CF417578

Overview
NameCF417578
Unique NameCF417578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_RAT (40S ribosomal protein S3a OS=Rattus norvegicus GN=Rps3a PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.101e-41
Identity = 54/105 (51.43%), Postives = 73/105 (69.52%), Query Frame = 3 
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKVDR 578
            NQ+++T YAQ  Q+ QIR+KM EIM     + DLK +V   I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+         ++ G KV+R
Sbjct:  148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVER 252

HSP 2 Score: 78.5666 bits (192), Expect = 3.101e-41
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L  E V GK  LT F GM+ T DK+ S+V+ W T+IEA+VDVKTTD + LRLFC+GFT
Sbjct:   83 KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143

HSP 3 Score: 22.3274 bits (46), Expect = 3.101e-41
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:    1 KIASEGLKHXVFE 39
            KIAS+GLK  VFE
Sbjct:   56 KIASDGLKGRVFE 68
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_MOUSE (40S ribosomal protein S3a OS=Mus musculus GN=Rps3a PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 3.101e-41
Identity = 54/105 (51.43%), Postives = 73/105 (69.52%), Query Frame = 3 
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKVDR 578
            NQ+++T YAQ  Q+ QIR+KM EIM     + DLK +V   I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+         ++ G KV+R
Sbjct:  148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVER 252

HSP 2 Score: 78.5666 bits (192), Expect = 3.101e-41
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L  E V GK  LT F GM+ T DK+ S+V+ W T+IEA+VDVKTTD + LRLFC+GFT
Sbjct:   83 KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143

HSP 3 Score: 22.3274 bits (46), Expect = 3.101e-41
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:    1 KIASEGLKHXVFE 39
            KIAS+GLK  VFE
Sbjct:   56 KIASDGLKGRVFE 68
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_GECJA (40S ribosomal protein S3a OS=Gecko japonicus GN=RPS3A PE=2 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 3.101e-41
Identity = 54/105 (51.43%), Postives = 74/105 (70.48%), Query Frame = 3 
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKVDR 578
            NQ+++T YAQ  Q+ QIR+KM EIM     + DLK +V   I + IG+++EKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G KV+R
Sbjct:  148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDMEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 252

HSP 2 Score: 78.5666 bits (192), Expect = 3.101e-41
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L  E V GK  LT F GM+ T DK+ S+V+ W T+IEA+VDVKTTD + LRLFC+GFT
Sbjct:   83 KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143

HSP 3 Score: 22.3274 bits (46), Expect = 3.101e-41
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:    1 KIASEGLKHXVFE 39
            KIAS+GLK  VFE
Sbjct:   56 KIASDGLKGRVFE 68
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_ORYLA (40S ribosomal protein S3a OS=Oryzias latipes GN=rps3a PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 4.031e-41
Identity = 54/107 (50.47%), Postives = 73/107 (68.22%), Query Frame = 3 
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKVDR 578
            NQV++T YAQ  Q+ QIR+KM EIM     + DLK +V   I + +G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+           +D G KV+R
Sbjct:  148 NQVRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVER 254

HSP 2 Score: 78.5666 bits (192), Expect = 4.031e-41
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L  E V GK  LT F GM+ T DK+ S+V+ W T+IEA+VDVKTTD + LRLFC+GFT
Sbjct:   83 KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143

HSP 3 Score: 22.3274 bits (46), Expect = 4.031e-41
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:    1 KIASEGLKHXVFE 39
            KIAS+GLK  VFE
Sbjct:   56 KIASDGLKGRVFE 68
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_MALGO (40S ribosomal protein S1 OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.659e-41
Identity = 61/121 (50.41%), Postives = 81/121 (66.94%), Query Frame = 3 
Query:  258 ALDSPXRLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS----EDVGVKV-DRPXDXPMPEA 605
            A+    R  NQVK+T YA++ QI  IR+KM E++   ++SCDL+  V   I EV+GREIEK+T  IYPL++VFI KVK+LK PKFD+ KL E+HG  S    EDVG K+       P+P+A
Sbjct:  138 AIGFTRRRANQVKKTTYAKSSQIHAIRKKMFEVIQRESSSCDLREFVAKLIPEVMGREIEKSTQGIYPLKDVFIHKVKVLKRPKFDVNKLYELHGGASVVGAEDVGTKIKSGEFKEPVPQA 258

