CF417582

Overview
NameCF417582
Unique NameCF417582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9552 contig Csv1_Contig9552:400..1062. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_STAAR (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MRSA252) GN=pdhB PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.549e-35
Identity = 72/211 (34.12%), Postives = 122/211 (57.82%), Query Frame = 1
Query:   19 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRM 648
            ++ + +A+ + L+ E+  D  V + GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E   +GF+   F+ I+       + SGG  T                  H+  LE      PG+++V  S PY+AKGL+ ++IRS +PV+  EH+ LY + +E +P+EEY  ++ +A + + G  ++I+TY  M
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAM 213          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_STAAN (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain N315) GN=pdhB PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.549e-35
Identity = 72/211 (34.12%), Postives = 122/211 (57.82%), Query Frame = 1
Query:   19 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRM 648
            ++ + +A+ + L+ E+  D  V + GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E   +GF+   F+ I+       + SGG  T                  H+  LE      PG+++V  S PY+AKGL+ ++IRS +PV+  EH+ LY + +E +P+EEY  ++ +A + + G  ++I+TY  M
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAM 213          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_STAAM (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhB PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.549e-35
Identity = 72/211 (34.12%), Postives = 122/211 (57.82%), Query Frame = 1
Query:   19 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRM 648
            ++ + +A+ + L+ E+  D  V + GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E   +GF+   F+ I+       + SGG  T                  H+  LE      PG+++V  S PY+AKGL+ ++IRS +PV+  EH+ LY + +E +P+EEY  ++ +A + + G  ++I+TY  M
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAM 213          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_STAAC (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain COL) GN=pdhB PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.549e-35
Identity = 72/211 (34.12%), Postives = 122/211 (57.82%), Query Frame = 1
Query:   19 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRM 648
            ++ + +A+ + L+ E+  D  V + GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E   +GF+   F+ I+       + SGG  T                  H+  LE      PG+++V  S PY+AKGL+ ++IRS +PV+  EH+ LY + +E +P+EEY  ++ +A + + G  ++I+TY  M
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRGPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAM 213          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_ACHLA (Pyruvate dehydrogenase E1 component subunit beta OS=Acholeplasma laidlawii GN=pdhB PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.859e-35
Identity = 75/207 (36.23%), Postives = 118/207 (57.00%), Query Frame = 1
Query:   22 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNL-KERIPDEEYICNLEEAEMVRPGEHVTILTY 639
            + L EA+ + +++ M++D  + V GED G  GG ++VT GL  KYG+ RV DTPIAE++  G  +G A+ GL+PI E    GF+   +  +  +   +   S GQFT             +    HS+ LE  F SIPG+++V  STPY+AKGL+ AAI   +PV+  E   +Y   K+ +P E Y   + +A++V+ G  +T++ +
Sbjct:    4 ITLLEAINQAIDQAMEKDESIVVFGEDAGFEGGVFRVTAGLQKKYGETRVFDTPIAESAIVGSAVGMAINGLKPIAEIQFDGFIFPGYTDLVTHAARMRNRSRGQFTVPMVLRLPHGGGIRALEHHSEALEVLFGSIPGLKVVTPSTPYDAKGLLLAAINDPDPVVFLEPKRIYRAGKQEVPAEMYEIPIGKAKVVKQGTDMTVVAW 210          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_BACST (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus stearothermophilus GN=pdhB PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.196e-34
Identity = 73/211 (34.60%), Postives = 119/211 (56.40%), Query Frame = 1
Query:   19 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRM 648
            ++ + +A+ + L  E+  DP+V + GEDVG  GG ++ T+GL  ++G+ RV DTP+AE+   G+ IG A+ G RP+ E    GF+    + I      + Y +GG++                   HS  LE      PG+++V  STPY+AKGL+ +AIR  +PVI  EH+ LY + ++ +P+ EY   + +A++ R G+ +TI+ Y  M
Sbjct:    3 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGGVHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRSFRQEVPEGEYTIPIGKADIKREGKDITIIAYGAM 213          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_MYCGE (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma genitalium GN=pdhB PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.172e-33
Identity = 79/203 (38.92%), Postives = 112/203 (55.17%), Query Frame = 1
Query:   34 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN-LKERIPDEEYICNLEEAEMVRPGEHVTILTY 639
