CF417578

Overview
NameCF417578
Unique NameCF417578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_BABBO (40S ribosomal protein S3a OS=Babesia bovis GN=BBOV_III001480 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.206e-38
Identity = 51/96 (53.12%), Postives = 69/96 (71.88%), Query Frame = 3
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 563
            R P Q+K TCY ++ +   +RRKM E+M   A++  ++ +V+  I E IG+EIEKA  S++PLQNV IRK+K+LK PKFDL KLMEVH D SE+ G
Sbjct:  145 RRPGQLKSTCYIRSSRTRVVRRKMIEVMQREASTTSMREVVKKIIPESIGKEIEKACKSVFPLQNVLIRKIKVLKKPKFDLTKLMEVHTDISEETG 240          

HSP 2 Score: 72.4034 bits (176), Expect = 1.206e-38
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETSKPG 292
            KI L  E + G+  LT F G + T DKL SL+R  ++LIEA+ DVKTTD +TLR+FCIG+T    +PG
Sbjct:   83 KIKLCCEDIQGRNCLTNFHGTSVTRDKLCSLIRKNYSLIEAFTDVKTTDGYTLRMFCIGYTKR--RPG 148          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_BRUMA (40S ribosomal protein S3a OS=Brugia malayi GN=Bm1_27225 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.298e-38
Identity = 52/107 (48.60%), Postives = 71/107 (66.36%), Query Frame = 3
Query:  288 QVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKVDRPXDXPMP 599
            Q+K+T YA++ +I QIR KM E M       DLK +    + + IG++IEKA S IYPLQ+V IRKVKILK PKF++G+LME+H D   ++   G K++RP D   P
Sbjct:  146 QLKKTSYAKSSKIRQIRAKMVEYMQKEVQGSDLKDVCHKLVPDSIGKDIEKACSYIYPLQDVCIRKVKILKKPKFEIGRLMEMHTDVSTFTSAEGEKIERPDDYEPP 252          

HSP 2 Score: 77.411 bits (189), Expect = 1.298e-38
Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETSK 286
            K+ L  E V G+  LT F GM  T DKL S+V+ WHTLIEA V VKT+D + LRLFCIGFT + ++
Sbjct:   80 KMRLICEDVQGRTCLTNFHGMRLTRDKLCSIVKKWHTLIEANVAVKTSDGYLLRLFCIGFTKKNAR 145          

HSP 3 Score: 23.0978 bits (48), Expect = 1.298e-38
Identity = 12/25 (48.00%), Postives = 15/25 (60.00%), Query Frame = 1
Query:    1 KIASEGLKHXVFESITSVIFSTEEE 75
            KIASEGLK  V+E     + + E E
Sbjct:   53 KIASEGLKGRVYEVSLGDLNNAESE 77          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A1_SCHPO (40S ribosomal protein S1-A OS=Schizosaccharomyces pombe GN=rps101 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.573e-38
Identity = 60/99 (60.61%), Postives = 75/99 (75.76%), Query Frame = 3
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKV 572
            R  NQVK+T YAQ+ QI  I +KM +++   A  C +K LV+  I EVIGR IEKAT++IYPLQNVF+RKVKILKAPK D  KL+E+HG+ S+DVG KV
Sbjct:  145 RRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLLELHGE-SQDVGSKV 242          

HSP 2 Score: 64.3142 bits (155), Expect = 1.573e-38
Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  E + GK  LT F G + T+DKL SLVR W + IEA   +KTTD +  R+F IGFT
Sbjct:   83 KVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVIGFT 143          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_PLAF7 (40S ribosomal protein S3a OS=Plasmodium falciparum (isolate 3D7) GN=MAL3P7.35 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.047e-38
Identity = 59/97 (60.82%), Postives = 69/97 (71.13%), Query Frame = 3
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVD 575
            NQ K TCYAQT QI +IR+KM +IM A A+   LK LV+ FI E IG+EIEK    IYPLQNV IRKVKILK PK D+ KLME+H D  E+ G  V+
Sbjct:  148 NQTKSTCYAQTSQIKKIRKKMVDIMTAEASKVLLKDLVKKFIPESIGKEIEKQCKKIYPLQNVLIRKVKILKRPKLDISKLMELHTDPKEESGKNVN 244          

HSP 2 Score: 65.4698 bits (158), Expect = 2.047e-38
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            KI L+ + +  +   T F G++ T DKL SL+R  +TLIE + DVKT DN+ LR+FCI FT
Sbjct:   83 KIKLSCDHIINRDCYTDFCGLSITRDKLCSLIRKGYTLIEGHTDVKTLDNYHLRMFCIAFT 143          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_ANOGA (40S ribosomal protein S3a OS=Anopheles gambiae GN=RpS3A PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 2.190e-38
Identity = 51/111 (45.95%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  294 KRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDV---------GVKVDRPXDXPMP 599
            ++TCYAQ  QI  IR KM  I+     S DLK +VE  + + I ++IEKA   +YPL +V+IRKVK+LK P+FDL  LME+HGD              GV VDRP     P
Sbjct:  154 RKTCYAQHSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELHGDGGGKAAEVSTGAASGVVVDRPEGYEPP 264          

