CF417612

Overview
NameCF417612
Unique NameCF417612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: GME_ARATH (GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.548e-15
Identity = 53/164 (32.32%), Postives = 81/164 (49.39%), Query Frame = 1
Query:   19 PIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGR--VVSNFIAQALRG-EPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPEIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 501
            P   +  Y   K   E L   Y++  GI+ RI R  N YGP      GR    + F  +A    +   +   G QTRSF ++ + V+G++RL + +   PVNIG+    +M E+AE V      ++ I  +   P+  R R  D +  KE LGW P ++L++GL
Sbjct:  167 PAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPG-PEGVRGRNSDNNLIKEKLGWAPNMRLKEGL 329          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: Y1055_METJA (Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii GN=MJ1055 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.613e-13
Identity = 46/157 (29.30%), Postives = 79/157 (50.32%), Query Frame = 1
Query:   34 SCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPV-NIGNPGEFTMLELAETVKELINPEIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 501
            S Y   KR  E +   YH  +GI++   R F  YG     D       F    L G+ + V   G   R F Y+SD+VDG++R ++ +    + N+GN     ++   E +++ +N + + K +     D  +   D+SK+++LLG++PKV + +GL
Sbjct:  155 SLYASTKRSNELMAHVYHHLYGIKMIGLRFFTVYGEYGRPD--MAYFKFAKNILLGKEIEVYNYGNMERDFTYISDVVDGILRAIKKDFDYEIFNLGNSKPVKLMYFIELIEKYLNKKAKKKFLPMQDGDVLRTYADLSKSEKLLGYKPKVTIEEGL 309          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP7 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=arnA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.107e-13
Identity = 56/188 (29.79%), Postives = 92/188 (48.94%), Query Frame = 1
Query:   13 VNPIGV-RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLME---GENTGP-VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495
            V PI   R  Y   K++ + +++ Y  ++G++  + R FN  GPR++      I   R ++  I   + G P+ + + G Q R F  +SD ++ L R++E   G   G  +NIGNP  E ++ ELAE          +++   P    + VE++        D   RKP I  AK  L WEPKV++ +
Sbjct:  453 VGPINKQRWIYSVSKQLLDRVIWAYGDKNGLKFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIEGGKQKRCFTDISDGIEALFRIIENKDGRCDGQIINIGNPDNEASIKELAEMLLACFERHPLRDRFPPFAGFREVESSDYYGKGYQDVEHRKPSIRNAKRCLNWEPKVEMEE 640          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.693e-13
Identity = 49/157 (31.21%), Postives = 80/157 (50.96%), Query Frame = 1
Query:   40 YDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGL-IRLMEGENTGPVNIGNPGEFTMLELAETVKELI--NPEIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 501
            Y   K  AE L+  Y R +G+ +   R  N YGP  N    +++  FI  A+ G+PL +   G+  RS+ Y  D+ +   + L +GE     N+G   E  ++++A  + +L   +PE  I+ VEN P + ++   D  K K+ LGW+ +    DGL
Sbjct:  161 YSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGP--NQFPEKMIPKFILLAMSGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEIGHVYNVGTKRERRVIDVARDICKLFGKDPESSIQFVENRPFNDQRYFLDDQKLKK-LGWQERTNWEDGL 314          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ACBB_ACTS5 (dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain 50/110) GN=acbB PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.693e-13
Identity = 51/168 (30.36%), Postives = 76/168 (45.24%), Query Frame = 1
Query:    4 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPV-NIGNPGEFTMLELAETVKELIN-PEIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 501
            W   +P+   S Y   K  ++ L   YH+ HG+ + + R  N YGPR   +  +++  F+ + L G  + V   G   R + +VSD   GL   +     G V +IG   E T LEL E + E    P   I  V +     R+   D SK    LG+ P+V   DG+
Sbjct:  140 WAEGHPLAPNSPYAASKAGSDLLALAYHQTHGMDVVVTRCSNNYGPRQFPE--KMIPLFVTRLLDGLDVPVYGDGRNIRDWLHVSDHCRGLALALGAGRAGEVYHIGGGWEATNLELTEILLEACGAPASRISFVTDRKGHDRRYSLDYSKIAGELGYRPRVDFTDGI 305          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP3 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae (strain 342) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.045e-12
Identity = 55/188 (29.26%), Postives = 91/188 (48.40%), Query Frame = 1
Query:   13 VNPIGV-RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLME---GENTGP-VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495
            V PI   R  Y   K++ + +++ Y  ++ ++  + R FN  GPR++      I   R ++  I   + G P+ + + G Q R F  +SD ++ L R++E   G   G  +NIGNP  E ++ ELAE          +++   P    + VE++        D   RKP I  AK  L WEPKV++ +
Sbjct:  453 VGPINKQRWIYSVSKQLLDRVIWAYGDKYDLKFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIEGGKQKRCFTDISDGIEALFRIIENKDGRCDGQIINIGNPENEASIKELAEMLLACFERHPLRDRFPPFAGFREVESSDYYGKGYQDVEHRKPSIRNAKRCLNWEPKVEMEE 640          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.365e-12
Identity = 49/157 (31.21%), Postives = 80/157 (50.96%), Query Frame = 1
