CF417579

Overview
NameCF417579
Unique NameCF417579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10244 contig Csv1_Contig10244:195..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.433e-63
Identity = 130/210 (61.90%), Postives = 152/210 (72.38%), Query Frame = 1
Query:    1 SSTSLRATPFLGQS--RTTANALKDVVPMGNAKYTMGN-------ELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600
            ++++++++   GQ+  R   N L   V    A+ TM          +WYGPDR KYLGPFS  TPSYLTGEFPGDYGWDTA +SADPE FA+NR LEVIH RWAMLGALGC+ PE+L K   + F E VWFKAGAQIFSEGGLDY GNPNL+HAQSILA+   QVVLMGL+EG+R+ G   +GEG D L PGG  FDPLGLADDP   AE
Sbjct:    3 TASAIQSSSLAGQTLLRPQQNELVKKVGTAQARITMRRTVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAK-NGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGG-GTLGEGLDPLLPGGA-FDPLGLADDPEACAE 209          
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 1.871e-63
Identity = 119/163 (73.01%), Postives = 134/163 (82.21%), Query Frame = 1
Query:  115 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600
            WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAGAQIFSEGGLDYLG+P L+HAQSILA+   QV+LMG +EG+R+ G P +GE  D +YPGG  FDPLGLADDP  FA+
Sbjct:   62 WYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGP-LGEVTDPIYPGGN-FDPLGLADDPDAFAD 221          
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 2.444e-63
Identity = 122/171 (71.35%), Postives = 138/171 (80.70%), Query Frame = 1
Query:   91 KYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600
            K  + +  WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSIL++   QV+LMG VEG+R+ G P +GE  D LYPGG  FDPLGLA+DP   AE
Sbjct:   40 KAPVSDSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGP-LGEIVDPLYPGGS-FDPLGLAEDPERSAE 207          
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 4.169e-63
Identity = 131/213 (61.50%), Postives = 150/213 (70.42%), Query Frame = 1
Query:    1 SSTSLRATPFLGQSRTTANALKDVVPMGNAKYTM------------GNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600
            S+ +L +T F G++    ++       G A+ TM                WYGPDRV YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLADDP  F E
Sbjct:    4 STMALSSTAFAGKAVNVPSS-----SFGEARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFGE 208          
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 4.169e-63
Identity = 126/195 (64.62%), Postives = 142/195 (72.82%), Query Frame = 1
Query:   19 ATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600
            +TP LG  R +            +K       WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E  WFKAG+QIFSEGGLDYLGN +L+HAQSILA+   QV+LMG VEG+RI G P +GE  D +YPGG  FDPL LADDP  FAE
Sbjct:    4 STPQLGVGRVSMRKTA-------SKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLALADDPEAFAE 188          
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 4.169e-63
Identity = 123/172 (71.51%), Postives = 134/172 (77.91%), Query Frame = 1
Query:   88 AKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600
            AK       WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADP  FA+NR LEVIH RW MLGALGC+ PE+  +   V F E VWFKAG+QIF EGGLDYLGNP+LVHAQSILA+   QVVLMG VEG+R+ G P +GE  D LYPGG  FDPLGLADDP  FAE
Sbjct:   41 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFAR-NGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP-LGEVIDPLYPGGS-FDPLGLADDPEAFAE 209          
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 7.111e-63
Identity = 120/171 (70.18%), Postives = 133/171 (77.78%), Query Frame = 1
Query:   88 AKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAE 600
            AK       WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+  +   V F E VW KAG+QIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R+ G P     + LYPGG  FDPLGLA+DP  FAE
Sbjct:   42 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFAR-NGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGS-FDPLGLAEDPEAFAE 210          
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 7.111e-63
Identity = 122/163 (74.85%), Postives = 133/163 (81.60%), Query Frame = 1
Query:  115 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600
            WYG DRV YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLADDP  FAE
Sbjct:   45 WYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAE 204          
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 9.287e-63
Identity = 122/171 (71.35%), Postives = 137/171 (80.12%), Query Frame = 1
Query:   91 KYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600
            K    +  W+GPD VKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+RI G P +GE  D LYPGG  FDPLGLA+ P  FAE
Sbjct:    4 KVASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLAEVPEAFAE 171          
BLAST of CF417579 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 239.58 bits (610), Expect = 9.287e-63
Identity = 122/163 (74.85%), Postives = 133/163 (81.60%), Query Frame = 1
Query:  115 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAE 600
            WYG DRV YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLADDP  FAE
Sbjct:   49 WYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGA-FDPLGLADDPEAFAE 208          
The following BLAST results are available for this feature:
BLAST of CF417579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB21_PINTH1.433e-6361.90Chlorophyll a-b binding protein type I, chloroplas... [more]
CB2A_PYRPY1.871e-6373.01Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB23_APIGR2.444e-6371.35Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_MAIZE4.169e-6361.50Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SOYBN4.169e-6364.62Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_PETSP4.169e-6371.51Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB22_PETSP7.111e-6370.18Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB22_ORYSJ7.111e-6374.85Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_PEA9.287e-6371.35Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB21_ORYSJ9.287e-6374.85Chlorophyll a-b binding protein 1, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-509 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417579 ID=CF417579; Name=CF417579; organism=Citrus sinensis; type=EST; length=602bp
TCTAGCACTTCTCTTAGGGCAACCCCATTTCTTGGCCAGAGTAGGACAAC
TGCTAACGCTCTAAAAGATGTTGTTCCGATGGGGAATGCCAAGTACACAA
TGGGAAATGAACTGTGGTATGGGCCAGACAGGGTGAAGTACTTGGGACCC
TTTTCAGCACAGACTCCATCATACTTGACTGGAGAGTTTCCAGGTGACTA
TGGATGGGACACTGCTGGTTTGTCTGCTGATCCCGAGGCCTTTGCCAGGA
ACAGGGCTCTTGAGGTGATCCATGGCAGGTGGGCTATGCTTGGAGCACTA
GGCTGCATCACCCCTGAAGTTCTCGAGAAATGGCTTAGAGTAGACTTCAA
GGAACCGGTTTGGTTCAAAGCTGGAGCTCAGATTTTCTCAGAAGGTGGCC
TTGACTACTTGGGAAACCCCAACCTTGTTCATGCTCAAAGCATTCTGGCT
GTCCTGGGATTCCAGGTTGTCCTCATGGGGCTCGTTGAGGGTTTCCGTAT
CAATGGCCTCCCTGGTGTCGGAGAAGGAAACGACCTCTACCCTGGTGGCC
AATATTTTGATCCCCTTGGCCTTGCTGATGATCCTGTTACGTTTGCTGAA
CT
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