CF417582

Overview
NameCF417582
Unique NameCF417582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9552 contig Csv1_Contig9552:400..1062. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_CHLAT (Pyruvate dehydrogenase E1 component subunit beta OS=Chlorokybus atmophyticus GN=pdhB PE=3 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 2.565e-75
Identity = 134/212 (63.21%), Postives = 167/212 (78.77%), Query Frame = 1
Query:   28 LFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVM 663
            LFEAL++ ++EEM+R+  V ++GED+GHYGGSYKVT+GL  KYG  RV+DTPIAE SF G  +GAA TGL P+VEGMNM F+LLA++QISNN GML  TSGG F              QLGAEHSQRLESYFQS+PG+Q+V CSTPYNAKGL+K+AIRS+NP++  EHVLLYNLK  +PD +Y+  LE+AE+VR G  +T+LTYSR RY+V+
Sbjct:    6 LFEALQKAIDEEMEREKRVVLIGEDIGHYGGSYKVTQGLYGKYGKHRVIDTPIAEYSFVGAAVGAAATGLIPVVEGMNMAFILLAYSQISNNMGMLCATSGGHFQVPMVLRGPGGIGKQLGAEHSQRLESYFQSVPGLQIVTCSTPYNAKGLLKSAIRSKNPILFIEHVLLYNLKGEVPDNDYLLPLEKAELVREGSDITVLTYSRQRYNVI 217          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_DICDI (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Dictyostelium discoideum GN=pdhB PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.381e-43
Identity = 88/214 (41.12%), Postives = 135/214 (63.08%), Query Frame = 1
Query:   19 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN----LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRM 648
            E+ + +A+   L+EE+ RD  V +MGE+V  Y G+YK+TKGL DKYG  R++DTPI E  F G+G+GAAM G RPI+E M   F + A + I N+    HY SGG+                +GA+HSQ   +++ S+PG+++VA  +  + +GL+K+AIR +NPV+  E  LLYN    L ++  D+EY+  + +A++ R G+ VTI+ +SR+
Sbjct:   28 EVTVRDAINSALDEELARDEKVFIMGEEVAQYNGAYKITKGLFDKYGGDRIIDTPITEAGFAGIGVGAAMAGTRPIIEFMTFNFAMQAIDHIINSSAKTHYMSGGKVFNPIVWRGPNGPPTAVGAQHSQCFAAWYGSVPGLKVVAPWSAADHRGLLKSAIRDDNPVVYLESELLYNYKFDLSDQEQDKEYLVPIGKAKVEREGKDVTIVGFSRI 241          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_ZYMMO (Pyruvate dehydrogenase E1 component subunit beta OS=Zymomonas mobilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 5.767e-43
Identity = 88/206 (42.72%), Postives = 133/206 (64.56%), Query Frame = 1
Query:   28 LFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPD-EEYICNLEEAEMVRPGEHVTILTYS 642
            L EALR+ + EEM RD  V VMGE+V  Y G+YKVT+GL  ++G  RV+DTPI+E  F+G+G+GAAM GLRP++E M M F + A + I N+    HY SGGQ               ++GA+H+Q    ++ ++PG+ ++A     +AKGL+KAAIRS++PV+  E  LLY     +P  ++++  + +A ++R G+ VTI++YS
Sbjct:  141 LREALRDAMAEEMRRDDRVFVMGEEVAEYQGAYKVTQGLLQEFGARRVVDTPISEYGFSGIGVGAAMEGLRPVIEFMTMNFSMQAIDHIINSAAKTHYMSGGQVRCPIVFRGPNGAAPRVGAQHTQNFGPWYAAVPGLVVLAPYDAIDAKGLLKAAIRSDDPVVFLECELLYGKTFDVPKMDDFVLPIGKARIIREGKDVTIVSYS 346          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_ARATH (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.191e-42
Identity = 88/214 (41.12%), Postives = 132/214 (61.68%), Query Frame = 1
Query:   19 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN----LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRM 648
            E+ + +AL   ++EEM  DP V VMGE+VG Y G+YK+TKGL +KYG  RV DTPI E  FTG+G+GAA  GL+P+VE M   F + A + I N+    +Y S GQ                +GA+HSQ   +++ S+PG++++A  +  +A+GL+KAAIR  +PV+  E+ LLY     + E   D  +   + +A++ R G+ VTI+T+S+M
