CF417582

Overview
NameCF417582
Unique NameCF417582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9552 contig Csv1_Contig9552:400..1062. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_MYCPN (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma pneumoniae GN=pdhB PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.685e-32
Identity = 75/203 (36.95%), Postives = 114/203 (56.16%), Query Frame = 1
Query:   34 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN-LKERIPDEEYICNLEEAEMVRPGEHVTILTY 639
            EAL   ++  ++RDP+V + G+D G  GG ++ TKGL  KYG+ RV D PIAE +  G+G+GAA+ GL+PIVE    GF   A  QI  +   +   S G +T             +    HS+ LE+ +  I G++ V  S PY+ KGL  AA+ S +PV+ FE   LY   ++ IP + Y   + +A ++  G ++TI++Y
Sbjct:   11 EALGNAMDLALERDPNVVLYGQDAGFEGGVFRATKGLQKKYGEERVWDCPIAEAAMAGIGVGAAIGGLKPIVEIQFSGFSFPAMFQIFTHAARIRNRSRGVYTCPIIVRMPMGGGIKALEHHSETLEAIYGQIAGLKTVMPSNPYDTKGLFLAAVESPDPVVFFEPKKLYRAFRQEIPADYYTVPIGQANLISQGNNLTIVSY 213          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODBB_PSEPU (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas putida GN=bkdA2 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.580e-32
Identity = 78/228 (34.21%), Postives = 115/228 (50.44%), Query Frame = 1
Query:   22 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN-----------------LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRY 654
            + + +ALR  ++  ++RD +V V G+DVG++GG ++ T+GL  KYG  RV D PI+E+   G  +G    GLRP+VE     +   A +QI +    L Y S G+F                G  HSQ  E+ F  + G++ V  S PY+AKGL+ A+I  ++PVI  E   LYN                     +PD  Y   L++A + RPG  V++LTY    Y
Sbjct:    6 MTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVY 233          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODBB_BOVIN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Bos taurus GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.969e-31
Identity = 77/212 (36.32%), Postives = 113/212 (53.30%), Query Frame = 1
Query:   10 QGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGA-EHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLK-ERIPDEEYICNLEEAEMVRPGEHVTILTY 639
            Q  ++ LF+A+   L+  + +DP   + GEDV  +GG ++ T GL DKYG  RV +TP+ E    G GIG A+TG   I E     ++  AF+QI N      Y SG  F                GA  HSQ  E++F   PGI++V   +P+ AKGL+ + I  +NP I FE  +LY    E++P E Y   L +AE+++ G  VT++ +
Sbjct:   67 QTQKMNLFQAVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPVEPYNIPLSQAEVIQEGSDVTLVAW 277          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODBB_RAT (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus GN=Bckdhb PE=1 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 6.613e-31
Identity = 76/212 (35.85%), Postives = 113/212 (53.30%), Query Frame = 1
Query:   10 QGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGA-EHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLK-ERIPDEEYICNLEEAEMVRPGEHVTILTY 639
            Q  ++ LF+++   L+  + +DP   + GEDV  +GG ++ T GL DKYG  RV +TP+ E    G GIG A+TG   I E     ++  AF+QI N      Y SG  F                GA  HSQ  E++F   PGI++V   +P+ AKGL+ + I  +NP I FE  +LY    E++P E Y   L +AE+++ G  VT++ +
Sbjct:   65 QTQKMNLFQSITSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRAPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPVEPYKIPLSQAEVIQEGSDVTLVAW 275          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODBB_MOUSE (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Mus musculus GN=Bckdhb PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 6.613e-31
Identity = 76/212 (35.85%), Postives = 113/212 (53.30%), Query Frame = 1
