CF417578
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_AJECG (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=RPS1 PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.468e-39 Identity = 58/102 (56.86%), Postives = 76/102 (74.51%), Query Frame = 3 Query: 276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDR 578 R PNQ+K+T YA++ QI IR+K+ EI+ A++ L L + I EVIGREIEK+T IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G KV+R Sbjct: 145 RRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLTK-LIPEVIGREIEKSTHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVER 245 HSP 2 Score: 74.7146 bits (182), Expect = 2.468e-39 Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K+ L + V GK LT F G++FT+DKL SLVR W TLIEA V VKTTD++ LRLF I FT Sbjct: 83 KVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFT 143
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_TRIAD (40S ribosomal protein S3a OS=Trichoplax adhaerens GN=TRIADDRAFT_36460 PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 4.544e-39 Identity = 52/115 (45.22%), Postives = 73/115 (63.48%), Query Frame = 3 Query: 258 ALDSPXRLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKVDRPXDXP 593 A+ + PNQ+K+T YA+T Q IR+KM +I+ ++ DLK +V I + IG++IEK+ SIYPL +V+IRKVK+LK PK D KL+E+HG+ S D G V R P Sbjct: 138 AIGFTKKRPNQIKKTAYAKTSQCRSIRKKMTDIITREVSAIDLKEVVNRLIPDSIGKDIEKSCQSIYPLHDVYIRKVKVLKKPKLDTAKLLELHGEGVASSGDAGSAVRRDGYEP 252 HSP 2 Score: 78.5666 bits (192), Expect = 4.544e-39 Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K L AE V GK VLT F GM+ T+DKL SLV+ W TLIEA++D KTTD + LR F IGFT Sbjct: 82 KFRLIAEEVLGKSVLTNFHGMSMTSDKLKSLVKKWQTLIEAHIDAKTTDGYLLRFFAIGFT 142 HSP 3 Score: 22.3274 bits (46), Expect = 4.544e-39 Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 Query: 1 KIASEGLKHXVFE 39 KIAS+GLK VFE Sbjct: 55 KIASDGLKGRVFE 67
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_USTMA (40S ribosomal protein S1 OS=Ustilago maydis GN=RPS1 PE=3 SV=2) HSP 1 Score: 107.842 bits (268), Expect = 5.456e-39 Identity = 56/99 (56.57%), Postives = 71/99 (71.72%), Query Frame = 3 Query: 285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY----SEDVGVK 569 NQVK+ YA++ I IR+KM EI+ A SCDL+ V I EVIGRE+EKAT I+PL++V++RKVK+LKAPK DL KL+EVHG +ED GVK Sbjct: 147 NQVKKNTYAKSSHIRAIRQKMFEIVQREANSCDLREFVAKLIPEVIGREVEKATQGIFPLKDVYVRKVKVLKAPKDDLNKLLEVHGGAAIAGAEDAGVK 245 HSP 2 Score: 73.1738 bits (178), Expect = 5.456e-39 Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K L + + G+ LT F+GM+FT+DKL SLVR W +LIEA+ DVKTTD + LR+F I FT Sbjct: 82 KFKLKVDGIQGRTCLTNFYGMDFTSDKLRSLVRKWQSLIEAHQDVKTTDGYLLRVFVIAFT 142
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_AJECH (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain H143) GN=RPS1 PE=3 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 5.458e-39 Identity = 57/102 (55.88%), Postives = 76/102 (74.51%), Query Frame = 3 Query: 276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDR 578 R PNQ+K+T YA++ QI IR+K+ EI+ A++ L L + I EVIGREI+K+T IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G KV+R Sbjct: 145 RRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLTK-LIPEVIGREIDKSTHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVER 245 HSP 2 Score: 74.7146 bits (182), Expect = 5.458e-39 Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K+ L + V GK LT F G++FT+DKL SLVR W TLIEA V VKTTD++ LRLF I FT Sbjct: 83 KVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFT 143
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_LODEL (40S ribosomal protein S1 OS=Lodderomyces elongisporus GN=RPS1 PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 7.116e-39 Identity = 53/99 (53.54%), Postives = 71/99 (71.72%), Query Frame = 3 Query: 276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKV 572 R NQVK+T YAQ+ ++ ++R+KM EI+ ++ L L I EVI REIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ SE+ G KV Sbjct: 132 RQANQVKKTTYAQSSKLREVRKKMVEILTREVSNSTLSQLTSKLIPEVISREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEASEEKGKKV 230 HSP 2 Score: 72.4034 bits (176), Expect = 7.116e-39 Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K+ L A+ V G +LT F GM+FT+DKL SLVR W +L+EA V VKT D++ LR+F I FT Sbjct: 70 KVKLRADEVQGNKILTNFHGMDFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFAIAFT 130
