CF417578
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_BABBO (40S ribosomal protein S3a OS=Babesia bovis GN=BBOV_III001480 PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.206e-38 Identity = 51/96 (53.12%), Postives = 69/96 (71.88%), Query Frame = 3 Query: 276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 563 R P Q+K TCY ++ + +RRKM E+M A++ ++ +V+ I E IG+EIEKA S++PLQNV IRK+K+LK PKFDL KLMEVH D SE+ G Sbjct: 145 RRPGQLKSTCYIRSSRTRVVRRKMIEVMQREASTTSMREVVKKIIPESIGKEIEKACKSVFPLQNVLIRKIKVLKKPKFDLTKLMEVHTDISEETG 240 HSP 2 Score: 72.4034 bits (176), Expect = 1.206e-38 Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETSKPG 292 KI L E + G+ LT F G + T DKL SL+R ++LIEA+ DVKTTD +TLR+FCIG+T +PG Sbjct: 83 KIKLCCEDIQGRNCLTNFHGTSVTRDKLCSLIRKNYSLIEAFTDVKTTDGYTLRMFCIGYTKR--RPG 148
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_BRUMA (40S ribosomal protein S3a OS=Brugia malayi GN=Bm1_27225 PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.298e-38 Identity = 52/107 (48.60%), Postives = 71/107 (66.36%), Query Frame = 3 Query: 288 QVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKVDRPXDXPMP 599 Q+K+T YA++ +I QIR KM E M DLK + + + IG++IEKA S IYPLQ+V IRKVKILK PKF++G+LME+H D ++ G K++RP D P Sbjct: 146 QLKKTSYAKSSKIRQIRAKMVEYMQKEVQGSDLKDVCHKLVPDSIGKDIEKACSYIYPLQDVCIRKVKILKKPKFEIGRLMEMHTDVSTFTSAEGEKIERPDDYEPP 252 HSP 2 Score: 77.411 bits (189), Expect = 1.298e-38 Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETSK 286 K+ L E V G+ LT F GM T DKL S+V+ WHTLIEA V VKT+D + LRLFCIGFT + ++ Sbjct: 80 KMRLICEDVQGRTCLTNFHGMRLTRDKLCSIVKKWHTLIEANVAVKTSDGYLLRLFCIGFTKKNAR 145 HSP 3 Score: 23.0978 bits (48), Expect = 1.298e-38 Identity = 12/25 (48.00%), Postives = 15/25 (60.00%), Query Frame = 1 Query: 1 KIASEGLKHXVFESITSVIFSTEEE 75 KIASEGLK V+E + + E E Sbjct: 53 KIASEGLKGRVYEVSLGDLNNAESE 77
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A1_SCHPO (40S ribosomal protein S1-A OS=Schizosaccharomyces pombe GN=rps101 PE=2 SV=2) HSP 1 Score: 115.161 bits (287), Expect = 1.573e-38 Identity = 60/99 (60.61%), Postives = 75/99 (75.76%), Query Frame = 3 Query: 276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKV 572 R NQVK+T YAQ+ QI I +KM +++ A C +K LV+ I EVIGR IEKAT++IYPLQNVF+RKVKILKAPK D KL+E+HG+ S+DVG KV Sbjct: 145 RRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLLELHGE-SQDVGSKV 242 HSP 2 Score: 64.3142 bits (155), Expect = 1.573e-38 Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K+ L E + GK LT F G + T+DKL SLVR W + IEA +KTTD + R+F IGFT Sbjct: 83 KVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVIGFT 143
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_PLAF7 (40S ribosomal protein S3a OS=Plasmodium falciparum (isolate 3D7) GN=MAL3P7.35 PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 2.047e-38 Identity = 59/97 (60.82%), Postives = 69/97 (71.13%), Query Frame = 3 Query: 285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVD 575 NQ K TCYAQT QI +IR+KM +IM A A+ LK LV+ FI E IG+EIEK IYPLQNV IRKVKILK PK D+ KLME+H D E+ G V+ Sbjct: 148 NQTKSTCYAQTSQIKKIRKKMVDIMTAEASKVLLKDLVKKFIPESIGKEIEKQCKKIYPLQNVLIRKVKILKRPKLDISKLMELHTDPKEESGKNVN 244 HSP 2 Score: 65.4698 bits (158), Expect = 2.047e-38 Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 KI L+ + + + T F G++ T DKL SL+R +TLIE + DVKT DN+ LR+FCI FT Sbjct: 83 KIKLSCDHIINRDCYTDFCGLSITRDKLCSLIRKGYTLIEGHTDVKTLDNYHLRMFCIAFT 143
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_ANOGA (40S ribosomal protein S3a OS=Anopheles gambiae GN=RpS3A PE=2 SV=3) HSP 1 Score: 94.7449 bits (234), Expect = 2.190e-38 Identity = 51/111 (45.95%), Postives = 65/111 (58.56%), Query Frame = 3 Query: 294 KRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDV---------GVKVDRPXDXPMP 599 ++TCYAQ QI IR KM I+ S DLK +VE + + I ++IEKA +YPL +V+IRKVK+LK P+FDL LME+HGD GV VDRP P Sbjct: 154 RKTCYAQHSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELHGDGGGKAAEVSTGAASGVVVDRPEGYEPP 264 HSP 2 Score: 82.4185 bits (202), Expect = 2.190e-38 Identity = 41/65 (63.08%), Postives = 46/65 (70.77%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETS 283 K L AE V G+ VLT F GM TTDKL S+V+ W TLIE VDVKTTD F LR+FCIGFT + S Sbjct: 86 KFKLVAESVNGRDVLTNFHGMALTTDKLRSMVKKWQTLIECSVDVKTTDGFMLRVFCIGFTIKDS 150 HSP 3 Score: 22.3274 bits (46), Expect = 2.190e-38 Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 Query: 1 KIASEGLKHXVFE 39 KIAS+GLK VFE Sbjct: 56 KIASDGLKGRVFE 68