HSP 2 Score: 74.7146 bits (182), Expect = 4.659e-41
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L  + V G+  LT F+GM+FT+DKL SLVR W +LIEA+ D++TTD + LR+F IGFT
Sbjct:   82 KFQLRVDEVQGRNCLTNFYGMSFTSDKLRSLVRKWQSLIEAHQDIRTTDGYLLRVFAIGFT 142
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_XENTR (40S ribosomal protein S3a OS=Xenopus tropicalis GN=rps3a PE=2 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 6.817e-41
Identity = 53/105 (50.48%), Postives = 73/105 (69.52%), Query Frame = 3 
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKVDR 578
            NQ+++T YAQ  Q+ QIR+KM EIM     + DLK +V   I + IG++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+         ++ G KV+R
Sbjct:  148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPAGDETGAKVER 252

HSP 2 Score: 78.5666 bits (192), Expect = 6.817e-41
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L  E V GK  LT F GM+ T DK+ S+V+ W T+IEA+VDVKTTD + LRLFC+GFT
Sbjct:   83 KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143

HSP 3 Score: 22.3274 bits (46), Expect = 6.817e-41
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:    1 KIASEGLKHXVFE 39
            KIAS+GLK  VFE
Sbjct:   56 KIASDGLKGRVFE 68
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_TAEGU (40S ribosomal protein S3a OS=Taeniopygia guttata GN=RPS3A PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.817e-41
Identity = 53/105 (50.48%), Postives = 73/105 (69.52%), Query Frame = 3 
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKVDR 578
            NQ+++T YAQ  Q+ QIR+KM EIM     + DLK +V   I + IG++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+         ++ G KV+R
Sbjct:  148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGTKVER 252

HSP 2 Score: 78.5666 bits (192), Expect = 6.817e-41
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L  E V GK  LT F GM+ T DK+ S+V+ W T+IEA+VDVKTTD + LRLFC+GFT
Sbjct:   83 KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143

HSP 3 Score: 22.3274 bits (46), Expect = 6.817e-41
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:    1 KIASEGLKHXVFE 39
            KIAS+GLK  VFE
Sbjct:   56 KIASDGLKGRVFE 68
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_EIMTE (40S ribosomal protein S3a OS=Eimeria tenella PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 8.864e-41
Identity = 53/105 (50.48%), Postives = 73/105 (69.52%), Query Frame = 3 
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKVDR 578
            NQ+++T YAQ  Q+ QIR+KM EIM     + DLK +V   I + IG++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+         ++ G KV+R
Sbjct:  148 NQIRKTSYAQHQQVRQIRKKMMEIMTGEFQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGAKVER 252

HSP 2 Score: 78.5666 bits (192), Expect = 8.864e-41
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L  E V GK  LT F GM+ T DK+ S+V+ W T+IEA+VDVKTTD + LRLFC+GFT
Sbjct:   83 KFKLITEDVQGKNCLTNFHGMDLTRDKMFSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143

HSP 3 Score: 22.3274 bits (46), Expect = 8.864e-41
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:    1 KIASEGLKHXVFE 39
            KIAS+GLK  VFE
Sbjct:   56 KIASDGLKGRVFE 68
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_TETNG (40S ribosomal protein S3a OS=Tetraodon nigroviridis GN=rps3a PE=3 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 1.030e-40
Identity = 55/110 (50.00%), Postives = 74/110 (67.27%), Query Frame = 3 
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKVDR 578
            R  NQ+++T YAQ  Q+ QIR+KM EIM     + DLK +V   I + IG++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+           +D G KV+R
Sbjct:  145 RRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGTAAKATGDDTGAKVER 254

