CF417605
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.649e-16 Identity = 49/138 (35.51%), Postives = 64/138 (46.38%), Query Frame = 3 Query: 66 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNP 473 VG LAPS +G T S V+ + W+ G+P P++L G PGD+G+D GL+ PE F + +E E+ HCRWAML G + PE L G W KA +G YLGNP Sbjct: 13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEWF-----------PGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP 132 HSP 2 Score: 32.7278 bits (73), Expect = 1.649e-16 Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = 1 Query: 592 YPGGSFDPLGLADDPEAF 645 YPGG+FDPLG + DP F Sbjct: 167 YPGGAFDPLGFSKDPAKF 184
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.674e-15 Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 1 Query: 511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645 LA W+ MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAF Sbjct: 160 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 208
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.674e-15 Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 1 Query: 511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645 LA W+ MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAF Sbjct: 160 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 208
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.674e-15 Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 1 Query: 511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645 LA W+ MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAF Sbjct: 9 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 57
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.674e-15 Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 1 Query: 511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645 LA W+ MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAF Sbjct: 158 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 206
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.674e-15 Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 1 Query: 511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645 LA W+ MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAF Sbjct: 158 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 206
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.828e-15 Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 3 Query: 219 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 512 PP +L G PGD+G+D GL++DPE+ N++ E++HCRWAMLGA G PELL + G+ W+ AG Q + + +L + +L WA Sbjct: 74 PPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWA 164
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.950e-15 Identity = 39/91 (42.86%), Postives = 48/91 (52.75%), Query Frame = 3 Query: 207 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNP 473 + G+P PSYL G PGD+G+D+ GL P + +E E+IHCRWAML G + PE L G W KA GG YLG P Sbjct: 50 MPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP 133 HSP 2 Score: 32.3426 bits (72), Expect = 2.950e-15 Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = 1 Query: 592 YPGGSFDPLGLADDPEAF 645 YPGG+FDPLG + DP F Sbjct: 168 YPGGAFDPLGYSKDPAKF 185
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 8.230e-15 Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = 3 Query: 141 GSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 512 GS+SV+ + PDR + PP +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G PE L + GV W+ AG Q + + +L + +L WA Sbjct: 50 GSRSVAVSAVAADPDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWA 164
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 5.898e-13 Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 3 Query: 210 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 437 + EPP+ LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PELL G+ WF+AG + Sbjct: 193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261 HSP 2 Score: 72.0182 bits (175), Expect = 2.927e-12 Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 3 Query: 219 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK 422 PP YLTGE GD G+D AGL+ADP TF + + EV HCR +ML +GC+ PELL G WF+ Sbjct: 380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWFQ 440 The following BLAST results are available for this feature:
BLAST of CF417605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 70
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417605 ID=CF417605; Name=CF417605; organism=Citrus sinensis; type=EST; length=646bpback to top |