CF417578

Overview
NameCF417578
Unique NameCF417578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_AJECG (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.468e-39
Identity = 58/102 (56.86%), Postives = 76/102 (74.51%), Query Frame = 3
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDR 578
            R PNQ+K+T YA++ QI  IR+K+ EI+   A++  L  L +  I EVIGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G KV+R
Sbjct:  145 RRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLTK-LIPEVIGREIEKSTHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVER 245          

HSP 2 Score: 74.7146 bits (182), Expect = 2.468e-39
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + V GK  LT F G++FT+DKL SLVR W TLIEA V VKTTD++ LRLF I FT
Sbjct:   83 KVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFT 143          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_TRIAD (40S ribosomal protein S3a OS=Trichoplax adhaerens GN=TRIADDRAFT_36460 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.544e-39
Identity = 52/115 (45.22%), Postives = 73/115 (63.48%), Query Frame = 3
Query:  258 ALDSPXRLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKVDRPXDXP 593
            A+    + PNQ+K+T YA+T Q   IR+KM +I+    ++ DLK +V   I + IG++IEK+  SIYPL +V+IRKVK+LK PK D  KL+E+HG+    S D G  V R    P
Sbjct:  138 AIGFTKKRPNQIKKTAYAKTSQCRSIRKKMTDIITREVSAIDLKEVVNRLIPDSIGKDIEKSCQSIYPLHDVYIRKVKVLKKPKLDTAKLLELHGEGVASSGDAGSAVRRDGYEP 252          

HSP 2 Score: 78.5666 bits (192), Expect = 4.544e-39
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L AE V GK VLT F GM+ T+DKL SLV+ W TLIEA++D KTTD + LR F IGFT
Sbjct:   82 KFRLIAEEVLGKSVLTNFHGMSMTSDKLKSLVKKWQTLIEAHIDAKTTDGYLLRFFAIGFT 142          

HSP 3 Score: 22.3274 bits (46), Expect = 4.544e-39
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1
Query:    1 KIASEGLKHXVFE 39
            KIAS+GLK  VFE
Sbjct:   55 KIASDGLKGRVFE 67          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_USTMA (40S ribosomal protein S1 OS=Ustilago maydis GN=RPS1 PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.456e-39
Identity = 56/99 (56.57%), Postives = 71/99 (71.72%), Query Frame = 3
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY----SEDVGVK 569
            NQVK+  YA++  I  IR+KM EI+   A SCDL+  V   I EVIGRE+EKAT  I+PL++V++RKVK+LKAPK DL KL+EVHG      +ED GVK
Sbjct:  147 NQVKKNTYAKSSHIRAIRQKMFEIVQREANSCDLREFVAKLIPEVIGREVEKATQGIFPLKDVYVRKVKVLKAPKDDLNKLLEVHGGAAIAGAEDAGVK 245          

HSP 2 Score: 73.1738 bits (178), Expect = 5.456e-39
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L  + + G+  LT F+GM+FT+DKL SLVR W +LIEA+ DVKTTD + LR+F I FT
Sbjct:   82 KFKLKVDGIQGRTCLTNFYGMDFTSDKLRSLVRKWQSLIEAHQDVKTTDGYLLRVFVIAFT 142          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_AJECH (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain H143) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 5.458e-39
Identity = 57/102 (55.88%), Postives = 76/102 (74.51%), Query Frame = 3
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDR 578
            R PNQ+K+T YA++ QI  IR+K+ EI+   A++  L  L +  I EVIGREI+K+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G KV+R
Sbjct:  145 RRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLTK-LIPEVIGREIDKSTHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVER 245          

HSP 2 Score: 74.7146 bits (182), Expect = 5.458e-39
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + V GK  LT F G++FT+DKL SLVR W TLIEA V VKTTD++ LRLF I FT
Sbjct:   83 KVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFT 143          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_LODEL (40S ribosomal protein S1 OS=Lodderomyces elongisporus GN=RPS1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 7.116e-39
Identity = 53/99 (53.54%), Postives = 71/99 (71.72%), Query Frame = 3
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKV 572
            R  NQVK+T YAQ+ ++ ++R+KM EI+    ++  L  L    I EVI REIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ SE+ G KV
Sbjct:  132 RQANQVKKTTYAQSSKLREVRKKMVEILTREVSNSTLSQLTSKLIPEVISREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEASEEKGKKV 230          

