CF417578

Overview
NameCF417578
Unique NameCF417578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3AA_XENLA (40S ribosomal protein S3a-A OS=Xenopus laevis GN=rps3a-A PE=2 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.152e-40
Identity = 53/105 (50.48%), Postives = 73/105 (69.52%), Query Frame = 3 
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKVDR 578
            NQ+++T YAQ  Q+ QIR+KM EIM     + DLK +V   I + IG++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+         ++ G KV+R
Sbjct:  148 NQIRKTSYAQHQQVRQIRKKMFEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGTGKPAGDETGAKVER 252

HSP 2 Score: 78.5666 bits (192), Expect = 1.152e-40
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L  E V GK  LT F GM+ T DK+ S+V+ W T+IEA+VDVKTTD + LRLFC+GFT
Sbjct:   83 KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143

HSP 3 Score: 22.3274 bits (46), Expect = 1.152e-40
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:    1 KIASEGLKHXVFE 39
            KIAS+GLK  VFE
Sbjct:   56 KIASDGLKGRVFE 68
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_PLAVI (40S ribosomal protein S3a OS=Plasmodium vivax GN=PVX_095080 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.750e-40
Identity = 63/115 (54.78%), Postives = 75/115 (65.22%), Query Frame = 3 
Query:  282 PNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPXDXPMPEAXTEVIGA 626
            PNQ K TCYAQT QI +IR+KM +IM A A+   LK LV+ FI E IG+E+EK    IYPLQNV IRKVKILK PK D+ KLME+H D  ED G  V      P  +  T ++ A
Sbjct:  147 PNQTKTTCYAQTSQIKKIRKKMVDIMNAEASKVMLKDLVKKFIPESIGKEVEKQCKKIYPLQNVLIRKVKILKRPKLDISKLMELHTDSKEDAGKNV---KSLPESKEATNILSA 258

HSP 2 Score: 68.1662 bits (165), Expect = 1.750e-40
Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            KI L  + +  K   T F G++ T DKL SL+R  +TLIE Y DVKT DN+ LR+FCI FT
Sbjct:   83 KIKLCCDHIINKDCYTDFCGLSITRDKLCSLIRKGYTLIEGYTDVKTIDNYQLRMFCIAFT 143
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_SUBDO (40S ribosomal protein S3a OS=Suberites domuncula PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.951e-40
Identity = 46/90 (51.11%), Postives = 65/90 (72.22%), Query Frame = 3 
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 545
            R PNQ+K+T YA++ Q   IR+KM ++M    +  DLK  V   I + IG++IEK   SIYPL +VF+RKVK+LK PKFD+G+LM++HG+
Sbjct:  144 RQPNQIKKTSYAKSSQCRSIRKKMVDVMTREVSQIDLKETVNKLIPDSIGKDIEKKCQSIYPLHDVFVRKVKVLKKPKFDIGRLMDLHGE 233

HSP 2 Score: 82.4185 bits (202), Expect = 1.951e-40
Identity = 40/61 (65.57%), Postives = 45/61 (73.77%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L +E + GK VLT F GM  TTDKL +LV+ W TLIEA VDVKTTD + LRLFCIGFT
Sbjct:   82 KFRLISEDIQGKNVLTNFHGMTMTTDKLRALVKKWQTLIEANVDVKTTDGYLLRLFCIGFT 142

HSP 3 Score: 21.557 bits (44), Expect = 1.951e-40
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:    1 KIASEGLKHXVFE 39
            K+AS+GLK  VFE
Sbjct:   55 KLASDGLKGRVFE 67
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_PLAKH (40S ribosomal protein S3a OS=Plasmodium knowlesi (strain H) GN=PKH_081740 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.280e-40
Identity = 63/115 (54.78%), Postives = 75/115 (65.22%), Query Frame = 3 
Query:  282 PNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPXDXPMPEAXTEVIGA 626
            PNQ K TCYAQT QI +IR+KM +IM A A+   LK LV+ FI E IG+E+EK    IYPLQNV IRKVKILK PK D+ KLME+H D  ED G  V      P  +  T ++ A
Sbjct:  147 PNQTKTTCYAQTSQIKKIRKKMVDIMNAEASKVLLKDLVKKFIPESIGKEVEKQCKKIYPLQNVLIRKVKILKRPKLDISKLMELHTDSKEDAGKNV---KSLPESKEATNILSA 258

