CF417605

Overview
NameCF417605
Unique NameCF417605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9884 contig Csv1_Contig9884:45..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.649e-16
Identity = 49/138 (35.51%), Postives = 64/138 (46.38%), Query Frame = 3
Query:   66 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNP 473
            VG    LAPS     +G       T S  V+  + W+            G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP
Sbjct:   13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEWF-----------PGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP 132          

HSP 2 Score: 32.7278 bits (73), Expect = 1.649e-16
Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  592 YPGGSFDPLGLADDPEAF 645
            YPGG+FDPLG + DP  F
Sbjct:  167 YPGGAFDPLGFSKDPAKF 184          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.674e-15
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAF
Sbjct:  160 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 208          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.674e-15
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAF
Sbjct:  160 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 208          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.674e-15
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAF
Sbjct:    9 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 57          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.674e-15
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAF
Sbjct:  158 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 206          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.674e-15
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 1
Query:  511 LARWSX----MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 645
            LA W+     MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAF
Sbjct:  158 LAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAF 206          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.828e-15
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 3
Query:  219 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 512
            PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA
Sbjct:   74 PPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWA 164          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.950e-15
Identity = 39/91 (42.86%), Postives = 48/91 (52.75%), Query Frame = 3
Query:  207 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNP 473
            + G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P
Sbjct:   50 MPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP 133          

HSP 2 Score: 32.3426 bits (72), Expect = 2.950e-15
Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  592 YPGGSFDPLGLADDPEAF 645
            YPGG+FDPLG + DP  F
Sbjct:  168 YPGGAFDPLGYSKDPAKF 185          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.230e-15
Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = 3
Query:  141 GSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 512
            GS+SV+  +    PDR  +       PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q +      +    +L   + +L  WA
Sbjct:   50 GSRSVAVSAVAADPDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWA 164          
BLAST of CF417605 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.898e-13
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  210 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 437
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261          

HSP 2 Score: 72.0182 bits (175), Expect = 2.927e-12
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 3
Query:  219 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK 422
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF+
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWFQ 440          
The following BLAST results are available for this feature:
BLAST of CF417605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB121_HORVU1.649e-1635.51Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB2F_SOLLC1.674e-1581.63Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.674e-1581.63Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC1.674e-1581.63Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC1.674e-1581.63Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC1.674e-1581.63Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB12_SOLLC2.828e-1539.80Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB11_SOLLC2.950e-1542.86Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB12_PETHY8.230e-1536.29Chlorophyll a-b binding protein, chloroplastic OS=... [more]
LH18_EUGGR5.898e-1346.05Light-harvesting complex I LH38 proteins (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-535 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417605 ID=CF417605; Name=CF417605; organism=Citrus sinensis; type=EST; length=646bp
CAGCTTCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCAACAATGGCT
CTCTCCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAA
TGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGT
CTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTG
GGCCCACTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGG
CGACTACGGTTGGGACACTGCCGGGCTTTCAGCTGACCCAGAAACCTTTG
CCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGA
GCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTT
CGGTGAGGCTGTGTGGTTCAAGGCGGGAGCTCAGATCTTCAGCGAGGGCG
GGCTTGACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATCTTG
GCCATCTGGGCTTGCCAGGTGGTCTTGNATGGGAGCCGTTGAGGGTTACA
GAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGT
GGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTG
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