Query:   40 YDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGL-IRLMEGENTGPVNIGNPGEFTMLELAETVKEL--INPEIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 501
            Y   K  AE L+  Y R +G+ +   R  N YGP  N    +++  FI  A+ G+PL +   G+  RS+ Y  D+ +   + L +GE     NIG   E  ++++A  + +L  I+P+  I+ VEN P + ++   D  K K+ LGW  +    +GL
Sbjct:  159 YSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGP--NQFPEKLIPKFILLAMNGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEVNHVYNIGTTRERRVIDVANDISKLFGIDPDSTIQYVENRPFNDQRYFLDDQKLKK-LGWCERTNWEEGL 312          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.783e-12
Identity = 50/157 (31.85%), Postives = 79/157 (50.32%), Query Frame = 1
Query:   40 YDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGL-IRLMEGENTGPVNIGNPGEFTMLELAETVKELIN--PEIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 501
            Y   K  AE L+  Y R +G+ +   R  N YGP  N    +++  FI  A+RG+ L +   G+  RS+ Y  D+ +   + L +GE     NIG   E  + ++A+ + +L N  PE  IK V+N P + ++   D  K K+ LGW  +    +GL
Sbjct:  159 YSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGP--NQFPEKLIPKFILLAMRGQVLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEVGHVYNIGTKKERRVNDVAKDICKLFNMDPEANIKFVDNRPFNDQRYFLDDQKLKK-LGWSERTTWEEGL 312          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: FCL1_ORYSJ (Probable GDP-L-fucose synthase 1 OS=Oryza sativa subsp. japonica GN=Os06g0652400 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.783e-12
Identity = 50/148 (33.78%), Postives = 77/148 (52.03%), Query Frame = 1
Query:   82 YHRQHGIQIRIARIFNTYGPRMNI--DDGRVVSNFI-----AQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEG-ENTGPVNIGNPGEFTMLELAETVKELINPEIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 501
            Y  QHG     A   N YGP+ N   ++  V+   I     A+A     + V   G+  R F +V D+ D +I LM+       VN+G+  E T+ ELAE VKE++  + ++    + PD   ++  D SK +E +GW+PKV L++GL
Sbjct:  166 YRIQHGFDAISAMPTNLYGPQDNFHPENSHVLPALIRRFHEAKASNAAEVVVWGTGSPLREFLHVDDLADAVIFLMDHYSGLEHVNVGSGSEVTIKELAELVKEVVGFQGKLVWDSSKPDGTPRKLMDSSKIQE-MGWKPKVPLKEGL 312          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: RFBB_XANCB (dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv. campestris (strain B100) GN=rfbB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.189e-12
Identity = 48/174 (27.59%), Postives = 78/174 (44.83%), Query Frame = 1
Query:   19 PIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPV-NIGNPGEFTMLELAETVKELINP----------EIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPL 507
            P    S Y   K  ++ L+  +H  +G+ +      N YGP    +  +++   IA+AL GEPL V   G Q R + +VSD  + +  ++     G   N+G   E   +E+ + +  L++           E +I  V + P   R+   D SK K+ LGWEP      G+ L
Sbjct:  151 PYAPNSPYSASKAASDHLVRAFHHTYGLPVLTTNCSNNYGPYHFPE--KLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSDHCEAIRTVLAKGRVGETYNVGGNSERQNIEVVQAICALLDQHRPREDGKPRESQIAYVTDRPGHDRRYAIDASKLKDELGWEPAYTFEQGIAL 322          
The following BLAST results are available for this feature:
BLAST of CF417612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
GME_ARATH6.548e-1532.32GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana ... [more]
Y1055_METJA1.613e-1329.30Uncharacterized protein MJ1055 OS=Methanocaldococc... [more]
ARNA_KLEP72.107e-1329.79Bifunctional polymyxin resistance protein arnA OS=... [more]
RHM2_ARATH4.693e-1331.21Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
ACBB_ACTS54.693e-1330.36dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (... [more]
ARNA_KLEP31.045e-1229.26Bifunctional polymyxin resistance protein arnA OS=... [more]
RHM3_ARATH1.365e-1231.21Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
RHM1_ARATH1.783e-1231.85Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
FCL1_ORYSJ1.783e-1233.78Probable GDP-L-fucose synthase 1 OS=Oryza sativa s... [more]
RFBB_XANCB5.189e-1227.59dTDP-glucose 4,6-dehydratase OS=Xanthomonas campes... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-542 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417612 ID=CF417612; Name=CF417612; organism=Citrus sinensis; type=EST; length=654bp
TATTGGGGTAATGTCAATCCAATTGGGGTTCGTAGCTGCTATGATGAGGG
AAAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGACAGCATGGGA
TACAAATCCGCATTGCTAGAATCTTTAACACTTATGGACCACGCATGAAT
ATTGATGATGGGCGTGTGGTCAGCAATTTCATTGCTCAGGCACTACGAGG
TGAACCTTTGACTGTCCAAAAGCCTGGAACACAAACTCGCAGTTTCTGTT
ATGTCTCTGATATGGTGGATGGCCTTATTCGCCTCATGGAAGGAGAGAAC
ACTGGCCCAGTCAACATTGGAAACCCAGGTGAATTTACAATGCTTGAGCT
TGCTGAGACAGTGAAGGAGCTTATCAATCCTGAGATTGAGATAAAGATGG
TTGAGAACACTCCTGATGATCCACGACAAAGAAAACCTGACATCTCAAAA
GCAAAGGAATTGCTTGGATGGGAGCCAAAAGTCAAGTTGCGGGATGGACT
TCCTCTTATGGAAGAGGATTTCCGATCAAGGCTTGGAGTTCCCAAAAGGA
ATTAATAAAAACAGCAAGAATTATATCGATACAGGGTGAACACTTGAGTC
TTGGATTCTTTCCACCTAATGTGGGAGTGCTTTAGAATTAGAAACACAAG
TCCT
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