HSP 2 Score: 68.1662 bits (165), Expect = 2.280e-40
Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            KI L  + +  K   T F G++ T DKL SL+R  +TLIE Y DVKT DN+ LR+FCI FT
Sbjct:   83 KIKLCCDHIINKDCYTDFCGLSITRDKLCSLIRKGYTLIEGYTDVKTIDNYQLRMFCIAFT 143
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_PARBP (40S ribosomal protein S1 OS=Paracoccidioides brasiliensis (strain Pb03) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.281e-40
Identity = 61/102 (59.80%), Postives = 75/102 (73.53%), Query Frame = 3 
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDR 578
            R PNQ+K+T YAQ+ QI  IR+KM EI+   A +  L  L +  I EVIGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G KV+R
Sbjct:  145 RRPNQIKKTTYAQSSQIRAIRKKMVEIIQREAGTRSLAQLTK-LIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVER 245

HSP 2 Score: 74.7146 bits (182), Expect = 2.281e-40
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + V GK  LT F G++FT+DKL SLVR W TLIEA V VKTTD++ LRLF I FT
Sbjct:   83 KVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFT 143
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_PARBD (40S ribosomal protein S1 OS=Paracoccidioides brasiliensis (strain Pb18) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.281e-40
Identity = 61/102 (59.80%), Postives = 75/102 (73.53%), Query Frame = 3 
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDR 578
            R PNQ+K+T YAQ+ QI  IR+KM EI+   A +  L  L +  I EVIGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G KV+R
Sbjct:  145 RRPNQIKKTTYAQSSQIRAIRKKMVEIIQREAGTRSLAQLTK-LIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVER 245

HSP 2 Score: 74.7146 bits (182), Expect = 2.281e-40
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + V GK  LT F G++FT+DKL SLVR W TLIEA V VKTTD++ LRLF I FT
Sbjct:   83 KVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFT 143
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_PARBA (40S ribosomal protein S1 OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.281e-40
Identity = 61/102 (59.80%), Postives = 75/102 (73.53%), Query Frame = 3 
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDR 578
            R PNQ+K+T YAQ+ QI  IR+KM EI+   A +  L  L +  I EVIGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G KV+R
Sbjct:  145 RRPNQIKKTTYAQSSQIRAIRKKMVEIIQREAGTRSLAQLTK-LIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVER 245

HSP 2 Score: 74.7146 bits (182), Expect = 2.281e-40
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + V GK  LT F G++FT+DKL SLVR W TLIEA V VKTTD++ LRLF I FT
Sbjct:   83 KVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFT 143
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_DANRE (40S ribosomal protein S3a OS=Danio rerio GN=rps3a PE=2 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 2.532e-40
Identity = 53/108 (49.07%), Postives = 72/108 (66.67%), Query Frame = 3 
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE----------DVGVKVDR 578
            NQ+++T YAQ  Q+ QIR+KM EIM     + DLK +V   I + +G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+             D G KV+R
Sbjct:  148 NQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGSTSAAAKPAEGDTGAKVER 255

HSP 2 Score: 78.9518 bits (193), Expect = 2.532e-40
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L  E V GK  LT F GM+ T DK+ S+V+ W T+IEA+VDVKTTD + LRLFC+GFT
Sbjct:   83 KFKLVTEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143

HSP 3 Score: 21.1718 bits (43), Expect = 2.532e-40
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:    1 KIASEGLKHXVFE 39
            +IAS+GLK  VFE
Sbjct:   56 RIASDGLKGRVFE 68
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_BIPLU (40S ribosomal protein S3a OS=Biphyllus lunatus PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.532e-40
Identity = 50/113 (44.25%), Postives = 74/113 (65.49%), Query Frame = 3 
Query:  294 KRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-------DVGVKVDRP--XDXPMPEA 605
            ++TCYAQ  Q+  IR+KM EI+    +  DLK +V   + + I ++IEKA+  IYPL +V+IRKVK+LK P+F+L KL+E+HGD  +       + G KVD+P   + P+ EA
Sbjct:  154 RKTCYAQHTQVRSIRKKMVEIITRDISGSDLKEVVNKLLPDSIAKDIEKASQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDSGKGGSGEPGEAGSKVDKPEGYEPPVQEA 266

HSP 2 Score: 79.337 bits (194), Expect = 2.532e-40
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L AE V G+ VLT F GM+ TTDKL S+V+ W +LIEA  DVKTTD + LR+FCIGFT
Sbjct:   86 KFRLIAEDVQGRNVLTNFHGMDLTTDKLRSMVKKWQSLIEASADVKTTDGYLLRVFCIGFT 146

