CF417578

Overview
NameCF417578
Unique NameCF417578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_OPHHA (40S ribosomal protein S3a OS=Ophiophagus hannah GN=RPS3A PE=2 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 7.236e-40
Identity = 53/105 (50.48%), Postives = 73/105 (69.52%), Query Frame = 3 
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKVDR 578
            NQ+++T YAQ  Q+ QIR+KM EIM     + DLK +V   I + IG++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+         ++ G KV+R
Sbjct:  148 NQIRKTSYAQHQQVRQIRKKMVEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGSGKPSGDETGAKVER 252

HSP 2 Score: 75.8702 bits (185), Expect = 7.236e-40
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L  E V GK  L  F GM+ T DK+ S+V+ W T+IEA++DVKTTD + LRLFC+GFT
Sbjct:   83 KFKLITEDVQGKNCLINFHGMDLTRDKMCSMVKKWQTMIEAHIDVKTTDGYLLRLFCVGFT 143

HSP 3 Score: 22.3274 bits (46), Expect = 7.236e-40
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:    1 KIASEGLKHXVFE 39
            KIAS+GLK  VFE
Sbjct:   56 KIASDGLKGRVFE 68
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_TRIIF (40S ribosomal protein S3a OS=Triatoma infestans PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.236e-40
Identity = 48/98 (48.98%), Postives = 70/98 (71.43%), Query Frame = 3 
Query:  294 KRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD--YSEDVGVKVDRP 581
            ++TCYAQ  Q+ QIRRKM + + +  ++ DL+ +V   I + I ++IEKA   IYPL +V+IRKVK+LK P+F+L KL+E+HGD   S++ G KV RP
Sbjct:  154 RKTCYAQHTQVRQIRRKMVDNITSSISNSDLRVVVNKLIPDSIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDGKGSDEPGAKVSRP 251

HSP 2 Score: 78.9518 bits (193), Expect = 7.236e-40
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L AE V  + VLT F GM+ TTDKL S+V+ W TLIEA VDV+TTD + LR+FCIGFT
Sbjct:   86 KFRLIAEDVQARNVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVRTTDGYLLRVFCIGFT 146

HSP 3 Score: 26.5646 bits (57), Expect = 7.236e-40
Identity = 15/29 (51.72%), Postives = 19/29 (65.52%), Query Frame = 1 
Query:    1 KIASEGLKHXVFE-SITSVIFSTEEEHAY 84
            KIASEGLK  VFE S+  +   T+ E +Y
Sbjct:   56 KIASEGLKGRVFEVSLADLQNDTDAERSY 84
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_CANDC (40S ribosomal protein S1 OS=Candida dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 8.563e-40
Identity = 56/100 (56.00%), Postives = 74/100 (74.00%), Query Frame = 3 
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKV 572
            R PNQ+K+T YAQ+ ++ ++R+KM EIM    ++C L  L    I EVIGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G KV
Sbjct:  145 RQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244

HSP 2 Score: 71.633 bits (174), Expect = 8.563e-40
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            KI L  + V GK +LT F G++FT+DKL SLVR W +L+EA V VKT+D++ LR+F I FT
Sbjct:   83 KIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFT 143
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_CANAW (40S ribosomal protein S1 OS=Candida albicans (strain WO-1) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 8.563e-40
Identity = 56/100 (56.00%), Postives = 74/100 (74.00%), Query Frame = 3 
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKV 572
            R PNQ+K+T YAQ+ ++ ++R+KM EIM    ++C L  L    I EVIGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G KV
Sbjct:  145 RQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244

HSP 2 Score: 71.633 bits (174), Expect = 8.563e-40
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            KI L  + V GK +LT F G++FT+DKL SLVR W +L+EA V VKT+D++ LR+F I FT
Sbjct:   83 KIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFT 143
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_CANAL (40S ribosomal protein S1 OS=Candida albicans GN=RPS1 PE=3 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 8.563e-40
Identity = 56/100 (56.00%), Postives = 74/100 (74.00%), Query Frame = 3 
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKV 572
            R PNQ+K+T YAQ+ ++ ++R+KM EIM    ++C L  L    I EVIGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G KV
Sbjct:  145 RQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244

HSP 2 Score: 71.633 bits (174), Expect = 8.563e-40
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            KI L  + V GK +LT F G++FT+DKL SLVR W +L+EA V VKT+D++ LR+F I FT
Sbjct:   83 KIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFT 143
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_AJEDS (40S ribosomal protein S1 OS=Ajellomyces dermatitidis (strain SLH14081) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.116e-39
Identity = 59/102 (57.84%), Postives = 76/102 (74.51%), Query Frame = 3 
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDR 578
            R PNQ+K+T YA++ QI  IR+K+ EI+   A++  L  L +  I EVIGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G KV+R
Sbjct:  145 RRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLTK-LIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVER 245

HSP 2 Score: 74.7146 bits (182), Expect = 1.116e-39
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + V GK  LT F G++FT+DKL SLVR W TLIEA V VKTTD++ LRLF I FT
Sbjct:   83 KVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFT 143
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_AJEDR (40S ribosomal protein S1 OS=Ajellomyces dermatitidis (strain ER-3) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.116e-39
Identity = 59/102 (57.84%), Postives = 76/102 (74.51%), Query Frame = 3 
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDR 578
            R PNQ+K+T YA++ QI  IR+K+ EI+   A++  L  L +  I EVIGREIEKAT  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G KV+R
Sbjct:  145 RRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLTK-LIPEVIGREIEKATHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVER 245