HSP 2 Score: 82.4185 bits (202), Expect = 2.190e-38
Identity = 41/65 (63.08%), Postives = 46/65 (70.77%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETS 283
            K  L AE V G+ VLT F GM  TTDKL S+V+ W TLIE  VDVKTTD F LR+FCIGFT + S
Sbjct:   86 KFKLVAESVNGRDVLTNFHGMALTTDKLRSMVKKWQTLIECSVDVKTTDGFMLRVFCIGFTIKDS 150          

HSP 3 Score: 22.3274 bits (46), Expect = 2.190e-38
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1
Query:    1 KIASEGLKHXVFE 39
            KIAS+GLK  VFE
Sbjct:   56 KIASDGLKGRVFE 68          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A2_DEBHA (40S ribosomal protein S1-B OS=Debaryomyces hansenii GN=RPS1B PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.668e-38
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKV 572
            R  NQ+++T YAQ+ ++ ++R+KM EIM    ++C L  L    I EVIGREIEK+T +I PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G KV
Sbjct:  145 RQANQIRKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          

HSP 2 Score: 72.7886 bits (177), Expect = 2.668e-38
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + V GK +LT F G++FTTDKL SLVR W +L+EA V VKT+D++ LR+F I FT
Sbjct:   83 KVKLRVDEVQGKNLLTNFHGIDFTTDKLRSLVRKWQSLVEANVTVKTSDDYVLRIFAIAFT 143          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A1_DEBHA (40S ribosomal protein S1-A OS=Debaryomyces hansenii GN=RPS1A PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.668e-38
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:  276 RLPNQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKV 572
            R  NQ+++T YAQ+ ++ ++R+KM EIM    ++C L  L    I EVIGREIEK+T +I PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G KV
Sbjct:  145 RQANQIRKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          

HSP 2 Score: 72.7886 bits (177), Expect = 2.668e-38
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFT 271
            K+ L  + V GK +LT F G++FTTDKL SLVR W +L+EA V VKT+D++ LR+F I FT
Sbjct:   83 KVKLRVDEVQGKNLLTNFHGIDFTTDKLRSLVRKWQSLVEANVTVKTSDDYVLRIFAIAFT 143          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_AEDAE (40S ribosomal protein S3a OS=Aedes aegypti GN=AAEL005901 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.700e-38
Identity = 49/112 (43.75%), Postives = 68/112 (60.71%), Query Frame = 3
Query:  294 KRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD----------YSEDVGVKVDRPXDXPMP 599
            ++TCYAQ  QI +IRRKM  I+     S DLK +V   + + I ++IEK+   IYPL +V+IRKVK+LK P+FDL  L+E+HGD           + + GV +DRP     P
Sbjct:  154 RKTCYAQHSQIKEIRRKMTTIITRDVTSSDLKEVVNKLLPDSIAKDIEKSCQGIYPLHDVYIRKVKVLKKPRFDLANLLELHGDGGGKGAEVSTGAAEGGVTIDRPEGYEPP 265          

HSP 2 Score: 79.7221 bits (195), Expect = 3.700e-38
Identity = 39/65 (60.00%), Postives = 46/65 (70.77%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETS 283
            K  L AE V G+ VL  F GM+ TTDKL S+V+ W TLIE  VDVKTTD + LR+FCIGFT + S
Sbjct:   86 KFKLIAEDVHGRNVLCNFHGMDLTTDKLRSMVKKWQTLIECSVDVKTTDGYLLRVFCIGFTIKDS 150          

HSP 3 Score: 22.7126 bits (47), Expect = 3.700e-38
Identity = 12/29 (41.38%), Postives = 19/29 (65.52%), Query Frame = 1
Query:    1 KIASEGLKHXVFE-SITSVIFSTEEEHAY 84
            +IAS+GLK  VFE S+  +   T+ E ++
Sbjct:   56 RIASDGLKGRVFEVSLADLQNDTDAERSF 84          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_CAEBR (40S ribosomal protein S3a OS=Caenorhabditis briggsae GN=rps-1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.705e-38
Identity = 54/108 (50.00%), Postives = 70/108 (64.81%), Query Frame = 3
Query:  285 NQVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGV---KVDRPXDXPMP 599
            NQVK+T Y +T +I +IR +M   +      CDLK +V   I + IG++IEK  S +YPLQ V+IRKVKI+K PK DLG+L ++HGD S  VG    KVDRP D   P
Sbjct:  146 NQVKKTSYTKTSKIRKIRSEMISCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKIDLGRLHDLHGD-SITVGADGEKVDRPDDYEPP 252          