HSP 2 Score: 72.4034 bits (176), Expect = 7.116e-39
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L A+ V G  +LT F GM+FT+DKL SLVR W +L+EA V VKT D++ LR+F I FT
Sbjct:   70 KVKLRADEVQGNKILTNFHGMDFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFAIAFT 130          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_CANTT (40S ribosomal protein S1 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 9.262e-39
Identity = 55/100 (55.00%), Postives = 73/100 (73.00%), Query Frame = 3
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKV 572
            R  NQ+K+T YAQ+ ++ ++R+KM EIM    ++C L  L    I EVIGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G KV
Sbjct:  145 RQANQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          

HSP 2 Score: 71.2478 bits (173), Expect = 9.262e-39
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            KI L  + V GK +LT F G++FT+DKL SLVR W +L+EA V VKT D++ LR+F I FT
Sbjct:   83 KIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFAIAFT 143          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_SCHJY (40S ribosomal protein S1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=rps1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.266e-39
Identity = 55/96 (57.29%), Postives = 73/96 (76.04%), Query Frame = 3
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKV 572
            NQ+K+T YAQ+ QI  IR+KM +++   A  C ++ LV+  I E+IGREIEKAT  I+PLQNVF+RKVKILK+PK D  KL+E HG+ ++DVG KV
Sbjct:  148 NQIKKTTYAQSSQIRAIRQKMFQVIQNQATGCSMRELVQKLIPEIIGREIEKATGGIFPLQNVFVRKVKILKSPKLDAQKLLEQHGE-AQDVGTKV 242          

HSP 2 Score: 67.0106 bits (162), Expect = 9.266e-39
Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + V GK  LT F GM+ T+DKL SLVR W T IEA   +KTTD +  R+F IGFT
Sbjct:   83 KVKLRVDDVQGKACLTTFNGMSMTSDKLRSLVRKWQTTIEADQTIKTTDGYVCRIFVIGFT 143          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_ARTSF (40S ribosomal protein S3a OS=Artemia sanfranciscana PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.206e-38
Identity = 48/110 (43.64%), Postives = 68/110 (61.82%), Query Frame = 3
Query:  294 KRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD--------YSEDVGVKVDRPXDXPMP 599
            ++TCYAQ  Q+  IR+KM EI+    +S DLK  V   I + I ++IEK+  SIYP+  V+IRKVK+LK PKFD+GKL+++HG+          +  GV + RP     P
Sbjct:  154 RKTCYAQHTQVRAIRKKMTEIITKEISSGDLKEAVSKLIPDSIAKDIEKSCHSIYPIHEVYIRKVKVLKKPKFDMGKLLDMHGEGAVTKRVTTEDGTGVVISRPEGYEPP 263          

HSP 2 Score: 83.5741 bits (205), Expect = 1.206e-38
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETSK 286
            K  L AE V G+ +LT F GM+FTTDKL SLV+ W TLIE  VDVKTTD++ LR+FCIGFT +  +
Sbjct:   86 KFRLIAEEVQGRYLLTNFHGMDFTTDKLRSLVKKWQTLIECSVDVKTTDSYLLRVFCIGFTQKDQR 151          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_APLCA (40S ribosomal protein S3a OS=Aplysia californica GN=RPS3A PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.206e-38
Identity = 54/106 (50.94%), Postives = 71/106 (66.98%), Query Frame = 3
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS--------EDVGVKVDR 578
            NQVK+TCYAQ  Q+  IR+KM EI+    +S D+K +V   I + IG++IEK+   IYPL +V I KVK+LK PKFD+GKLME+HG+ S         + G KVDR
Sbjct:  148 NQVKKTCYAQHAQVKAIRKKMVEIVSREVSSNDMKEVVNKLIPDSIGKDIEKSCQGIYPLHDVLIHKVKVLKKPKFDVGKLMELHGEGSTTTSKGVTSEGGEKVDR 253          