HSP 2 Score: 78.5666 bits (192), Expect = 1.030e-40
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L  E V GK  LT F GM+ T DK+ S+V+ W T+IEA+VDVKTTD + LRLFC+GFT
Sbjct:   83 KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_SOLSE (40S ribosomal protein S3a OS=Solea senegalensis GN=rps3a PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.152e-40
Identity = 53/107 (49.53%), Postives = 73/107 (68.22%), Query Frame = 3 
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKVDR 578
            NQ+++T YAQ  Q+ QIR+KM EIM     + DLK +V   I + +G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+           +D G KV+R
Sbjct:  148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGTGTATKATGDDTGAKVER 254

HSP 2 Score: 78.5666 bits (192), Expect = 1.152e-40
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L  E V GK  LT F GM+ T DK+ S+V+ W T+IEA+VDVKTTD + LRLFC+GFT
Sbjct:   83 KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143

HSP 3 Score: 21.1718 bits (43), Expect = 1.152e-40
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:    1 KIASEGLKHXVFE 39
            +IAS+GLK  VFE
Sbjct:   56 RIASDGLKGRVFE 68
The following BLAST results are available for this feature:
BLAST of CF417578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
RS3A_RAT3.101e-4151.4340S ribosomal protein S3a OS=Rattus norvegicus GN=... [more]
RS3A_MOUSE3.101e-4151.4340S ribosomal protein S3a OS=Mus musculus GN=Rps3a... [more]
RS3A_GECJA3.101e-4151.4340S ribosomal protein S3a OS=Gecko japonicus GN=RP... [more]
RS3A_ORYLA4.031e-4150.4740S ribosomal protein S3a OS=Oryzias latipes GN=rp... [more]
RS3A_MALGO4.659e-4150.4140S ribosomal protein S1 OS=Malassezia globosa (st... [more]
RS3A_XENTR6.817e-4150.4840S ribosomal protein S3a OS=Xenopus tropicalis GN... [more]
RS3A_TAEGU6.817e-4150.4840S ribosomal protein S3a OS=Taeniopygia guttata G... [more]
RS3A_EIMTE8.864e-4150.4840S ribosomal protein S3a OS=Eimeria tenella PE=2 ... [more]
RS3A_TETNG1.030e-4050.0040S ribosomal protein S3a OS=Tetraodon nigroviridi... [more]
RS3A_SOLSE1.152e-4049.5340S ribosomal protein S3a OS=Solea senegalensis GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-508 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417578 ID=CF417578; Name=CF417578; organism=Citrus sinensis; type=EST; length=652bp
AAGATTGCATCAGAAGGTCTCAAGCACNNAGTGTTTGAGAGTATCACTAG
CGTGATCTTCTCAACTGAAGAAGAGCATGCTTACAGTGAAGATCNCACTG
ACAGCTGAANATGTCCNAGGGAAGANTGTTTTGACTANCTTCTGGGGCAT
GAATTTCACTACAGACAAGCTGANGTCTTTGGTTAGGAANTGGCATACCT
TGATTGAAGCTTACGTGGATGTCAAGACCACTGATAACTTCACATTGAGG
TTGTTCTGCATTGGATTCACCAANGAGACTTCCAAACCAGGTTAAGAGGA
CTTGCTACGCACAGACCANCCAGATTACACAGATTCGCCGCAAGATGAGG
GAGATCATGGTTGCTCANGCAGCATCTTGTGATCTTAAGAGCTTGGTCGA
ANAGTTCATTGCTGAAGTGATTGGAAGAGAGATTGAGAAGGCAACGTCAA
GCATATACCCCTTACAAAATGTGTTCATTCGCAAAGTGAAGATCCTGAAA
GCTCCCAAGTTTGATCTTGGAAAATTGATGGAGGTTCACGGNGATTACTC
GGAAGATGTTGGTGTGAAGGTGGATAGGCCANCTGATGANCCCATGCCTG
AAGCANCAACTGAAGTGATTGGAGCTTGAACGTGAATGAAGAAATTTTTC
TA
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