CF417578
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_RAT (40S ribosomal protein S3a OS=Rattus norvegicus GN=Rps3a PE=1 SV=2) HSP 1 Score: 108.227 bits (269), Expect = 3.101e-41 Identity = 54/105 (51.43%), Postives = 73/105 (69.52%), Query Frame = 3 Query: 285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKVDR 578 NQ+++T YAQ Q+ QIR+KM EIM + DLK +V I + IG++IEKA SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ ++ G KV+R Sbjct: 148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVER 252 HSP 2 Score: 78.5666 bits (192), Expect = 3.101e-41 Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K L E V GK LT F GM+ T DK+ S+V+ W T+IEA+VDVKTTD + LRLFC+GFT Sbjct: 83 KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143 HSP 3 Score: 22.3274 bits (46), Expect = 3.101e-41 Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 Query: 1 KIASEGLKHXVFE 39 KIAS+GLK VFE Sbjct: 56 KIASDGLKGRVFE 68
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_MOUSE (40S ribosomal protein S3a OS=Mus musculus GN=Rps3a PE=1 SV=3) HSP 1 Score: 108.227 bits (269), Expect = 3.101e-41 Identity = 54/105 (51.43%), Postives = 73/105 (69.52%), Query Frame = 3 Query: 285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKVDR 578 NQ+++T YAQ Q+ QIR+KM EIM + DLK +V I + IG++IEKA SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ ++ G KV+R Sbjct: 148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVER 252 HSP 2 Score: 78.5666 bits (192), Expect = 3.101e-41 Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K L E V GK LT F GM+ T DK+ S+V+ W T+IEA+VDVKTTD + LRLFC+GFT Sbjct: 83 KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143 HSP 3 Score: 22.3274 bits (46), Expect = 3.101e-41 Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 Query: 1 KIASEGLKHXVFE 39 KIAS+GLK VFE Sbjct: 56 KIASDGLKGRVFE 68
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_GECJA (40S ribosomal protein S3a OS=Gecko japonicus GN=RPS3A PE=2 SV=3) HSP 1 Score: 108.227 bits (269), Expect = 3.101e-41 Identity = 54/105 (51.43%), Postives = 74/105 (70.48%), Query Frame = 3 Query: 285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKVDR 578 NQ+++T YAQ Q+ QIR+KM EIM + DLK +V I + IG+++EKA SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S ++ G KV+R Sbjct: 148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDMEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 252 HSP 2 Score: 78.5666 bits (192), Expect = 3.101e-41 Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K L E V GK LT F GM+ T DK+ S+V+ W T+IEA+VDVKTTD + LRLFC+GFT Sbjct: 83 KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143 HSP 3 Score: 22.3274 bits (46), Expect = 3.101e-41 Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 Query: 1 KIASEGLKHXVFE 39 KIAS+GLK VFE Sbjct: 56 KIASDGLKGRVFE 68
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_ORYLA (40S ribosomal protein S3a OS=Oryzias latipes GN=rps3a PE=2 SV=3) HSP 1 Score: 107.842 bits (268), Expect = 4.031e-41 Identity = 54/107 (50.47%), Postives = 73/107 (68.22%), Query Frame = 3 Query: 285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKVDR 578 NQV++T YAQ Q+ QIR+KM EIM + DLK +V I + +G++IEKA SIYPL +V++RKVK+LK PKF+LGKLME+HG+ +D G KV+R Sbjct: 148 NQVRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVER 254 HSP 2 Score: 78.5666 bits (192), Expect = 4.031e-41 Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K L E V GK LT F GM+ T DK+ S+V+ W T+IEA+VDVKTTD + LRLFC+GFT Sbjct: 83 KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143 HSP 3 Score: 22.3274 bits (46), Expect = 4.031e-41 Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 Query: 1 KIASEGLKHXVFE 39 KIAS+GLK VFE Sbjct: 56 KIASDGLKGRVFE 68
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_MALGO (40S ribosomal protein S1 OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=RPS1 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 4.659e-41 Identity = 61/121 (50.41%), Postives = 81/121 (66.94%), Query Frame = 3 Query: 258 ALDSPXRLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS----EDVGVKV-DRPXDXPMPEA 605 A+ R NQVK+T YA++ QI IR+KM E++ ++SCDL+ V I EV+GREIEK+T IYPL++VFI KVK+LK PKFD+ KL E+HG S EDVG K+ P+P+A Sbjct: 138 AIGFTRRRANQVKKTTYAKSSQIHAIRKKMFEVIQRESSSCDLREFVAKLIPEVMGREIEKSTQGIYPLKDVFIHKVKVLKRPKFDVNKLYELHGGASVVGAEDVGTKIKSGEFKEPVPQA 258 HSP 2 Score: 74.7146 bits (182), Expect = 4.659e-41 Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K L + V G+ LT F+GM+FT+DKL SLVR W +LIEA+ D++TTD + LR+F IGFT Sbjct: 82 KFQLRVDEVQGRNCLTNFYGMSFTSDKLRSLVRKWQSLIEAHQDIRTTDGYLLRVFAIGFT 142