HSP 2 Score: 74.7146 bits (182), Expect = 1.116e-39
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + V GK  LT F G++FT+DKL SLVR W TLIEA V VKTTD++ LRLF I FT
Sbjct:   83 KVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFT 143
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_AJECN (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.116e-39
Identity = 59/102 (57.84%), Postives = 76/102 (74.51%), Query Frame = 3 
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDR 578
            R PNQ+K+T YA++ QI  IR+K+ EI+   A+S  L  L +  I EVIGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G KV+R
Sbjct:  145 RRPNQIKKTTYARSSQIRAIRKKITEIIQREASSRTLAQLTK-LIPEVIGREIEKSTHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVER 245

HSP 2 Score: 74.7146 bits (182), Expect = 1.116e-39
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + V GK  LT F G++FT+DKL SLVR W TLIEA V VKTTD++ LRLF I FT
Sbjct:   83 KVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFT 143
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A2_SCHPO (40S ribosomal protein S1-B OS=Schizosaccharomyces pombe GN=rps102 PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.894e-39
Identity = 59/99 (59.60%), Postives = 76/99 (76.77%), Query Frame = 3 
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKV 572
            R  NQVK+T YAQ+ QI  IR+KM +++    +SC ++ LV+  I EVIGREIE+AT SI+PLQNV +RKVKILKAPK D  KL+E+HG+ S+DVG KV
Sbjct:  145 RRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLLELHGE-SQDVGTKV 242

HSP 2 Score: 66.2402 bits (160), Expect = 1.894e-39
Identity = 38/79 (48.10%), Postives = 47/79 (59.49%), Query Frame = 2 
Query:   35 LRVSLA*SSQLKKSMLTVKIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            L VSLA   Q  +     K+ L  E + GK  LT F G++ T+DKL SLVR W T IEA   +KTTD +  R+F IGFT
Sbjct:   66 LEVSLA-DLQKDEEHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVIGFT 143
[Close]
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_PICGU (40S ribosomal protein S1 OS=Pichia guilliermondii GN=RPS1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.467e-39
Identity = 58/100 (58.00%), Postives = 74/100 (74.00%), Query Frame = 3 
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKV 572
            R PNQVK+T YAQ+ ++ +IR+KM EIM    ++  L  L +  I EVIGREIEK+T +I+PLQNV IRKVK+LK PKFDLG LM +HG+  SE+ G KV
Sbjct:  145 RQPNQVKKTTYAQSSKLREIRKKMMEIMQREVSNSTLAQLTQKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGNLMSLHGEGASEEKGKKV 244

HSP 2 Score: 69.707 bits (169), Expect = 2.467e-39
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 2 
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + V GK +LT F G++FT+DKL SLVR W +L+EA V VKT D++ LR+F I FT
Sbjct:   83 KVKLRVDEVQGKNLLTNFHGIDFTSDKLRSLVRKWQSLVEANVTVKTADDYYLRVFAIAFT 143
The following BLAST results are available for this feature:
BLAST of CF417578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
RS3A_OPHHA7.236e-4050.4840S ribosomal protein S3a OS=Ophiophagus hannah GN... [more]
RS3A_TRIIF7.236e-4048.9840S ribosomal protein S3a OS=Triatoma infestans PE... [more]
RS3A_CANDC8.563e-4056.0040S ribosomal protein S1 OS=Candida dubliniensis (... [more]
RS3A_CANAW8.563e-4056.0040S ribosomal protein S1 OS=Candida albicans (stra... [more]
RS3A_CANAL8.563e-4056.0040S ribosomal protein S1 OS=Candida albicans GN=RP... [more]
RS3A_AJEDS1.116e-3957.8440S ribosomal protein S1 OS=Ajellomyces dermatitid... [more]
RS3A_AJEDR1.116e-3957.8440S ribosomal protein S1 OS=Ajellomyces dermatitid... [more]
RS3A_AJECN1.116e-3957.8440S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]
RS3A2_SCHPO1.894e-3959.6040S ribosomal protein S1-B OS=Schizosaccharomyces ... [more]
RS3A_PICGU2.467e-3958.0040S ribosomal protein S1 OS=Pichia guilliermondii ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-508 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417578 ID=CF417578; Name=CF417578; organism=Citrus sinensis; type=EST; length=652bp
AAGATTGCATCAGAAGGTCTCAAGCACNNAGTGTTTGAGAGTATCACTAG
CGTGATCTTCTCAACTGAAGAAGAGCATGCTTACAGTGAAGATCNCACTG
ACAGCTGAANATGTCCNAGGGAAGANTGTTTTGACTANCTTCTGGGGCAT
GAATTTCACTACAGACAAGCTGANGTCTTTGGTTAGGAANTGGCATACCT
TGATTGAAGCTTACGTGGATGTCAAGACCACTGATAACTTCACATTGAGG
TTGTTCTGCATTGGATTCACCAANGAGACTTCCAAACCAGGTTAAGAGGA
CTTGCTACGCACAGACCANCCAGATTACACAGATTCGCCGCAAGATGAGG
GAGATCATGGTTGCTCANGCAGCATCTTGTGATCTTAAGAGCTTGGTCGA
ANAGTTCATTGCTGAAGTGATTGGAAGAGAGATTGAGAAGGCAACGTCAA
GCATATACCCCTTACAAAATGTGTTCATTCGCAAAGTGAAGATCCTGAAA
GCTCCCAAGTTTGATCTTGGAAAATTGATGGAGGTTCACGGNGATTACTC
GGAAGATGTTGGTGTGAAGGTGGATAGGCCANCTGATGANCCCATGCCTG
AAGCANCAACTGAAGTGATTGGAGCTTGAACGTGAATGAAGAAATTTTTC
TA
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