CF417582

Overview
NameCF417582
Unique NameCF417582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9552 contig Csv1_Contig9552:400..1062. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_PEA (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.275e-38
Identity = 84/214 (39.25%), Postives = 127/214 (59.35%), Query Frame = 1
Query:   19 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN----LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRM 648
            ++ + +AL   L+ EM  D  V +MGE+VG Y G+YKVTKGL +KYG  RVLDTPI E  FTG+G+GAA  GL+P+VE M   F + A + I N+    +Y S GQ +              +GA+HS    S++ S PG++++   +  +A+GL+KAAIR  +PV+  E+ LLY     +   + D  +   + +A++ R G+ VTI  +S+M
Sbjct:   25 QMTVRDALNSALDVEMSADSKVFLMGEEVGEYQGAYKVTKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGLNGDAAGVGAQHSHCYASWYGSCPGLKVLVPHSAEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFWLPIGKAKIEREGKDVTITAFSKM 238          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_ASCSU (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.122e-37
Identity = 79/207 (38.16%), Postives = 123/207 (59.42%), Query Frame = 1
Query:   34 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDE----EYICNLEEAEMVRPGEHVTILTYS 642
            +AL   L+EE+ RD  V ++GE+V  Y G+YK++KGL  KYGD R+ DTPI E +  G+ +GAAM GLRPI E M+M F +   + I N+    HY S G+F               +  +HSQ   ++F   PG+++V      +A+GL+KAA+R +NPVI  E+ +LY +K  +  E    +++    +A++ RPG+ +TI++ S
Sbjct:   38 DALNAALDEEIKRDDRVFLIGEEVAQYDGAYKISKGLWKKYGDGRIWDTPITEMAIAGLSVGAAMNGLRPICEFMSMNFSMQGIDHIINSAAKAHYMSAGRFHVPIVFRGANGAAVGVAQQHSQDFTAWFMHCPGVKVVVPYDCEDARGLLKAAVRDDNPVICLENEILYGMKFPVSPEAQSPDFVLPFGQAKIQRPGKDITIVSLS 244          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ACOB_RALEH (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=acoB PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 3.620e-37
Identity = 86/219 (39.27%), Postives = 124/219 (56.62%), Query Frame = 1
Query:   37 ALREGLEEEMDRDPHVCVMGEDV----------GHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVM 663
            A+ E +++EM RDP V ++GED+            +GG   VTKGL  K+GD R+LDTP++E+++ G  IGAA  G+RPI E M + F+ + F+QI N      Y  GG+               +  A+HSQ L   F  IPG+++V  STPY+ KGL+  AIR  +PVI  EH  LY L+  +P+  Y     EA +VR G+ V+I+TY  M +  +
Sbjct:   10 AINEAIDQEMTRDPSVIMLGEDIVGGAGADGEKDAWGGVLGVTKGLYAKHGD-RLLDTPLSESAYVGAAIGAAACGMRPIAELMFIDFMGVCFDQIFNQAAKFRYMFGGKAETPVVIRAMVGAGFRAAAQHSQMLTPLFTHIPGLKVVCPSTPYDTKGLLIQAIRDNDPVIFCEHKNLYGLEGEVPEGAYAIPFGEANIVRDGKDVSIVTYGLMVHRAL 227          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_SCHPO (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=pdb1 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.728e-37
Identity = 80/209 (38.28%), Postives = 123/209 (58.85%), Query Frame = 1
Query:   19 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN----LKERIPDEEYICNLEEAEMVRPGEHVTIL 633
            E+ + +AL   +EEEM RD  V ++GE+V  Y G+YK+++GL DK+G  RV+DTPI E  FTG+  GAA  GLRPI E M   F + A + I N+     Y SGG                 + A+HSQ    ++ SIPG+++V+  +  +A+GL+KAAIR  NPV++ E+ +LY     + +    E+++     A++ RPG+ +TI+
Sbjct:   37 EMTVRDALNSAMEEEMKRDDRVFLIGEEVAQYNGAYKISRGLLDKFGPKRVIDTPITEMGFTGLATGAAFAGLRPICEFMTFNFSMQAIDHIVNSAARTLYMSGGIQACPIVFRGPNGPAAAVAAQHSQHFAPWYGSIPGLKVVSPYSAEDARGLLKAAIRDPNPVVVLENEILYGKTFPISKEALSEDFVLPFGLAKVERPGKDITIV 245          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_BACSU (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus subtilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 6.828e-36
Identity = 74/211 (35.07%), Postives = 121/211 (57.35%), Query Frame = 1
Query:   19 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRM 648
            ++ + +A+ + L  E+  D +V V GEDVG  GG ++ T+GL  ++G+ RV DTP+AE+   G+ +G  + G RP++E    GF+    + +S     + Y SGG++T                  H+  LE      PGI++V  STPY+AKGL+ +AIR  +PV+  EH+ LY + ++ +P+EEY   L +A++ R G  ++I+TY  M
Sbjct:    3 QMTMIQAITDALRTELKNDENVLVFGEDVGVNGGVFRATEGLQKEFGEDRVFDTPLAESGIGGLALGLGLNGFRPVMEIQFFGFVYEVMDSVSGQMARMRYRSGGRWTSPVTIRSPFGGGVHTPELHADSLEGLVAQQPGIKVVIPSTPYDAKGLLISAIRDNDPVVFLEHMKLYRSFRQEVPEEEYTIELGKADVKREGTDLSIITYGAM 213          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_STAES (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhB PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.549e-35
Identity = 71/211 (33.65%), Postives = 124/211 (58.77%), Query Frame = 1
Query:   19 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRM 648
            ++ + +A+ + L+ E+ RD  V V GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+TG RP++E   +GF+   F++++       + SGG                     H+  LE      PG+++V  S PY+AKGL+ ++I+S +PV+  EH+ LY + +E +P+EEY  ++ +A + + G  +T+++Y  M
