CF417588

Overview
NameCF417588
Unique NameCF417588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9975 contig Csv1_Contig9975:48..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417588 vs. ExPASy Swiss-Prot
Match: UDG_RICBR (UDP-glucose 6-dehydrogenase OS=Rickettsia bellii (strain RML369-C) GN=udg PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.485e-18
Identity = 61/178 (34.27%), Postives = 95/178 (53.37%), Query Frame = 3
Query:   33 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTY-WESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIG 560
            + I  IG+GYVG   ++ + +      V  +D   ++I+  N   LPIYE  LD    Q    + L F++   + +   + VF++V TP+K  G      ADL+Y +E+  ++   ++K D ++V KSTVP  +   I   L    KG  F + SNPEFL EG A++D   PDR++IG
Sbjct:    1 MNITFIGSGYVG--LVSGVMMSYLGHNVTCLDNDEAKISKLNKRILPIYETKLDKYFTQALEHERLKFTSFYNEELKNTEAVFITVGTPSKASG-----EADLSYVYEAIDKISLHINK-DCLIVIKSTVPPNSCNNIINYL--KEKGFSFNVASNPEFLREGNAVEDFLYPDRIVIG 168          
BLAST of CF417588 vs. ExPASy Swiss-Prot
Match: UDG_RICPR (UDP-glucose 6-dehydrogenase OS=Rickettsia prowazekii GN=udg PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.275e-17
Identity = 63/196 (32.14%), Postives = 95/196 (48.47%), Query Frame = 3
Query:   33 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYA 617
            + I  IG+GYVG   ++ I +      V  +D    +I+  N   LPIYE  LD  +K       L F+          D +F++V TP+K  G      ADL Y   A   ++     D ++V KSTVP  +   I   L   +KG  F + SNPEFL EG+A++D   PDR+++G       +++   L+ +YA
Sbjct:    1 MNITFIGSGYVG--LVSGIIMGYLGHNVTCLDNDDVKISKLNKKILPIYEAKLDEYLKHALESDRLKFTNIYSNEFRNFDAIFITVGTPSKELG-----EADLKYVYDAVDKVSKHINKDCLIVIKSTVPPGSCNNIIAYL--KAKGFSFNVASNPEFLREGSAVEDFLYPDRIVVG----VNNKESEALLRKIYA 183          
BLAST of CF417588 vs. ExPASy Swiss-Prot
Match: WECC_METM7 (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=wecC PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.145e-16
Identity = 66/198 (33.33%), Postives = 99/198 (50.00%), Query Frame = 3
Query:   36 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 626
            KIC IG GY+G PT +++A      EV  VD++  R+N   + +L I EPGL  +VK     KNL   T  E    EAD   + V TP      G+ K  DLTY  SA + I    K   ++V +ST+P +T + I + +       K  +   PE +  G  +++L   DR+ IGG      +K+ +  K++Y  +V
Sbjct:   11 KICVIGLGYIGLPTASMLANH--GYEVVGVDVNEKRVNHIKNGELKIEEPGLLTLVKGAINSKNLNVQTSAE----EADAFIICVPTPALENEDGS-KKCDLTYVMSAVQAIIPFLKDGNLIVVESTIPPETTKKIYETINK-----KIYVAHCPERVLPGKILKELVENDRI-IGG----INKKSAEMAKEIYKSFV 191          
BLAST of CF417588 vs. ExPASy Swiss-Prot
Match: ALGD_PSEAE (GDP-mannose 6-dehydrogenase OS=Pseudomonas aeruginosa GN=algD PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.195e-15
Identity = 62/202 (30.69%), Postives = 101/202 (50.00%), Query Frame = 3
Query:   33 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKN-LFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVY 614
            ++I   G GYVG      ++ +    EV  VD+S ++I+  N  + PI EPGL+ +++Q R    L  +TD +K V ++D+ F+ V TP+K  G       DL Y E+  R     I + S+   +VV  + +P      +  ++   S    G+ F + +NPEFL E TAI+D   P   +IG  +   G      L+++Y
Sbjct:    1 MRISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNG-----DLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGD----LLEEIY 191          
BLAST of CF417588 vs. ExPASy Swiss-Prot
