CF417605
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1) HSP 1 Score: 235.343 bits (599), Expect = 1.999e-61 Identity = 114/139 (82.01%), Postives = 124/139 (89.21%), Query Frame = 3 Query: 117 GRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 533 GR SMR+T K+V S WYG DR K+LGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC+FPELL++NGV+FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVL G Sbjct: 32 GRFSMRRT-VKAVPQ-SIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMG 168 HSP 2 Score: 75.8702 bits (185), Expect = 2.047e-13 Identity = 35/49 (71.43%), Postives = 39/49 (79.59%), Query Frame = 1 Query: 511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645 LA W+ MG +EGYR+ GGPLGE DPLYPGG+FDPLGLADDPEAF Sbjct: 157 LAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAF 205
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 1.692e-60 Identity = 111/138 (80.43%), Postives = 120/138 (86.96%), Query Frame = 3 Query: 120 RISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 533 R +MR+T + S WYGPDR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FPELL +NGVKFGEAVWFKAG+QIF+EGGLDYLGNP+LIHAQSILAIWA QVVL G Sbjct: 34 RFTMRRTVKSAPES--IWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMG 169 HSP 2 Score: 73.559 bits (179), Expect = 1.016e-12 Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 1 Query: 511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645 LA W+ MG VEGYR+ GGPLGE DPLYPGG+FDPLGLADDP++F Sbjct: 158 LAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSF 206
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 3.961e-60 Identity = 101/158 (63.92%), Postives = 117/158 (74.05%), Query Frame = 3 Query: 63 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 533 F+G+ N P + ++ G ++ S WYGPDRVKYLGP S + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L + V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+ QVVL G Sbjct: 19 FLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMG 168 HSP 2 Score: 48.521 bits (114), Expect = 3.961e-60 Identity = 28/41 (68.29%), Postives = 30/41 (73.17%), Query Frame = 1 Query: 529 MGAVEGYRIAGGP-LGEVTDPLYPGGS-FDPLGLADDPEAF 645 MG VEG+RI G P +GE D LYPGG FDPLGLADDP F Sbjct: 167 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPTTF 206
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 6.734e-60 Identity = 103/157 (65.61%), Postives = 119/157 (75.80%), Query Frame = 3 Query: 69 GKAVNLAPSGN-ELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 533 G+A + +P + + GRI+M WYGPDRVKYLGP S + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L + GV+F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+ QV+L G Sbjct: 24 GRAASASPLRDIAAATNGRITM---------GNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMG 171 HSP 2 Score: 45.8246 bits (107), Expect = 6.734e-60 Identity = 27/41 (65.85%), Postives = 29/41 (70.73%), Query Frame = 1 Query: 529 MGAVEGYRIAG-GPLGEVTDPLYPGGS-FDPLGLADDPEAF 645 MG VEG+RI G +GE D LYPGG FDPLGLADDP F Sbjct: 170 MGLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTF 209
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 222.246 bits (565), Expect = 1.751e-57 Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 3 Query: 204 PLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536 P SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH WAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVL G+ Sbjct: 1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 111 HSP 2 Score: 85.5001 bits (210), Expect = 2.583e-16 Identity = 41/49 (83.67%), Postives = 43/49 (87.76%), Query Frame = 1 Query: 511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645 LA W+ MGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEAF Sbjct: 99 LAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAF 147
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 2.731e-55 Identity = 89/123 (72.36%), Postives = 105/123 (85.37%), Query Frame = 3 Query: 171 WYGPDRVKYLGPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 533 +YGPDR K+LGP S + P YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++ GV+FGE VWFKAGAQIF++GGL+YLGN SLIHAQSI+A A QVVL G Sbjct: 33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMG 155 HSP 2 Score: 51.2174 bits (121), Expect = 2.731e-55 Identity = 25/41 (60.98%), Postives = 27/41 (65.85%), Query Frame = 1 Query: 529 MGAVEGYRIAGGPLG--EVTDPLYPGGSFDPLGLADDPEAF 645 MG E YR GG G + D LYPGG FDPLGLADDP+ F Sbjct: 154 MGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTF 194
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 8.570e-54 Identity = 87/135 (64.44%), Postives = 101/135 (74.81%), Query Frame = 3 Query: 135 KTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 533 K SKS SS + +YGPD L + P TGEFPGDYGWDTAGLSADPETF + RELE+IH R +LGALG V PELLA +G+KFG+ A+WFKAGA IF +GGL+YLGNPSLIHAQ+I+A A QVVL G Sbjct: 45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMG 178 HSP 2 Score: 67.3958 bits (163), Expect = 8.570e-54 Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1 Query: 529 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645 MG VEGYR+ GGP GE DPLYPG +FDPLGLADDP+ F Sbjct: 177 MGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTF 215
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 2.893e-52 Identity = 107/157 (68.15%), Postives = 117/157 (74.52%), Query Frame = 3 Query: 66 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536 + K L P + L +M K +KS S S RVKYLGP SGE PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIH R AM ALGC+FPELL+ G FGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIW +V+L G+ Sbjct: 20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTC--DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGA 174 HSP 2 Score: 68.5514 bits (166), Expect = 3.268e-11 Identity = 37/49 (75.51%), Postives = 39/49 (79.59%), Query Frame = 1 Query: 511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645 LA W+ MGAVEGYRIA GPLGEVTDPLYP GSFD LGLA+D EAF Sbjct: 162 LAIWTTKVILMGAVEGYRIARGPLGEVTDPLYP-GSFDSLGLAEDTEAF 209
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.365e-29 Identity = 66/139 (47.48%), Postives = 79/139 (56.83%), Query Frame = 3 Query: 144 SKSVSSGSP----WYGPDRVKYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXGS 536 SK+VS S WYGPDR +L G L E P YL GE GDYG+D GL PE FAK + E+IH RWAMLGA G + PE L + G G EAVWFK GA + L+Y G I +LA+ A V+L G+ Sbjct: 49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVAEVVLLGGA 185 HSP 2 Score: 42.743 bits (99), Expect = 3.365e-29 Identity = 21/37 (56.76%), Postives = 24/37 (64.86%), Query Frame = 1 Query: 529 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPE 639 +G E YRI G + D L+PGG FDPLGLA DPE Sbjct: 182 LGGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPE 216
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.072e-22 Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 3 Query: 372 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLXG 533 ELL +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQVVL G Sbjct: 1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG 54 HSP 2 Score: 70.8626 bits (172), Expect = 6.585e-12 Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 1 Query: 511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEA 642 LA W+ MG +EGYR+ GGPLGE DPLYPG +FDPLGLADDPEA Sbjct: 43 LAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEA 90 The following BLAST results are available for this feature:
BLAST of CF417605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 70
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417605 ID=CF417605; Name=CF417605; organism=Citrus sinensis; type=EST; length=646bpback to top |