CF417601

Overview
NameCF417601
Unique NameCF417601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417601_ssr645 microsatellite CF417601_ssr645:645..656. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2216 contig Csv1_Contig2216:1021..1701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSI (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. indica GN=IAA5 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16
Identity = 36/74 (48.65%), Postives = 52/74 (70.27%), Query Frame = 3
Query:    3 QYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 224
            Q G   +  R+ L+     D L   E+VLTYEDKD DWMLVGD+PW++F   C++L+IM+ +DA G+APR++E+
Sbjct:  194 QSGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVGDLPWDLFTTICRKLKIMRGSDAAGIAPRSIEQ 267          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA12_ARATH (Auxin-responsive protein IAA12 OS=Arabidopsis thaliana GN=IAA12 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.212e-16
Identity = 42/73 (57.53%), Postives = 52/73 (71.23%), Query Frame = 3
Query:    6 YGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 224
            +G  G   RE +   +L D    S+FVLTYEDK+GDWMLVGDVPW MFI + KRLRIM +++A GLAPR  E+
Sbjct:  160 FGMTGTTCREKVKPLRLLD--GSSDFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRIMGTSEASGLAPRRQEQ 230          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA3_ARATH (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana GN=IAA3 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.389e-15
Identity = 37/49 (75.51%), Postives = 42/49 (85.71%), Query Frame = 3
Query:   57 KDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGL 203
            +D   GS+FV TYEDKDGDWML+GDVPWEMFI TCKRLRIMK ++A GL
Sbjct:  137 RDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRIMKGSEAKGL 185          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA13_ARATH (Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.079e-15
Identity = 40/68 (58.82%), Postives = 48/68 (70.59%), Query Frame = 3
Query:   18 GALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVE 221
            G +G        L+ L   SEFVLTYEDK+GDWMLVGDVPW MFI + KRLR+MK+++A GLA R  E
Sbjct:  170 GTVGLTSQFTKPLRLLDGSSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMKTSEANGLAARNQE 237          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA4_ARATH (Auxin-responsive protein IAA4 OS=Arabidopsis thaliana GN=IAA4 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.549e-14
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 3
Query:   72 GSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGL 203
            GS+FV TYEDKDGDWMLVGDVPWEMF+ +CKRLRIMK ++  GL
Sbjct:  138 GSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLRIMKGSEVKGL 181          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA4_PEA (Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA4/5 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 3
Query:   72 GSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGL 203
            GSE+  TYEDKDGDWMLVGDVPW+MF+ +CKRLRIMK T+A GL
Sbjct:  142 GSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGTEAKGL 185          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA10_ORYSJ (Auxin-responsive protein IAA10 OS=Oryza sativa subsp. japonica GN=IAA10 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 35/55 (63.64%), Postives = 45/55 (81.82%), Query Frame = 3
Query:   48 SKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPR 212
            + LK L + +E+ LTYED+DGDWMLVGDVPWEMF+ + KRLRIM+++DA GL  R
Sbjct:  212 NSLKLLDNSAEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIMRTSDANGLGQR 266          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: IAA10_ORYSI (Auxin-responsive protein IAA10 OS=Oryza sativa subsp. indica GN=IAA10 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 35/55 (63.64%), Postives = 45/55 (81.82%), Query Frame = 3
Query:   48 SKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPR 212
            + LK L + +E+ LTYED+DGDWMLVGDVPWEMF+ + KRLRIM+++DA GL  R
Sbjct:  212 NSLKLLDNSAEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIMRTSDANGLGQR 266          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: AX22D_PHAAU (Auxin-induced protein 22D OS=Phaseolus aureus GN=AUX22D PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 3
Query:   69 HGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGL 203
            +GSE+  TYEDKDGDWMLVGDVPW MF+ +CKRLRIMK ++A GL
Sbjct:  146 NGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIMKGSEAKGL 190          
BLAST of CF417601 vs. ExPASy Swiss-Prot
Match: AX22B_PHAAU (Auxin-induced protein 22B OS=Phaseolus aureus GN=AUX22B PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 3
Query:   72 GSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGL 203
            GSE+  TYEDKDGDWMLVGDVPW+MF+ +CKRLRIMK ++A GL
Sbjct:  149 GSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGL 192          
The following BLAST results are available for this feature:
BLAST of CF417601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
IAA5_ORYSI2.161e-1648.65Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
IAA12_ARATH8.212e-1657.53Auxin-responsive protein IAA12 OS=Arabidopsis thal... [more]
IAA3_ARATH2.389e-1575.51Auxin-responsive protein IAA3 OS=Arabidopsis thali... [more]
IAA13_ARATH9.079e-1558.82Auxin-responsive protein IAA13 OS=Arabidopsis thal... [more]
IAA4_ARATH1.549e-1477.27Auxin-responsive protein IAA4 OS=Arabidopsis thali... [more]
IAA4_PEA2.023e-1477.27Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA... [more]
IAA10_ORYSJ4.506e-1463.64Auxin-responsive protein IAA10 OS=Oryza sativa sub... [more]
IAA10_ORYSI4.506e-1463.64Auxin-responsive protein IAA10 OS=Oryza sativa sub... [more]
AX22D_PHAAU4.506e-1473.33Auxin-induced protein 22D OS=Phaseolus aureus GN=A... [more]
AX22B_PHAAU5.885e-1475.00Auxin-induced protein 22B OS=Phaseolus aureus GN=A... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-531 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417601 ID=CF417601; Name=CF417601; organism=Citrus sinensis; type=EST; length=681bp
GGCAATATGGATCTCATGGGGCTCTGGGCAGGGAGATGCTGAGTGAAAGC
AAGTTGAAGGATCTGCTACATGGCTCAGAATTCGTTCTCACTTATGAAGA
CAAAGATGGGGATTGGATGCTTGTGGGTGATGTCCCCTGGGAGATGTTTA
TTGGTACATGCAAGAGGTTGAGGATTATGAAGAGCACTGATGCCATTGGC
CTAGCGCCAAGGGCTGTGGAGAAATGCAGGAACAGAAACTAGCTACTGTT
CAACATATTGTTGGTATTCATCCAGCAATTCTCGGTGATAAAATTCTGGC
AGATGACAGAAAATAACATGATCCAAATTCATGCTTGGGGGTGTTGGAGG
GCATCTGCTTTTCTGTGTTACCACATTACTACGTTTACTGTGATGGATTT
TCATGTTCTGTAAGCTGTGATTGTTGTCCTGTTATTAAAATTATAAAACT
CTCGTAGACCTTGTATTTTGGAGTGAACCTCTGAGATTGGATCTCCTCAA
GGAGTTCTGACAAGTTCCTGTTCCCAACAGGTGCCTTAGTTTGTAAAGTG
CGTTGTTTGTTGAACTACTTTGTTATGCGTGCTTGTATGGTGAAAAAAAA
AAGACATCATCCATGTCATTAATTTGTAACCCTGTCTCCATTACCTGTCT
GTCTGTGCCATACTTTCATGTTGCTCTGTCT
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