Match: WECC_METMP (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis GN=wecC PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.561e-15
Identity = 64/198 (32.32%), Postives = 100/198 (50.51%), Query Frame = 3
Query:   36 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 626
            KIC IG GY+G PT +++A      +V  VD++  R+N   + +L I EPGL  +VK     KNL    +V    +EAD   + V TP   +  G+ K  DL+Y  SA   I    K   ++V +ST+P +T + I + L       K  +   PE +  G  +++L   DR+ IGG      +K+ +  K++Y  +V
Sbjct:   11 KICVIGLGYIGLPTASMLANH--GYDVVGVDVNEKRVNQIKNGELKIEEPGLLTLVKGAINSKNL----NVRTSATEADAFIICVPTPALAKEDGS-KKCDLSYVMSAVEAILPFVKDGNLIVIESTIPPETTKKIYETLNK-----KIYVAHCPERVLPGKILKELVENDRI-IGG----INKKSAEMAKEIYKSFV 191          
BLAST of CF417588 vs. ExPASy Swiss-Prot
Match: ALGD_PSEPK (GDP-mannose 6-dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=algD PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 61/192 (31.77%), Postives = 93/192 (48.44%), Query Frame = 3
Query:   33 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQG-LGAGKAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEG 581
            ++I   G GYVG      +  +    EV  VD+S ++I+  N  + PI EPGL+ +++Q      L  +TD  + +  +D+  + V TP+K  G LG      L Y ES  R    V+ D ++   IVV  + +P      +  IL   S    G+ F +  NPEFL E TAI+D   P   +IG  ++  G
Sbjct:    1 MRISIFGLGYVGAVCAGCLTAR--GHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGIANGRLRGTTDFAEAIRASDVSMICVGTPSKKNGDLG------LEYIESVCREIGYVLRDTTRRHTIVVRSTVLPGTVKNVVIPILEDCSGKKAGVDFGVAVNPEFLRESTAIKDYDQPPMTVIGELDSASG 184          
BLAST of CF417588 vs. ExPASy Swiss-Prot
Match: WECC_METM5 (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=wecC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.321e-14
Identity = 63/198 (31.82%), Postives = 99/198 (50.00%), Query Frame = 3
Query:   36 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-QCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 626
            KIC IG GY+G PT +++A      EV  VD++  R+N   + +L I EPGL  +VK     KNL    +V+   +EAD   + V TP      G+ K  DLTY   A + I    K   ++V +ST+P +  + I + +       K  +   PE +  G  +++L   DR+ IGG      +K+ +  K++Y  +V
Sbjct:   11 KICVIGLGYIGLPTASMLANH--GYEVVGVDVNEKRVNQIKNGELKIEEPGLLTLVKGAINSKNL----NVQTSATEADAFIICVPTPALENEDGS-KKCDLTYVMGAVQNIIPFLKEGNLIVIESTIPPEITKKIYETIDK-----KIYVAHCPERVLPGKILKELVENDRI-IGG----INKKSAEMAKEIYKSFV 191          
BLAST of CF417588 vs. ExPASy Swiss-Prot
Match: ALGD_PSESY (GDP-mannose 6-dehydrogenase OS=Pseudomonas syringae pv. syringae GN=algD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.844e-14
Identity = 62/192 (32.29%), Postives = 94/192 (48.96%), Query Frame = 3
Query:   33 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ--CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEG 581
            ++I   G GYVG      ++ +    EV  VDIS ++I+  N+ + PI EPGL+ ++++    GK L  +TD  + +   D+  + V TP+K  G       +L Y ES  R    V+ D +    IVV  + +P   A  +  IL   S    G+ F +  NPEFL E TAI+D   P   +IG  +   G
Sbjct:    1 MRISIFGLGYVGAVCAGCLSAR--GHEVVGVDISSTKIDLINNGKSPIVEPGLEELLQKGISTGK-LRGTTDFAEAIRATDLSMICVGTPSKKNG-----DLELDYIESVCREIGYVLRDKATRHTIVVRSTVLPGTVANVVIPILEDCSGKKAGVDFGVAVNPEFLRESTAIKDYDLPPMTVIGEFDKASG 184          
BLAST of CF417588 vs. ExPASy Swiss-Prot
Match: ALGD_PSESM (GDP-mannose 6-dehydrogenase OS=Pseudomonas syringae pv. tomato GN=algD PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.557e-14
