CF417579
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1) HSP 1 Score: 247.669 bits (631), Expect = 3.410e-65 Identity = 130/208 (62.50%), Postives = 154/208 (74.04%), Query Frame = 1 Query: 1 SSTSLRATPFLGQSRTTANALKDVVPMGN-------AKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600 ++ +L + F GQ+ + + ++ G AK + WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+ G P +GE D LYPGG FDPLGLA+DP FAE Sbjct: 4 ATMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAE 208
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1) HSP 1 Score: 246.128 bits (627), Expect = 9.923e-65 Identity = 126/172 (73.26%), Postives = 137/172 (79.65%), Query Frame = 1 Query: 88 AKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600 AK WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+ + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R+ G P +GE D LYPGG FDPLGLADDP FAE Sbjct: 41 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP-LGEVIDPLYPGGS-FDPLGLADDPEAFAE 209
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1) HSP 1 Score: 245.743 bits (626), Expect = 1.296e-64 Identity = 130/212 (61.32%), Postives = 155/212 (73.11%), Query Frame = 1 Query: 1 SSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL-----------WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600 ++ +L ++ F G++ +++ ++ GN K TM + WYGPDRVKYLGPFS + PSYLTGEFP DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+ + + F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R+ G P +GE D LYPGG FDPLGLA+DP FAE Sbjct: 4 TTMALSSSSFAGKAVKLSSSSSEIT--GNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFAR-NGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP-LGEVIDPLYPGGS-FDPLGLAEDPEAFAE 210
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 245.358 bits (625), Expect = 1.693e-64 Identity = 130/195 (66.67%), Postives = 143/195 (73.33%), Query Frame = 1 Query: 19 ATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600 A+ G R T K V P G + WYG DRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R+ G +GE D LYPGG FDPLGLA DP FAE Sbjct: 24 ASEVFGTGRVTMR--KTVKPTGPS-----GSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGS-FDPLGLATDPEAFAE 209
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1) HSP 1 Score: 244.973 bits (624), Expect = 2.211e-64 Identity = 130/212 (61.32%), Postives = 156/212 (73.58%), Query Frame = 1 Query: 1 SSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM-----------GNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600 S+ +L ++ F G++ + + ++ GN K TM + WYGP+RVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFK G+QIFS+GGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R+ G P +GE D LYPGG FDPLGLA+DP FAE Sbjct: 4 STMALSSSSFAGKAVKLSPSSSEIT--GNGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAE 210
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1) HSP 1 Score: 244.588 bits (623), Expect = 2.887e-64 Identity = 126/172 (73.26%), Postives = 137/172 (79.65%), Query Frame = 1 Query: 88 AKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600 AK WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTA LSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVVLMG VEG+R+ G P +GE D LYPGG FDPLGLADDP FAE Sbjct: 42 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAE 210
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1) HSP 1 Score: 244.202 bits (622), Expect = 3.771e-64 Identity = 130/209 (62.20%), Postives = 155/209 (74.16%), Query Frame = 1 Query: 1 SSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL--------WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600 ++ +L ++ F G++ ++ +V G+A+ +M WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIHGRWAMLGALGC+ PE+L + V F E VWFK G+QIFSEGGL YLGNP+LVHAQSILA+ QVVLMG VEG+R+ G P +GE D LYPGG FDPLGLADD FAE Sbjct: 4 ATMALSSSTFAGKAVKNLSSSSEV--QGDARVSMRKTAATKKVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLAR-NGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLADDAEAFAE 207
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 243.047 bits (619), Expect = 8.400e-64 Identity = 123/163 (75.46%), Postives = 135/163 (82.82%), Query Frame = 1 Query: 115 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600 WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+RI G P +GE D +YPGG FDPLGLA+DP FAE Sbjct: 58 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLAEDPEAFAE 217
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1) HSP 1 Score: 243.047 bits (619), Expect = 8.400e-64 Identity = 130/213 (61.03%), Postives = 152/213 (71.36%), Query Frame = 1 Query: 1 SSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM------------GNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600 S+ +L +T F G++ ++L G A+ TM WYGPDRV YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QVVLMG +EG+R+ G P +GE D LYPGG FDPLGLADDP FA+ Sbjct: 4 STMALSSTAFAGKAVNVPSSL-----FGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGP-LGEVVDPLYPGGT-FDPLGLADDPEAFAD 208
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 242.662 bits (618), Expect = 1.097e-63 Identity = 120/163 (73.62%), Postives = 134/163 (82.21%), Query Frame = 1 Query: 115 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600 WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAGAQIFSEGGLDYLG+P L+HAQSILA+ QV+LMG +EG+R+ G P +GE D +YPGG FDPLGLADDP FAE Sbjct: 62 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGP-LGEVTDPIYPGGN-FDPLGLADDPDAFAE 221 The following BLAST results are available for this feature:
BLAST of CF417579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417579 ID=CF417579; Name=CF417579; organism=Citrus sinensis; type=EST; length=602bpback to top |