HSP 3 Score: 27.335 bits (59), Expect = 2.532e-40
Identity = 12/13 (92.31%), Postives = 12/13 (92.31%), Query Frame = 1 
Query:    1 KIASEGLKHXVFE 39
            KIASEGLKH VFE
Sbjct:   56 KIASEGLKHRVFE 68
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3AB_XENLA (40S ribosomal protein S3a-B OS=Xenopus laevis GN=rps3a-B PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.533e-40
Identity = 53/105 (50.48%), Postives = 73/105 (69.52%), Query Frame = 3 
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKVDR 578
            NQ+++T YAQ  Q+ QIR+KM EIM     + DLK +V   I + IG++IEKA  SIYPL +V+ RKVK+LK PKF+LGKLME+HG+        +++ G KV+R
Sbjct:  148 NQIRKTSYAQHQQVRQIRKKMMEIMSREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYARKVKMLKKPKFELGKLMELHGEGGGSGKPAADETGAKVER 252

HSP 2 Score: 78.5666 bits (192), Expect = 2.533e-40
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L  E V GK  LT F GM+ T DK+ S+V+ W T+IEA+VDVKTTD + LRLFC+GFT
Sbjct:   83 KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143

HSP 3 Score: 22.3274 bits (46), Expect = 2.533e-40
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:    1 KIASEGLKHXVFE 39
            KIAS+GLK  VFE
Sbjct:   56 KIASDGLKGRVFE 68
The following BLAST results are available for this feature:
BLAST of CF417578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
RS3AA_XENLA1.152e-4050.4840S ribosomal protein S3a-A OS=Xenopus laevis GN=r... [more]
RS3A_PLAVI1.750e-4054.7840S ribosomal protein S3a OS=Plasmodium vivax GN=P... [more]
RS3A_SUBDO1.951e-4051.1140S ribosomal protein S3a OS=Suberites domuncula P... [more]
RS3A_PLAKH2.280e-4054.7840S ribosomal protein S3a OS=Plasmodium knowlesi (... [more]
RS3A_PARBP2.281e-4059.8040S ribosomal protein S1 OS=Paracoccidioides brasi... [more]
RS3A_PARBD2.281e-4059.8040S ribosomal protein S1 OS=Paracoccidioides brasi... [more]
RS3A_PARBA2.281e-4059.8040S ribosomal protein S1 OS=Paracoccidioides brasi... [more]
RS3A_DANRE2.532e-4049.0740S ribosomal protein S3a OS=Danio rerio GN=rps3a ... [more]
RS3A_BIPLU2.532e-4044.2540S ribosomal protein S3a OS=Biphyllus lunatus PE=... [more]
RS3AB_XENLA2.533e-4050.4840S ribosomal protein S3a-B OS=Xenopus laevis GN=r... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-508 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417578 ID=CF417578; Name=CF417578; organism=Citrus sinensis; type=EST; length=652bp
AAGATTGCATCAGAAGGTCTCAAGCACNNAGTGTTTGAGAGTATCACTAG
CGTGATCTTCTCAACTGAAGAAGAGCATGCTTACAGTGAAGATCNCACTG
ACAGCTGAANATGTCCNAGGGAAGANTGTTTTGACTANCTTCTGGGGCAT
GAATTTCACTACAGACAAGCTGANGTCTTTGGTTAGGAANTGGCATACCT
TGATTGAAGCTTACGTGGATGTCAAGACCACTGATAACTTCACATTGAGG
TTGTTCTGCATTGGATTCACCAANGAGACTTCCAAACCAGGTTAAGAGGA
CTTGCTACGCACAGACCANCCAGATTACACAGATTCGCCGCAAGATGAGG
GAGATCATGGTTGCTCANGCAGCATCTTGTGATCTTAAGAGCTTGGTCGA
ANAGTTCATTGCTGAAGTGATTGGAAGAGAGATTGAGAAGGCAACGTCAA
GCATATACCCCTTACAAAATGTGTTCATTCGCAAAGTGAAGATCCTGAAA
GCTCCCAAGTTTGATCTTGGAAAATTGATGGAGGTTCACGGNGATTACTC
GGAAGATGTTGGTGTGAAGGTGGATAGGCCANCTGATGANCCCATGCCTG
AAGCANCAACTGAAGTGATTGGAGCTTGAACGTGAATGAAGAAATTTTTC
TA
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