HSP 2 Score: 73.9442 bits (180), Expect = 3.705e-38
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETS 283
            K  L AE V GK VLT F  M+ T DKL S+V+ WHTLIEA   VKTTD +TLR+F I FT +++
Sbjct:   81 KFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSA 145          

HSP 3 Score: 23.483 bits (49), Expect = 3.705e-38
Identity = 11/13 (84.62%), Postives = 11/13 (84.62%), Query Frame = 1
Query:    1 KIASEGLKHXVFE 39
            KIASEGLK  VFE
Sbjct:   54 KIASEGLKGRVFE 66          
BLAST of CF417578 vs. ExPASy Swiss-Prot
Match: RS3A_COCP7 (40S ribosomal protein S1 OS=Coccidioides posadasii (strain C735) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.902e-38
Identity = 58/98 (59.18%), Postives = 72/98 (73.47%), Query Frame = 3
Query:  288 QVKRTCYAQTXQITQIRRKMREIMVAXAASCDLKSLVEXFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDR 578
            QVK+T YA++ QI  IR+KM EI+   A+S  L  L +  + EVIGREIEKAT  IYPLQNV IRKVK+LK PKFDLG L+ +HG+ S +D G KV+R
Sbjct:  149 QVKKTTYARSSQIRAIRKKMVEIIQREASSRTLTQLTK-LVPEVIGREIEKATRGIYPLQNVHIRKVKLLKQPKFDLGGLLALHGEASTDDKGQKVER 245          

HSP 2 Score: 74.3294 bits (181), Expect = 5.902e-38
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 2
Query:   89 KIXLTAEXVXGKXVLTXFWGMNFTTDKLXSLVRXWHTLIEAYVDVKTTDNFTLRLFCIGFTXETS 283
            KI L  + V GK  LT F GM+FT+DKL SLVR W +LIEA V VKTTD++ +RLF I FT   S
Sbjct:   83 KIKLRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLVRLFAIAFTKRRS 147          
The following BLAST results are available for this feature:
BLAST of CF417578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
RS3A_BABBO1.206e-3853.1340S ribosomal protein S3a OS=Babesia bovis GN=BBOV... [more]
RS3A_BRUMA1.298e-3848.6040S ribosomal protein S3a OS=Brugia malayi GN=Bm1_... [more]
RS3A1_SCHPO1.573e-3860.6140S ribosomal protein S1-A OS=Schizosaccharomyces ... [more]
RS3A_PLAF72.047e-3860.8240S ribosomal protein S3a OS=Plasmodium falciparum... [more]
RS3A_ANOGA2.190e-3845.9540S ribosomal protein S3a OS=Anopheles gambiae GN=... [more]
RS3A2_DEBHA2.668e-3853.0040S ribosomal protein S1-B OS=Debaryomyces hanseni... [more]
RS3A1_DEBHA2.668e-3853.0040S ribosomal protein S1-A OS=Debaryomyces hanseni... [more]
RS3A_AEDAE3.700e-3843.7540S ribosomal protein S3a OS=Aedes aegypti GN=AAEL... [more]
RS3A_CAEBR3.705e-3850.0040S ribosomal protein S3a OS=Caenorhabditis briggs... [more]
RS3A_COCP75.902e-3859.1840S ribosomal protein S1 OS=Coccidioides posadasii... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-508 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417578 ID=CF417578; Name=CF417578; organism=Citrus sinensis; type=EST; length=652bp
AAGATTGCATCAGAAGGTCTCAAGCACNNAGTGTTTGAGAGTATCACTAG
CGTGATCTTCTCAACTGAAGAAGAGCATGCTTACAGTGAAGATCNCACTG
ACAGCTGAANATGTCCNAGGGAAGANTGTTTTGACTANCTTCTGGGGCAT
GAATTTCACTACAGACAAGCTGANGTCTTTGGTTAGGAANTGGCATACCT
TGATTGAAGCTTACGTGGATGTCAAGACCACTGATAACTTCACATTGAGG
TTGTTCTGCATTGGATTCACCAANGAGACTTCCAAACCAGGTTAAGAGGA
CTTGCTACGCACAGACCANCCAGATTACACAGATTCGCCGCAAGATGAGG
GAGATCATGGTTGCTCANGCAGCATCTTGTGATCTTAAGAGCTTGGTCGA
ANAGTTCATTGCTGAAGTGATTGGAAGAGAGATTGAGAAGGCAACGTCAA
GCATATACCCCTTACAAAATGTGTTCATTCGCAAAGTGAAGATCCTGAAA
GCTCCCAAGTTTGATCTTGGAAAATTGATGGAGGTTCACGGNGATTACTC
GGAAGATGTTGGTGTGAAGGTGGATAGGCCANCTGATGANCCCATGCCTG
AAGCANCAACTGAAGTGATTGGAGCTTGAACGTGAATGAAGAAATTTTTC
TA
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