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_XENTR (40S ribosomal protein S3a OS=Xenopus tropicalis GN=rps3a PE=2 SV=3) HSP 1 Score: 107.071 bits (266), Expect = 6.817e-41 Identity = 53/105 (50.48%), Postives = 73/105 (69.52%), Query Frame = 3 Query: 285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKVDR 578 NQ+++T YAQ Q+ QIR+KM EIM + DLK +V I + IG++IEKA SIYPL +V++RKVK+LK PKF+LGKLME+HG+ ++ G KV+R Sbjct: 148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPAGDETGAKVER 252 HSP 2 Score: 78.5666 bits (192), Expect = 6.817e-41 Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K L E V GK LT F GM+ T DK+ S+V+ W T+IEA+VDVKTTD + LRLFC+GFT Sbjct: 83 KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143 HSP 3 Score: 22.3274 bits (46), Expect = 6.817e-41 Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 Query: 1 KIASEGLKHXVFE 39 KIAS+GLK VFE Sbjct: 56 KIASDGLKGRVFE 68
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_TAEGU (40S ribosomal protein S3a OS=Taeniopygia guttata GN=RPS3A PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 6.817e-41 Identity = 53/105 (50.48%), Postives = 73/105 (69.52%), Query Frame = 3 Query: 285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKVDR 578 NQ+++T YAQ Q+ QIR+KM EIM + DLK +V I + IG++IEKA SIYPL +V++RKVK+LK PKF+LGKLME+HG+ ++ G KV+R Sbjct: 148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGTKVER 252 HSP 2 Score: 78.5666 bits (192), Expect = 6.817e-41 Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K L E V GK LT F GM+ T DK+ S+V+ W T+IEA+VDVKTTD + LRLFC+GFT Sbjct: 83 KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143 HSP 3 Score: 22.3274 bits (46), Expect = 6.817e-41 Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 Query: 1 KIASEGLKHXVFE 39 KIAS+GLK VFE Sbjct: 56 KIASDGLKGRVFE 68
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_EIMTE (40S ribosomal protein S3a OS=Eimeria tenella PE=2 SV=3) HSP 1 Score: 106.686 bits (265), Expect = 8.864e-41 Identity = 53/105 (50.48%), Postives = 73/105 (69.52%), Query Frame = 3 Query: 285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKVDR 578 NQ+++T YAQ Q+ QIR+KM EIM + DLK +V I + IG++IEKA SIYPL +V++RKVK+LK PKF+LGKLME+HG+ ++ G KV+R Sbjct: 148 NQIRKTSYAQHQQVRQIRKKMMEIMTGEFQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGAKVER 252 HSP 2 Score: 78.5666 bits (192), Expect = 8.864e-41 Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K L E V GK LT F GM+ T DK+ S+V+ W T+IEA+VDVKTTD + LRLFC+GFT Sbjct: 83 KFKLITEDVQGKNCLTNFHGMDLTRDKMFSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143 HSP 3 Score: 22.3274 bits (46), Expect = 8.864e-41 Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 Query: 1 KIASEGLKHXVFE 39 KIAS+GLK VFE Sbjct: 56 KIASDGLKGRVFE 68
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_TETNG (40S ribosomal protein S3a OS=Tetraodon nigroviridis GN=rps3a PE=3 SV=3) HSP 1 Score: 108.227 bits (269), Expect = 1.030e-40 Identity = 55/110 (50.00%), Postives = 74/110 (67.27%), Query Frame = 3 Query: 276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKVDR 578 R NQ+++T YAQ Q+ QIR+KM EIM + DLK +V I + IG++IEKA SIYPL +V++RKVK+LK PKF+LGKLME+HG+ +D G KV+R Sbjct: 145 RRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGTAAKATGDDTGAKVER 254 HSP 2 Score: 78.5666 bits (192), Expect = 1.030e-40 Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K L E V GK LT F GM+ T DK+ S+V+ W T+IEA+VDVKTTD + LRLFC+GFT Sbjct: 83 KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_SOLSE (40S ribosomal protein S3a OS=Solea senegalensis GN=rps3a PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.152e-40 Identity = 53/107 (49.53%), Postives = 73/107 (68.22%), Query Frame = 3 Query: 285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKVDR 578 NQ+++T YAQ Q+ QIR+KM EIM + DLK +V I + +G++IEKA SIYPL +V++RKVK+LK PKF+LGKLME+HG+ +D G KV+R Sbjct: 148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGTGTATKATGDDTGAKVER 254 HSP 2 Score: 78.5666 bits (192), Expect = 1.152e-40 Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K L E V GK LT F GM+ T DK+ S+V+ W T+IEA+VDVKTTD + LRLFC+GFT Sbjct: 83 KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143 HSP 3 Score: 21.1718 bits (43), Expect = 1.152e-40 Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 1 Query: 1 KIASEGLKHXVFE 39 +IAS+GLK VFE Sbjct: 56 RIASDGLKGRVFE 68 The following BLAST results are available for this feature:
BLAST of CF417578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 158
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417578 ID=CF417578; Name=CF417578; organism=Citrus sinensis; type=EST; length=652bpback to top |