGCAGCATCTTGTGATCTTAAGAGCTTGGTCGA
ANAGTTCATTGCTGAAGTGATTGGAAGAGAGATTGAGAAGGCAACGTCAA
GCATATACCCCTTACAAAATGTGTTCATTCGCAAAGTGAAGATCCTGAAA
GCTCCCAAGTTTGATCTTGGAAAATTGATGGAGGTTCACGGNGATTACTC
GGAAGATGTTGGTGTGAAGGTGGATAGGCCANCTGATGANCCCATGCCTG
AAGCANCAACTGAAGTGATTGGAGCTTGAACGTGAATGAAGAAATTTTTC
TA
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