CF417612
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECOSM (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=arnA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12 Identity = 50/183 (27.32%), Postives = 85/183 (46.45%), Query Frame = 1 Query: 31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAETV---------KELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495 R Y K++ + +++ Y + G+Q + R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++E N G +NIGNP E ++ EL E + + P ++VE++ D RKP I A+ L WEPK+ +++ Sbjct: 460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIE--NAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNARRCLDWEPKIDMQE 640
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECOL6 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O6 GN=arnA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12 Identity = 50/183 (27.32%), Postives = 85/183 (46.45%), Query Frame = 1 Query: 31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAETV---------KELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495 R Y K++ + +++ Y + G+Q + R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++E N G +NIGNP E ++ EL E + + P ++VE++ D RKP I A+ L WEPK+ +++ Sbjct: 460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIE--NAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNARRCLDWEPKIDMQE 640
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECOL5 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=arnA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12 Identity = 50/183 (27.32%), Postives = 85/183 (46.45%), Query Frame = 1 Query: 31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAETV---------KELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495 R Y K++ + +++ Y + G+Q + R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++E N G +NIGNP E ++ EL E + + P ++VE++ D RKP I A+ L WEPK+ +++ Sbjct: 460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIE--NAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNARRCLDWEPKIDMQE 640
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECO7I (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=arnA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12 Identity = 50/183 (27.32%), Postives = 85/183 (46.45%), Query Frame = 1 Query: 31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAETV---------KELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495 R Y K++ + +++ Y + G+Q + R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++E N G +NIGNP E ++ EL E + + P ++VE++ D RKP I A+ L WEPK+ +++ Sbjct: 460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIE--NAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNARRCLDWEPKIDMQE 640
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECO27 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=arnA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12 Identity = 50/183 (27.32%), Postives = 85/183 (46.45%), Query Frame = 1 Query: 31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAETV---------KELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495 R Y K++ + +++ Y + G+Q + R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++E N G +NIGNP E ++ EL E + + P ++VE++ D RKP I A+ L WEPK+ +++ Sbjct: 460 RWIYSVSKQLIDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIE--NAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNARRCLDWEPKIDMQE 640
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_AERHH (Bifunctional polymyxin resistance protein arnA OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=arnA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12 Identity = 49/188 (26.06%), Postives = 89/188 (47.34%), Query Frame = 1 Query: 13 VNPIGV-RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP----VNIGNP-GEFTMLELAETV---------KELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495 V PI R Y K++ + +++ Y ++ G+ + R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++E + +NIGNP E ++ ++AE + ++ P K+VE+ D R+P I+ A+ LL WEP +++ + Sbjct: 455 VGPINKQRWIYSVSKQLLDRVIWAYGKKEGLNFTLFRPFNWMGPRLDSLDSARIGSSRAITQLILNLVDGTPIQLVDGGAQKRCFTDIEDGIEALFRIIENKENRCDGQIINIGNPDNEASIQQMAEILLAKFEAHPLRDHFPPFAGFKLVESKSFYGDGYQDVSHRRPSIANARRLLDWEPTIEMEE 642
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: TGDS_BOVIN (dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.156e-11 Identity = 51/169 (30.18%), Postives = 82/169 (48.52%), Query Frame = 1 Query: 40 YDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPV-NIGNPGEFTMLELAETVKELI---NPEIEIK-MVENTPDDPR--QRKPDISKAKELLGWEPKVKLRDGLPLMEEDFR 525 Y K AE + Y Q+ + I R N YGP + +V+ FI+ + G QTR+F Y +D+V+ + +++ G + NIG E ++L+LA+ + +LI N E E++ V+ D P R P S+ LGW PKV ++G+ E +R Sbjct: 166 YASSKAAAECFVQSYWEQYKFPVVITRSSNVYGPHQYPE--KVIPKFISLLQHNRKCCIHGTGLQTRNFLYATDVVEAFLTVLKKGKPGEIYNIGTNFEMSVLQLAKELIQLIKETNSESEMENWVDYVDDRPTNDMRYPMKSEKIHGLGWRPKVPWKEGIKKTIEWYR 332
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: RFBB_XANCP (dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv. campestris GN=rfbB PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.156e-11 Identity = 47/172 (27.33%), Postives = 77/172 (44.77%), Query Frame = 1 Query: 19 PIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPV-NIGNPGEFTMLELAETVKELINP----------EIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 501 P S Y K ++ L+ +H +G+ + N YGP + +++ IA+AL GEPL V G Q R + +VSD + + ++ G N+G E +E+ + + L++ E +I V + P R+ D SK K+ LGWEP G+ Sbjct: 151 PYAPNSPYSASKAASDHLVRAFHHTYGLPVLTTNCSNNYGPYHFPE--KLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSDHCEAIRTVLAKGRVGETYNVGGNSERQNIEVVQAICALLDQHRPREDGKPRESQIAYVTDRPGHDRRYAIDASKLKDELGWEPAYTFEQGI 320
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: YFNG_BACSU (Putative sugar dehydratase/epimerase yfnG OS=Bacillus subtilis GN=yfnG PE=3 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.510e-11 Identity = 44/166 (26.51%), Postives = 78/166 (46.99%), Query Frame = 1 Query: 19 PIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRL---MEGENTG--PVNIGNPGEFTMLELAETVKELINPEIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 501 P+ + YD K A+ + Y +G+ + I R N YG +++ R++ I L GE ++ GT R + Y+ D V + L ME N N N + T+LEL E + + +N ++ K++ ++ + + KA++LL W P + +GL Sbjct: 145 PLQGKHPYDVSKSCADLISHTYFHTYGLPVCITRCGNLYGGG-DLNFNRIIPQTIQLVLNGEAPEIRSDGTFVRDYFYIEDAVQAYLLLAEKMEENNLAGEAFNFSNEIQLTVLELVEKILKKMNSNLKPKVLNQGSNEIKHQYLSAEKARKLLNWTPAYTIDEGL 309
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: GALE_METJA (Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii GN=MJ0211 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.510e-11 Identity = 56/168 (33.33%), Postives = 85/168 (50.60%), Query Frame = 1 Query: 16 NPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN-IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPEIEIKMVENTPDDPRQRKP-----DISKAKELLGWEPKVKLRDGL 501 +PI S Y K V E + Y+R +GI+ I R N YG R + + V+S FI + L+ + + G QTR F YV D+ + + +N VNIG E ++ EL + +K EI + E D PR+ + DI KA E LGW+P++ L++G+ Sbjct: 132 HPINPLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYSNVYGERQDPKGEAGVISIFIDKMLKNQSPIIFGDGNQTRDFVYVGDVAKANLMALNWKNE-IVNIGTGKETSVNELFDIIKH----EIGFR-GEAIYDKPREGEVYRIYLDIKKA-ESLGWKPEIDLKEGI 292 The following BLAST results are available for this feature:
BLAST of CF417612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 73
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417612 ID=CF417612; Name=CF417612; organism=Citrus sinensis; type=EST; length=654bpback to top |