HSP 2 Score: 76.2554 bits (186), Expect = 1.206e-38
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K  L AE V G+ VLT F GM+ T DKL S+V+ W TLIEA VDVKTTD + LR+F IGFT
Sbjct:   83 KFKLIAEEVQGRNVLTNFSGMSLTRDKLCSMVKKWQTLIEANVDVKTTDGYLLRVFAIGFT 143          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_CRYHO (40S ribosomal protein S3a OS=Cryptosporidium hominis GN=Chro.40360 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.206e-38
Identity = 58/101 (57.43%), Postives = 71/101 (70.30%), Query Frame = 3
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVH--GDYSEDVGVKV 572
            R+ +QVK TCYAQT QI QIR+KM EI+ A A    L+ LV+ FI E IG+EIEKA   I+PLQ+VFIRKVK+L  P FD+ +LME H   D  E+ G KV
Sbjct:  145 RMADQVKSTCYAQTSQIRQIRKKMVEIITAEAEGTTLRDLVKKFIPESIGKEIEKACRHIFPLQHVFIRKVKVLSKPSFDVSRLMESHVGADGVEEKGTKV 245          

HSP 2 Score: 71.2478 bits (173), Expect = 1.206e-38
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            KI L  E + G+  LT F GM+ T DKL SL+R + TLIEA+ +VKT+D + LRLFCI FT
Sbjct:   83 KIKLQCEDIQGRTCLTEFHGMDMTRDKLCSLIRKYQTLIEAHCNVKTSDGYVLRLFCIAFT 143          
The following BLAST results are available for this feature:
BLAST of CF417578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
RS3A_AJECG2.468e-3956.8640S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]
RS3A_TRIAD4.544e-3945.2240S ribosomal protein S3a OS=Trichoplax adhaerens ... [more]
RS3A_USTMA5.456e-3956.5740S ribosomal protein S1 OS=Ustilago maydis GN=RPS... [more]
RS3A_AJECH5.458e-3955.8840S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]
RS3A_LODEL7.116e-3953.5440S ribosomal protein S1 OS=Lodderomyces elongispo... [more]
RS3A_CANTT9.262e-3955.0040S ribosomal protein S1 OS=Candida tropicalis (st... [more]
RS3A_SCHJY9.266e-3957.2940S ribosomal protein S1 OS=Schizosaccharomyces ja... [more]
RS3A_ARTSF1.206e-3843.6440S ribosomal protein S3a OS=Artemia sanfranciscan... [more]
RS3A_APLCA1.206e-3850.9440S ribosomal protein S3a OS=Aplysia californica G... [more]
RS3A_CRYHO1.206e-3857.4340S ribosomal protein S3a OS=Cryptosporidium homin... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-508 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417578 ID=CF417578; Name=CF417578; organism=Citrus sinensis; type=EST; length=652bp
AAGATTGCATCAGAAGGTCTCAAGCACNNAGTGTTTGAGAGTATCACTAG
CGTGATCTTCTCAACTGAAGAAGAGCATGCTTACAGTGAAGATCNCACTG
ACAGCTGAANATGTCCNAGGGAAGANTGTTTTGACTANCTTCTGGGGCAT
GAATTTCACTACAGACAAGCTGANGTCTTTGGTTAGGAANTGGCATACCT
TGATTGAAGCTTACGTGGATGTCAAGACCACTGATAACTTCACATTGAGG
TTGTTCTGCATTGGATTCACCAANGAGACTTCCAAACCAGGTTAAGAGGA
CTTGCTACGCACAGACCANCCAGATTACACAGATTCGCCGCAAGATGAGG
GAGATCATGGTTGCTCANGCAGCATCTTGTGATCTTAAGAGCTTGGTCGA
ANAGTTCATTGCTGAAGTGATTGGAAGAGAGATTGAGAAGGCAACGTCAA
GCATATACCCCTTACAAAATGTGTTCATTCGCAAAGTGAAGATCCTGAAA
GCTCCCAAGTTTGATCTTGGAAAATTGATGGAGGTTCACGGNGATTACTC
GGAAGATGTTGGTGTGAAGGTGGATAGGCCANCTGATGANCCCATGCCTG
AAGCANCAACTGAAGTGATTGGAGCTTGAACGTGAATGAAGAAATTTTTC
TA
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