Query:   10 QGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGA-EHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLK-ERIPDEEYICNLEEAEMVRPGEHVTILTY 639
            Q  ++ LF+++   L+  + +DP   + GEDV  +GG ++ T GL DKYG  RV +TP+ E    G GIG A+TG   I E     ++  AF+QI N      Y SG  F                GA  HSQ  E++F   PGI++V   +P+ AKGL+ + I  +NP I FE  +LY    E++P E Y   L +AE+++ G  VT++ +
Sbjct:   65 QTQKMNLFQSITSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRAPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPVEPYKIPLSQAEVIQEGSDVTLVAW 275          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODBB_HUMAN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo sapiens GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.128e-30
Identity = 76/212 (35.85%), Postives = 112/212 (52.83%), Query Frame = 1
Query:   10 QGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGA-EHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN-LKERIPDEEYICNLEEAEMVRPGEHVTILTY 639
            Q  ++ LF+++   L+  + +DP   + GEDV  +GG ++ T GL DKYG  RV +TP+ E    G GIG A+TG   I E     ++  AF+QI N      Y SG  F                GA  HSQ  E++F   PGI++V   +P+ AKGL+ + I  +NP I FE  +LY    E +P E Y   L +AE+++ G  VT++ +
Sbjct:   67 QTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAW 277          
BLAST of CF417582 vs. ExPASy Swiss-Prot
Match: ODPB_LEIXX (Pyruvate dehydrogenase E1 component subunit beta OS=Leifsonia xyli subsp. xyli GN=pdhB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.012e-28
Identity = 72/209 (34.45%), Postives = 110/209 (52.63%), Query Frame = 1
Query:   22 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRM 648
            L + +AL  GL + +  DP V ++GEDVG  GG ++VT+GL  ++G  RV+DTP+AE    G  IG AM G RP+VE    GF+   F+QI+     +     G  +                  H +  E+YF    G+++VA STP++A  +++ AI S++PVI FE +  Y  K  +   E    L  + +VR G   TI+ ++ M
Sbjct:   17 LPMVKALNAGLRQALVADPKVLILGEDVGPLGGVFRVTEGLQSEFGASRVVDTPLAEAGIVGTAIGLAMRGYRPVVEIQFNGFVFPGFDQITTQLAKMANRHSGAVSMPVVIRIPHGGHIGAVEHHQEAPEAYFAHTAGLRIVAPSTPHDAYWMIQEAIASDDPVIFFEPMSRYWPKGEVDTLENPLPLHASRIVRSGTDATIVAWAGM 225          
The following BLAST results are available for this feature:
BLAST of CF417582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_MYCPN2.685e-3236.95Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_PSEPU4.580e-3234.212-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]
ODBB_BOVIN2.969e-3136.322-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_RAT6.613e-3135.852-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_MOUSE6.613e-3135.852-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_HUMAN1.128e-3035.852-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODPB_LEIXX4.012e-2834.45Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-512 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417582 ID=CF417582; Name=CF417582; organism=Citrus sinensis; type=EST; length=663bp
GCATCAAAGCAAGGGCACGAACTTTTACTTTTTGAAGCTCTACGAGAAGG
CTTGGAAGAAGAAATGGACAGAGATCCACATGTATGTGTCATGGGTGAAG
ATGTTGGTCACTATGGGGGTTCGTACAAAGTGACCAAAGGCCTGGCTGAT
AAGTATGGGGATCTCAGGGTTCTTGACACCCCTATTGCTGAGAACTCTTT
CACTGGTATGGGCATTGGGGCTGCCATGACTGGCTTGAGGCCAATTGTTG
AAGGAATGAACATGGGATTTCTTCTTTTAGCTTTCAACCAGATCTCCAAC
AACTGTGGTATGCTCCACTATACTTCTGGTGGGCAGTTTACCATACCAAT
AGTTATCCGTGGACCTGGTGGAGTTGGCCGACAACTTGGAGCTGAGCATT
CCCAACGCCTTGAGTCATATTTTCAATCAATCCCTGGAATTCAAATGGTG
GCATGCTCGACCCCATACAATGCCAAGGGCTTGATGAAAGCTGCAATCCG
AAGTGAGAACCCAGTTATACTTTTCGAGCATGTGTTGCTTTACAACCTCA
AGGAAAGGATTCCAGATGAGGAATACATTTGTAATCTTGAGGAAGCTGAG
ATGGTTAGGCCTGGGGAGCATGTCACTATTTTAACCTATTCTCGAATGAG
GTATCATGTGATG
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