Sbjct:    3 QMTMVQAINDALKSELKRDEDVLVFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLALGLAVTGFRPVMEIQFLGFVYEVFDEVAGQIARTRFRSGGTKPAPVTIRTPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIQSNDPVVYLEHMKLYRSFREEVPEEEYKIDIGKANVKKEGNDITLISYGAM 213          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_STAEQ (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdhB PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.549e-35
Identity = 71/211 (33.65%), Postives = 124/211 (58.77%), Query Frame = 1
Query:   19 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRM 648
            ++ + +A+ + L+ E+ RD  V V GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+TG RP++E   +GF+   F++++       + SGG                     H+  LE      PG+++V  S PY+AKGL+ ++I+S +PV+  EH+ LY + +E +P+EEY  ++ +A + + G  +T+++Y  M
Sbjct:    3 QMTMVQAINDALKSELKRDEDVLVFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLALGLAVTGFRPVMEIQFLGFVYEVFDEVAGQIARTRFRSGGTKPAPVTIRTPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIQSNDPVVYLEHMKLYRSFREEVPEEEYKIDIGKANVKKEGNDITLISYGAM 213          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_STAAW (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MW2) GN=pdhB PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.549e-35
Identity = 72/211 (34.12%), Postives = 122/211 (57.82%), Query Frame = 1
Query:   19 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRM 648
            ++ + +A+ + L+ E+  D  V + GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E   +GF+   F+ I+       + SGG  T                  H+  LE      PG+++V  S PY+AKGL+ ++IRS +PV+  EH+ LY + +E +P+EEY  ++ +A + + G  ++I+TY  M
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAM 213          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_STAAU (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus GN=pdhB PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.549e-35
Identity = 72/211 (34.12%), Postives = 122/211 (57.82%), Query Frame = 1
Query:   19 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRM 648
            ++ + +A+ + L+ E+  D  V + GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E   +GF+   F+ I+       + SGG  T                  H+  LE      PG+++V  S PY+AKGL+ ++IRS +PV+  EH+ LY + +E +P+EEY  ++ +A + + G  ++I+TY  M
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAM 213          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_STAAS (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MSSA476) GN=pdhB PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.549e-35
Identity = 72/211 (34.12%), Postives = 122/211 (57.82%), Query Frame = 1
Query:   19 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRM 648
            ++ + +A+ + L+ E+  D  V + GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E   +GF+   F+ I+       + SGG  T                  H+  LE      PG+++V  S PY+AKGL+ ++IRS +PV+  EH+ LY + +E +P+EEY  ++ +A + + G  ++I+TY  M
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAM 213          
The following BLAST results are available for this feature:
BLAST of CF417582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_PEA3.275e-3839.25Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_ASCSU2.122e-3738.16Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ACOB_RALEH3.620e-3739.27Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPB_SCHPO4.728e-3738.28Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_BACSU6.828e-3635.07Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAES7.549e-3533.65Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAEQ7.549e-3533.65Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAW7.549e-3534.12Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAU7.549e-3534.12Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAS7.549e-3534.12Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-512 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417582 ID=CF417582; Name=CF417582; organism=Citrus sinensis; type=EST; length=663bp
GCATCAAAGCAAGGGCACGAACTTTTACTTTTTGAAGCTCTACGAGAAGG
CTTGGAAGAAGAAATGGACAGAGATCCACATGTATGTGTCATGGGTGAAG
ATGTTGGTCACTATGGGGGTTCGTACAAAGTGACCAAAGGCCTGGCTGAT
AAGTATGGGGATCTCAGGGTTCTTGACACCCCTATTGCTGAGAACTCTTT
CACTGGTATGGGCATTGGGGCTGCCATGACTGGCTTGAGGCCAATTGTTG
AAGGAATGAACATGGGATTTCTTCTTTTAGCTTTCAACCAGATCTCCAAC
AACTGTGGTATGCTCCACTATACTTCTGGTGGGCAGTTTACCATACCAAT
AGTTATCCGTGGACCTGGTGGAGTTGGCCGACAACTTGGAGCTGAGCATT
CCCAACGCCTTGAGTCATATTTTCAATCAATCCCTGGAATTCAAATGGTG
GCATGCTCGACCCCATACAATGCCAAGGGCTTGATGAAAGCTGCAATCCG
AAGTGAGAACCCAGTTATACTTTTCGAGCATGTGTTGCTTTACAACCTCA
AGGAAAGGATTCCAGATGAGGAATACATTTGTAATCTTGAGGAAGCTGAG
ATGGTTAGGCCTGGGGAGCATGTCACTATTTTAACCTATTCTCGAATGAG
GTATCATGTGATG
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