Identity = 61/192 (31.77%), Postives = 94/192 (48.96%), Query Frame = 3
Query:   33 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ--CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEG 581
            ++I   G GYVG      ++ +    +V  VDIS ++I+  N+ + PI EPGL+ ++++    GK L  +TD  + +   D+  + V TP+K  G       +L Y ES  R    V+ D +    IVV  + +P   A  +  IL   S    G+ F +  NPEFL E TAI+D   P   +IG  +   G
Sbjct:    1 MRISIFGLGYVGAVCAGCLSAR--GHDVVGVDISSTKIDLINNGKSPIVEPGLEELLQKGLATGK-LRGTTDFAEAIRATDLSMICVGTPSKKNG-----DLELDYIESVCREIGYVLRDKNTRHTIVVRSTVLPGTVANVVIPILEDCSGKKAGVDFGVAVNPEFLRESTAIKDYDLPPMTVIGEFDKASG 184          
BLAST of CF417588 vs. ExPASy Swiss-Prot
Match: ALGD_PSESH (GDP-mannose 6-dehydrogenase OS=Pseudomonas syringae pv. phaseolicola GN=algD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14
Identity = 61/192 (31.77%), Postives = 94/192 (48.96%), Query Frame = 3
Query:   33 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ--CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEG 581
            ++I   G GYVG      ++ +    +V  VDIS ++I+  N+ + PI EPGL+ ++++    GK L  +TD  + +   D+  + V TP+K  G       +L Y ES  R    V+ D +    IVV  + +P   A  +  IL   S    G+ F +  NPEFL E TAI+D   P   +IG  +   G
Sbjct:    1 MRISIFGLGYVGAVCAGCLSAR--GHDVVGVDISSTKIDLINNGKSPIVEPGLEELLQKGISTGK-LRGTTDFAEAIRATDLSMICVGTPSKKNG-----DLELDYIESVCREIGYVLRDKATRHTIVVRSTVLPGTVANVVIPILEDCSGKKAGVDFGVAVNPEFLRESTAIKDYDLPPMTVIGEFDKASG 184          
The following BLAST results are available for this feature:
BLAST of CF417588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
UDG_RICBR7.485e-1834.27UDP-glucose 6-dehydrogenase OS=Rickettsia bellii (... [more]
UDG_RICPR8.275e-1732.14UDP-glucose 6-dehydrogenase OS=Rickettsia prowazek... [more]
WECC_METM73.145e-1633.33UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
ALGD_PSEAE1.195e-1530.69GDP-mannose 6-dehydrogenase OS=Pseudomonas aerugin... [more]
WECC_METMP1.561e-1532.32UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
ALGD_PSEPK4.541e-1531.77GDP-mannose 6-dehydrogenase OS=Pseudomonas putida ... [more]
WECC_METM51.321e-1431.82UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
ALGD_PSESY3.844e-1432.29GDP-mannose 6-dehydrogenase OS=Pseudomonas syringa... [more]
ALGD_PSESM6.557e-1431.77GDP-mannose 6-dehydrogenase OS=Pseudomonas syringa... [more]
ALGD_PSESH8.564e-1431.77GDP-mannose 6-dehydrogenase OS=Pseudomonas syringa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-518 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-006_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417588 ID=CF417588; Name=CF417588; organism=Citrus sinensis; type=EST; length=628bp
ACTGAGGTTATATTGATTAGTAAAGGAAAATGGTGAAGATCTGCTGCATC
GGTGCTGGGTATGTTGGGGGGCCGACAATGGCAGTCATTGCACTGAAGTG
CCCATCCATTGAAGTGGCTGTTGTTGATATCTCTGTGTCTCGGATCAATG
CCTGGAACAGTGACCAGCTCCCCATCTATGAGCCTGGACTTGATGGTGTG
GTAAAGCAGTGCCGAGGGAAGAACCTGTTCTTCAGCACCGATGTTGAGAA
GCATGTCTCTGAGGCTGATATTGTCTTTGTTTCGGTCAATACCCCAACTA
AAACTCAGGGTCTTGGTGCTGGCAAAGCTGCAGATCTGACATACTGGGAG
AGCGCTGCTCGTGTGATTGCCGATGTGTCAAAGTCTGACAAAATTGTTGT
TGAGAAATCAACAGTTCCTGTAAAAACTGCTGAGGCAATTGAAAAAATTT
TGACCCACAACAGCAAGGGAATCAAATTCCAGATCCTTTCAAACCCGGAG
TTTCTTGCTGAGGGAACTGCAATACAGGATCTTTTTAACCCAGATCGGGT
CCTTATCGGTGGTAGAGAAACGCCAGAAGGCCAGAAAGCCGTCAAAGCCT
TGAAGGATGTGTATGCACACTGGGTCCC
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