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A2_DEBHA (40S ribosomal protein S1-B OS=Debaryomyces hansenii GN=RPS1B PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.668e-38 Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 3 Query: 276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKV 572 R NQ+++T YAQ+ ++ ++R+KM EIM ++C L L I EVIGREIEK+T +I PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G KV Sbjct: 145 RQANQIRKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244 HSP 2 Score: 72.7886 bits (177), Expect = 2.668e-38 Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K+ L + V GK +LT F G++FTTDKL SLVR W +L+EA V VKT+D++ LR+F I FT Sbjct: 83 KVKLRVDEVQGKNLLTNFHGIDFTTDKLRSLVRKWQSLVEANVTVKTSDDYVLRIFAIAFT 143
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A1_DEBHA (40S ribosomal protein S1-A OS=Debaryomyces hansenii GN=RPS1A PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.668e-38 Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 3 Query: 276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKV 572 R NQ+++T YAQ+ ++ ++R+KM EIM ++C L L I EVIGREIEK+T +I PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G KV Sbjct: 145 RQANQIRKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244 HSP 2 Score: 72.7886 bits (177), Expect = 2.668e-38 Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271 K+ L + V GK +LT F G++FTTDKL SLVR W +L+EA V VKT+D++ LR+F I FT Sbjct: 83 KVKLRVDEVQGKNLLTNFHGIDFTTDKLRSLVRKWQSLVEANVTVKTSDDYVLRIFAIAFT 143
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_AEDAE (40S ribosomal protein S3a OS=Aedes aegypti GN=AAEL005901 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 3.700e-38 Identity = 49/112 (43.75%), Postives = 68/112 (60.71%), Query Frame = 3 Query: 294 KRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD----------YSEDVGVKVDRPXDXPMP 599 ++TCYAQ QI +IRRKM I+ S DLK +V + + I ++IEK+ IYPL +V+IRKVK+LK P+FDL L+E+HGD + + GV +DRP P Sbjct: 154 RKTCYAQHSQIKEIRRKMTTIITRDVTSSDLKEVVNKLLPDSIAKDIEKSCQGIYPLHDVYIRKVKVLKKPRFDLANLLELHGDGGGKGAEVSTGAAEGGVTIDRPEGYEPP 265 HSP 2 Score: 79.7221 bits (195), Expect = 3.700e-38 Identity = 39/65 (60.00%), Postives = 46/65 (70.77%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETS 283 K L AE V G+ VL F GM+ TTDKL S+V+ W TLIE VDVKTTD + LR+FCIGFT + S Sbjct: 86 KFKLIAEDVHGRNVLCNFHGMDLTTDKLRSMVKKWQTLIECSVDVKTTDGYLLRVFCIGFTIKDS 150 HSP 3 Score: 22.7126 bits (47), Expect = 3.700e-38 Identity = 12/29 (41.38%), Postives = 19/29 (65.52%), Query Frame = 1 Query: 1 KIASEGLKHXVFE-SITSVIFSTEEEHAY 84 +IAS+GLK VFE S+ + T+ E ++ Sbjct: 56 RIASDGLKGRVFEVSLADLQNDTDAERSF 84
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_CAEBR (40S ribosomal protein S3a OS=Caenorhabditis briggsae GN=rps-1 PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 3.705e-38 Identity = 54/108 (50.00%), Postives = 70/108 (64.81%), Query Frame = 3 Query: 285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGV---KVDRPXDXPMP 599 NQVK+T Y +T +I +IR +M + CDLK +V I + IG++IEK S +YPLQ V+IRKVKI+K PK DLG+L ++HGD S VG KVDRP D P Sbjct: 146 NQVKKTSYTKTSKIRKIRSEMISCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKIDLGRLHDLHGD-SITVGADGEKVDRPDDYEPP 252 HSP 2 Score: 73.9442 bits (180), Expect = 3.705e-38 Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETS 283 K L AE V GK VLT F M+ T DKL S+V+ WHTLIEA VKTTD +TLR+F I FT +++ Sbjct: 81 KFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSA 145 HSP 3 Score: 23.483 bits (49), Expect = 3.705e-38 Identity = 11/13 (84.62%), Postives = 11/13 (84.62%), Query Frame = 1 Query: 1 KIASEGLKHXVFE 39 KIASEGLK VFE Sbjct: 54 KIASEGLKGRVFE 66
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_COCP7 (40S ribosomal protein S1 OS=Coccidioides posadasii (strain C735) GN=RPS1 PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 5.902e-38 Identity = 58/98 (59.18%), Postives = 72/98 (73.47%), Query Frame = 3 Query: 288 QVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDR 578 QVK+T YA++ QI IR+KM EI+ A+S L L + + EVIGREIEKAT IYPLQNV IRKVK+LK PKFDLG L+ +HG+ S +D G KV+R Sbjct: 149 QVKKTTYARSSQIRAIRKKMVEIIQREASSRTLTQLTK-LVPEVIGREIEKATRGIYPLQNVHIRKVKLLKQPKFDLGGLLALHGEASTDDKGQKVER 245 HSP 2 Score: 74.3294 bits (181), Expect = 5.902e-38 Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 2 Query: 89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETS 283 KI L + V GK LT F GM+FT+DKL SLVR W +LIEA V VKTTD++ +RLF I FT S Sbjct: 83 KIKLRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLVRLFAIAFTKRRS 147 The following BLAST results are available for this feature:
BLAST of CF417578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 158
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417578 ID=CF417578; Name=CF417578; organism=Citrus sinensis; type=EST; length=652bpback to top |