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_CANTT (40S ribosomal protein S1 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=RPS1 PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 9.262e-39 Identity = 55/100 (55.00%), Postives = 73/100 (73.00%), Query Frame = 3 Query: 276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKV 572 R NQ+K+T YAQ+ ++ ++R+KM EIM ++C L L I EVIGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G KV Sbjct: 145 RQANQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244 HSP 2 Score: 71.2478 bits (173), Expect = 9.262e-39 Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 KI L + V GK +LT F G++FT+DKL SLVR W +L+EA V VKT D++ LR+F I FT Sbjct: 83 KIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFAIAFT 143
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_SCHJY (40S ribosomal protein S1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=rps1 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 9.266e-39 Identity = 55/96 (57.29%), Postives = 73/96 (76.04%), Query Frame = 3 Query: 285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKV 572 NQ+K+T YAQ+ QI IR+KM +++ A C ++ LV+ I E+IGREIEKAT I+PLQNVF+RKVKILK+PK D KL+E HG+ ++DVG KV Sbjct: 148 NQIKKTTYAQSSQIRAIRQKMFQVIQNQATGCSMRELVQKLIPEIIGREIEKATGGIFPLQNVFVRKVKILKSPKLDAQKLLEQHGE-AQDVGTKV 242 HSP 2 Score: 67.0106 bits (162), Expect = 9.266e-39 Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K+ L + V GK LT F GM+ T+DKL SLVR W T IEA +KTTD + R+F IGFT Sbjct: 83 KVKLRVDDVQGKACLTTFNGMSMTSDKLRSLVRKWQTTIEADQTIKTTDGYVCRIFVIGFT 143
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_ARTSF (40S ribosomal protein S3a OS=Artemia sanfranciscana PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.206e-38 Identity = 48/110 (43.64%), Postives = 68/110 (61.82%), Query Frame = 3 Query: 294 KRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD--------YSEDVGVKVDRPXDXPMP 599 ++TCYAQ Q+ IR+KM EI+ +S DLK V I + I ++IEK+ SIYP+ V+IRKVK+LK PKFD+GKL+++HG+ + GV + RP P Sbjct: 154 RKTCYAQHTQVRAIRKKMTEIITKEISSGDLKEAVSKLIPDSIAKDIEKSCHSIYPIHEVYIRKVKVLKKPKFDMGKLLDMHGEGAVTKRVTTEDGTGVVISRPEGYEPP 263 HSP 2 Score: 83.5741 bits (205), Expect = 1.206e-38 Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETSK 286 K L AE V G+ +LT F GM+FTTDKL SLV+ W TLIE VDVKTTD++ LR+FCIGFT + + Sbjct: 86 KFRLIAEEVQGRYLLTNFHGMDFTTDKLRSLVKKWQTLIECSVDVKTTDSYLLRVFCIGFTQKDQR 151
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_APLCA (40S ribosomal protein S3a OS=Aplysia californica GN=RPS3A PE=3 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 1.206e-38 Identity = 54/106 (50.94%), Postives = 71/106 (66.98%), Query Frame = 3 Query: 285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS--------EDVGVKVDR 578 NQVK+TCYAQ Q+ IR+KM EI+ +S D+K +V I + IG++IEK+ IYPL +V I KVK+LK PKFD+GKLME+HG+ S + G KVDR Sbjct: 148 NQVKKTCYAQHAQVKAIRKKMVEIVSREVSSNDMKEVVNKLIPDSIGKDIEKSCQGIYPLHDVLIHKVKVLKKPKFDVGKLMELHGEGSTTTSKGVTSEGGEKVDR 253 HSP 2 Score: 76.2554 bits (186), Expect = 1.206e-38 Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K L AE V G+ VLT F GM+ T DKL S+V+ W TLIEA VDVKTTD + LR+F IGFT Sbjct: 83 KFKLIAEEVQGRNVLTNFSGMSLTRDKLCSMVKKWQTLIEANVDVKTTDGYLLRVFAIGFT 143
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_CRYHO (40S ribosomal protein S3a OS=Cryptosporidium hominis GN=Chro.40360 PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.206e-38 Identity = 58/101 (57.43%), Postives = 71/101 (70.30%), Query Frame = 3 Query: 276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVH--GDYSEDVGVKV 572 R+ +QVK TCYAQT QI QIR+KM EI+ A A L+ LV+ FI E IG+EIEKA I+PLQ+VFIRKVK+L P FD+ +LME H D E+ G KV Sbjct: 145 RMADQVKSTCYAQTSQIRQIRKKMVEIITAEAEGTTLRDLVKKFIPESIGKEIEKACRHIFPLQHVFIRKVKVLSKPSFDVSRLMESHVGADGVEEKGTKV 245 HSP 2 Score: 71.2478 bits (173), Expect = 1.206e-38 Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 KI L E + G+ LT F GM+ T DKL SL+R + TLIEA+ +VKT+D + LRLFCI FT Sbjct: 83 KIKLQCEDIQGRTCLTEFHGMDMTRDKLCSLIRKYQTLIEAHCNVKTSDGYVLRLFCIAFT 143 The following BLAST results are available for this feature:
BLAST of CF417578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 158
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417578 ID=CF417578; Name=CF417578; organism=Citrus sinensis; type=EST; length=652bpback to top |