Sbjct:   35 EMTVRDALNSAIDEEMSADPKVFVMGEEVGQYQGAYKITKGLLEKYGPERVYDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLAPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISEEALDSSFCLPIGKAKIEREGKDVTIVTFSKM 248          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODBB_BACSU (2-oxoisovalerate dehydrogenase subunit beta OS=Bacillus subtilis GN=bfmBAB PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.855e-41
Identity = 83/203 (40.89%), Postives = 129/203 (63.55%), Query Frame = 1
Query:   34 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNL-KERIPDEEYICNLEEAEMVRPGEHVTILTY 639
            +A+   ++EEM+RD  V V+GEDVG  GG +K T GL +++G+ RV+DTP+AE++  G+GIGAAM G+RPI E     F++ A NQI +    + Y S   ++                  HSQ +E+ F + PG+++V  STPY+AKGL+KAA+R E+PV+ FEH   Y L K  +P ++Y+  + +A++ R G+ +T++TY
Sbjct:    8 DAINLAMKEEMERDSRVFVLGEDVGRKGGVFKATAGLYEQFGEERVMDTPLAESAIAGVGIGAAMYGMRPIAEMQFADFIMPAVNQIISEAAKIRYRSNNDWSCPIVVRAPYGGGVHGALYHSQSVEAIFANQPGLKIVMPSTPYDAKGLLKAAVRDEDPVLFFEHKRAYRLIKGEVPADDYVLPIGKADVKREGDDITVITY 210          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODBB_THET2 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1756 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.423e-41
Identity = 87/215 (40.47%), Postives = 131/215 (60.93%), Query Frame = 1
Query:   22 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVM 663
            + + +AL   L+EEM +DP V V+GEDVG  GG + VT+GL  KYG  RV+DTP++E +  G  +G A  GLRP+ E     ++   F+Q+ +    L Y SGGQFT             + G  HSQ  E++F    G+++VA STPY+AKGL+KAAIR E+PV+  E   LY ++KE +P+E+Y  ++ +A + R G+ +T++ Y  +   V+
Sbjct:    4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKEEVPEEDYTLSIGKAALRREGKDLTLIGYGTVMPEVL 218          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODBB_THET8 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0230 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.397e-41
Identity = 87/215 (40.47%), Postives = 130/215 (60.47%), Query Frame = 1
Query:   22 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVM 663
            + + +AL   L+EEM +DP V V+GEDVG  GG + VT+GL  KYG  RV+DTP++E +  G  +G A  GLRP+ E     ++   F+Q+ +    L Y SGGQFT             + G  HSQ  E++F    G+++VA STPY+AKGL+KAAIR E+PV+  E   LY ++KE +P+E+Y   + +A + R G+ +T++ Y  +   V+
Sbjct:    4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKEEVPEEDYTLPIGKAALRREGKDLTLIGYGTVMPEVL 218          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_RICTY (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia typhi GN=pdhB PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.207e-41
Identity = 86/208 (41.35%), Postives = 127/208 (61.06%), Query Frame = 1
Query:   19 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYS 642
            ++ + EALR+ ++EEM RD  V V+GE+V  Y G+YKVT+GL +++G  RV+DTPI E  F G+ +GAA  GLRPIVE M   F + AF+ I N+    HY SGGQ               ++ A+HSQ   + +  IPG+++VA  +  + KGLM  AIR +NPVI  E+ +LY     +PD        +A++++ G +VTI+T+S
Sbjct:    2 QITVREALRDAMQEEMLRDDKVFVIGEEVAEYQGAYKVTQGLLEQFGSKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKCPIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSFDVPDIIEPIPFSKAKILKEGSNVTIVTFS 209          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_RICPR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia prowazekii GN=pdhB PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.207e-41