            EAL   ++  ++RD +V + G+D G  GG ++ TKGL  KYG  RV D PIAENS  G+G+GAA+ GL+PIVE    GF   A  QI  +   +   S G +T             +    HS+ LE+ +  I G++ V  S PY+ KGL  AAI S +PVI FE   LY   ++ IP + Y   + EA ++  G  +TI++Y
Sbjct:   10 EALNNAMDLALERDQNVVLYGQDAGFEGGVFRATKGLQQKYGSERVWDCPIAENSMAGIGVGAAIGGLKPIVEIQFSGFSFPAMFQIFVHAARIRNRSRGVYTAPLVVRMPMGGGIKALEHHSETLEAIYAQIAGLKTVMPSNPYDTKGLFLAAIESPDPVIFFEPKKLYRAFRQEIPSDYYTVPIGEANLISEGSELTIVSY 212          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODBB_DICDI (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Dictyostelium discoideum GN=bkdB PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.172e-33
Identity = 82/204 (40.20%), Postives = 112/204 (54.90%), Query Frame = 1
Query:   28 LFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAE-HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKERIPDEEYICNLEEAEMVRPGEHVTIL 633
            LF+A+  G++  M +D    V GEDVG +GG ++ T GL DKYG  RV +TP+ E    G  IG A  G  PI E     ++  AF+QI N      Y SGGQF                G   HSQ  ESYF   PG+++V  STP  AKGL+ A+IR ++PVI FE  L+Y +  E +P  +Y   L +A +V+ G+ +TI+
Sbjct:   51 LFQAINNGMDIAMQKDSKAVVFGEDVG-FGGVFRCTVGLRDKYGASRVFNTPLCEQGIAGFAIGLAAQGATPIAEIQFADYIFPAFDQIVNEAAKYRYRSGGQFDCGSLTIRSPYGAVGHGGHYHSQSPESYFGHTPGLKVVIPSTPIEAKGLLLASIREKDPVIFFEPKLMYRSAVEEVPIGDYEIPLGKARIVKEGKDITII 253          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODBB_PSEAE (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas aeruginosa GN=bkdA2 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.205e-32
Identity = 79/228 (34.65%), Postives = 117/228 (51.32%), Query Frame = 1
Query:   22 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN-----------------LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRY 654
            + + +ALR  ++  ++RD  V V G+DVG++GG ++ T+GL  KYG  RV D PI+E+   G  +G    GLRP+VE     ++  A +Q+ +    L Y S G F                G  HSQ  E+ F  + G++ V  S PY+AKGL+ A I +++PVI  E   LYN                    ++PD  Y   L++A +VRPG  +T+LTY  M Y
Sbjct:   17 MTMIQALRSAMDIMLERDDDVVVFGQDVGYFGGVFRCTEGLQKKYGTSRVFDAPISESGIIGAAVGMGAYGLRPVVEIQFADYVYPASDQLISEAARLRYRSAGDFIVPMTVRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIACIENDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPASQVPDGYYKVPLDKAAIVRPGAALTVLTYGTMVY 244          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ACOB_BACSU (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Bacillus subtilis GN=acoB PE=3 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 2.056e-32
Identity = 79/216 (36.57%), Postives = 113/216 (52.31%), Query Frame = 1
Query:   34 EALREGLEEEMDRDPHVCVMGEDVGH------------YGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSR 645
            +A+ E ++  M +D +V ++GEDV              +GG   VTKGL  ++G  RVLDTPI+E  + G  + AA TGLRPI E M   F+   F+Q+ N      Y  GG+               +  A+HSQ L   F SIPG++ V  S PY+AKGL+ AAI   +PV  FE    YN+K  +P++ Y   L +A++ R G  VT+    +
Sbjct:    9 DAINEAMKLAMRKDENVLLIGEDVAGGAAVDHLQDDEAWGGVLGVTKGLVQEFGRTRVLDTPISEAGYMGAAMAAASTGLRPIAELMFNDFIGTCFDQVINQGAKFRYMFGGKAQVPITVRTTYGAGFRAAAQHSQSLYGLFTSIPGLKTVVPSNPYDAKGLLLAAIEDNDPVFFFEDKTSYNMKGEVPEDYYTIPLGKADIKREGNDVTLFAVGK 224          
The following BLAST results are available for this feature:
BLAST of CF417582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_STAAR7.549e-3534.12Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAN7.549e-3534.12Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAM7.549e-3534.12Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAC7.549e-3534.12Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ACHLA9.859e-3536.23Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_BACST2.196e-3434.60Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MYCGE3.172e-3338.92Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_DICDI3.172e-3340.202-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_PSEAE1.205e-3234.652-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]
ACOB_BACSU2.056e-3236.57Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-512 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417582 ID=CF417582; Name=CF417582; organism=Citrus sinensis; type=EST; length=663bp
GCATCAAAGCAAGGGCACGAACTTTTACTTTTTGAAGCTCTACGAGAAGG
CTTGGAAGAAGAAATGGACAGAGATCCACATGTATGTGTCATGGGTGAAG
ATGTTGGTCACTATGGGGGTTCGTACAAAGTGACCAAAGGCCTGGCTGAT
AAGTATGGGGATCTCAGGGTTCTTGACACCCCTATTGCTGAGAACTCTTT
CACTGGTATGGGCATTGGGGCTGCCATGACTGGCTTGAGGCCAATTGTTG
AAGGAATGAACATGGGATTTCTTCTTTTAGCTTTCAACCAGATCTCCAAC
AACTGTGGTATGCTCCACTATACTTCTGGTGGGCAGTTTACCATACCAAT
AGTTATCCGTGGACCTGGTGGAGTTGGCCGACAACTTGGAGCTGAGCATT
CCCAACGCCTTGAGTCATATTTTCAATCAATCCCTGGAATTCAAATGGTG
GCATGCTCGACCCCATACAATGCCAAGGGCTTGATGAAAGCTGCAATCCG
AAGTGAGAACCCAGTTATACTTTTCGAGCATGTGTTGCTTTACAACCTCA
AGGAAAGGATTCCAGATGAGGAATACATTTGTAATCTTGAGGAAGCTGAG
ATGGTTAGGCCTGGGGAGCATGTCACTATTTTAACCTATTCTCGAATGAG
GTATCATGTGATG
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