CF417579

Overview
NameCF417579
Unique NameCF417579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10244 contig Csv1_Contig10244:195..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 3.410e-65
Identity = 130/208 (62.50%), Postives = 154/208 (74.04%), Query Frame = 1
Query:    1 SSTSLRATPFLGQSRTTANALKDVVPMGN-------AKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600
            ++ +L +  F GQ+   + +  ++   G        AK    +  WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R+ G P +GE  D LYPGG  FDPLGLA+DP  FAE
Sbjct:    4 ATMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAE 208          
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 9.923e-65
Identity = 126/172 (73.26%), Postives = 137/172 (79.65%), Query Frame = 1
Query:   88 AKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600
            AK       WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+  +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QVVLMG VEG+R+ G P +GE  D LYPGG  FDPLGLADDP  FAE
Sbjct:   41 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP-LGEVIDPLYPGGS-FDPLGLADDPEAFAE 209          
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.296e-64
Identity = 130/212 (61.32%), Postives = 155/212 (73.11%), Query Frame = 1
Query:    1 SSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL-----------WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600
            ++ +L ++ F G++   +++  ++   GN K TM   +           WYGPDRVKYLGPFS + PSYLTGEFP DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+  +   + F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+   QVVLMG VEG+R+ G P +GE  D LYPGG  FDPLGLA+DP  FAE
Sbjct:    4 TTMALSSSSFAGKAVKLSSSSSEIT--GNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFAR-NGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP-LGEVIDPLYPGGS-FDPLGLAEDPEAFAE 210          
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 1.693e-64
Identity = 130/195 (66.67%), Postives = 143/195 (73.33%), Query Frame = 1
Query:   19 ATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600
            A+   G  R T    K V P G +        WYG DRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R+ G   +GE  D LYPGG  FDPLGLA DP  FAE
Sbjct:   24 ASEVFGTGRVTMR--KTVKPTGPS-----GSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGS-FDPLGLATDPEAFAE 209          
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.211e-64
Identity = 130/212 (61.32%), Postives = 156/212 (73.58%), Query Frame = 1
Query:    1 SSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM-----------GNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600
            S+ +L ++ F G++   + +  ++   GN K TM            +  WYGP+RVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFK G+QIFS+GGLDYLGNP+LVHAQSILA+   QVVLMG VEG+R+ G P +GE  D LYPGG  FDPLGLA+DP  FAE
Sbjct:    4 STMALSSSSFAGKAVKLSPSSSEIT--GNGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAE 210          
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 2.887e-64
Identity = 126/172 (73.26%), Postives = 137/172 (79.65%), Query Frame = 1
Query:   88 AKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600
            AK       WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTA LSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QVVLMG VEG+R+ G P +GE  D LYPGG  FDPLGLADDP  FAE
Sbjct:   42 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAE 210          
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 3.771e-64
Identity = 130/209 (62.20%), Postives = 155/209 (74.16%), Query Frame = 1
Query:    1 SSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL--------WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600
            ++ +L ++ F G++    ++  +V   G+A+ +M            WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIHGRWAMLGALGC+ PE+L +   V F E VWFK G+QIFSEGGL YLGNP+LVHAQSILA+   QVVLMG VEG+R+ G P +GE  D LYPGG  FDPLGLADD   FAE
Sbjct:    4 ATMALSSSTFAGKAVKNLSSSSEV--QGDARVSMRKTAATKKVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLAR-NGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLADDAEAFAE 207          
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 8.400e-64
Identity = 123/163 (75.46%), Postives = 135/163 (82.82%), Query Frame = 1
Query:  115 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600
            WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+RI G P +GE  D +YPGG  FDPLGLA+DP  FAE
Sbjct:   58 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLAEDPEAFAE 217          
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 8.400e-64
Identity = 130/213 (61.03%), Postives = 152/213 (71.36%), Query Frame = 1
Query:    1 SSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM------------GNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600
            S+ +L +T F G++    ++L      G A+ TM                WYGPDRV YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+   QVVLMG +EG+R+ G P +GE  D LYPGG  FDPLGLADDP  FA+
Sbjct:    4 STMALSSTAFAGKAVNVPSSL-----FGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGP-LGEVVDPLYPGGT-FDPLGLADDPEAFAD 208          
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.097e-63
Identity = 120/163 (73.62%), Postives = 134/163 (82.21%), Query Frame = 1
Query:  115 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600
            WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAGAQIFSEGGLDYLG+P L+HAQSILA+   QV+LMG +EG+R+ G P +GE  D +YPGG  FDPLGLADDP  FAE
Sbjct:   62 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGP-LGEVTDPIYPGGN-FDPLGLADDPDAFAE 221          
The following BLAST results are available for this feature:
BLAST of CF417579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB22_TOBAC3.410e-6562.50Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB24_PETSP9.923e-6573.26Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_PETSP1.296e-6461.32Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_SINAL1.693e-6466.67Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_NICPL2.211e-6461.32Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB25_PETSP2.887e-6473.26Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB22_HORVU3.771e-6462.20Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2B_PINSY8.400e-6475.46Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB29_MAIZE8.400e-6461.03Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB2A_PINSY1.097e-6373.62Chlorophyll a-b binding protein type 2 member 1A, ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-509 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417579 ID=CF417579; Name=CF417579; organism=Citrus sinensis; type=EST; length=602bp
TCTAGCACTTCTCTTAGGGCAACCCCATTTCTTGGCCAGAGTAGGACAAC
TGCTAACGCTCTAAAAGATGTTGTTCCGATGGGGAATGCCAAGTACACAA
TGGGAAATGAACTGTGGTATGGGCCAGACAGGGTGAAGTACTTGGGACCC
TTTTCAGCACAGACTCCATCATACTTGACTGGAGAGTTTCCAGGTGACTA
TGGATGGGACACTGCTGGTTTGTCTGCTGATCCCGAGGCCTTTGCCAGGA
ACAGGGCTCTTGAGGTGATCCATGGCAGGTGGGCTATGCTTGGAGCACTA
GGCTGCATCACCCCTGAAGTTCTCGAGAAATGGCTTAGAGTAGACTTCAA
GGAACCGGTTTGGTTCAAAGCTGGAGCTCAGATTTTCTCAGAAGGTGGCC
TTGACTACTTGGGAAACCCCAACCTTGTTCATGCTCAAAGCATTCTGGCT
GTCCTGGGATTCCAGGTTGTCCTCATGGGGCTCGTTGAGGGTTTCCGTAT
CAATGGCCTCCCTGGTGTCGGAGAAGGAAACGACCTCTACCCTGGTGGCC
AATATTTTGATCCCCTTGGCCTTGCTGATGATCCTGTTACGTTTGCTGAA
CT
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