Identity = 86/208 (41.35%), Postives = 127/208 (61.06%), Query Frame = 1
Query:   19 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYS 642
            ++ + EALR+ ++EEM RD  V V+GE+V  Y G+YKVT+GL +++G  RV+DTPI E  F G+ +GAA  GLRPIVE M   F + AF+ I N+    HY SGGQ               ++ A+HSQ   + +  IPG+++VA  +  + KGLM  AIR +NPVI  E+ +LY     +PD        +A++++ G +VTI+T+S
Sbjct:    2 QITVREALRDAMQEEMLRDEKVFVIGEEVAEYQGAYKVTQGLLEQFGSKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKCPIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSFDVPDIIEPIPFSKAKILKEGSNVTIVTFS 209          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_RICFE (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia felis GN=pdhB PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.207e-41
Identity = 86/208 (41.35%), Postives = 126/208 (60.58%), Query Frame = 1
Query:   19 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYS 642
            ++ + EALR+ ++EEM RD  V VMGE+V  Y G+YKVT+GL +++G  RV+DTPI E  F G+ +GAA  GLRPIVE M   F + AF+ I N+    HY SGGQ               ++ A+HSQ   + +  +PG+++VA  +  + KGLM  AIR +NPVI  E+ +LY     +P+        +A+++R G  VTI+T+S
Sbjct:    2 QITVREALRDAMQEEMIRDDKVFVMGEEVAEYQGAYKVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQAKCPIVFRGPNGAASRVAAQHSQNYTACYSHVPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSFDVPETIEPIPFGQAKILREGSSVTIVTFS 209          
The following BLAST results are available for this feature:
BLAST of CF417582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_CHLAT2.565e-7563.21Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_DICDI3.381e-4341.12Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_ZYMMO5.767e-4342.72Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ARATH2.191e-4241.12Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODBB_BACSU1.855e-4140.892-oxoisovalerate dehydrogenase subunit beta OS=Bac... [more]
ODBB_THET22.423e-4140.472-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODBB_THET85.397e-4140.472-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODPB_RICTY9.207e-4141.35Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICPR9.207e-4141.35Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICFE9.207e-4141.35Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-512 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417582 ID=CF417582; Name=CF417582; organism=Citrus sinensis; type=EST; length=663bp
GCATCAAAGCAAGGGCACGAACTTTTACTTTTTGAAGCTCTACGAGAAGG
CTTGGAAGAAGAAATGGACAGAGATCCACATGTATGTGTCATGGGTGAAG
ATGTTGGTCACTATGGGGGTTCGTACAAAGTGACCAAAGGCCTGGCTGAT
AAGTATGGGGATCTCAGGGTTCTTGACACCCCTATTGCTGAGAACTCTTT
CACTGGTATGGGCATTGGGGCTGCCATGACTGGCTTGAGGCCAATTGTTG
AAGGAATGAACATGGGATTTCTTCTTTTAGCTTTCAACCAGATCTCCAAC
AACTGTGGTATGCTCCACTATACTTCTGGTGGGCAGTTTACCATACCAAT
AGTTATCCGTGGACCTGGTGGAGTTGGCCGACAACTTGGAGCTGAGCATT
CCCAACGCCTTGAGTCATATTTTCAATCAATCCCTGGAATTCAAATGGTG
GCATGCTCGACCCCATACAATGCCAAGGGCTTGATGAAAGCTGCAATCCG
AAGTGAGAACCCAGTTATACTTTTCGAGCATGTGTTGCTTTACAACCTCA
AGGAAAGGATTCCAGATGAGGAATACATTTGTAATCTTGAGGAAGCTGAG
ATGGTTAGGCCTGGGGAGCATGTCACTATTTTAACCTATTCTCGAATGAG
GTATCATGTGATG
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