CF417612

Overview
NameCF417612
Unique NameCF417612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECOSM (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12
Identity = 50/183 (27.32%), Postives = 85/183 (46.45%), Query Frame = 1
Query:   31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAETV---------KELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495
            R  Y   K++ + +++ Y  + G+Q  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D ++ L R++E  N G       +NIGNP  E ++ EL E +         +    P    ++VE++        D   RKP I  A+  L WEPK+ +++
Sbjct:  460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIE--NAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNARRCLDWEPKIDMQE 640          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECOL6 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O6 GN=arnA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12
Identity = 50/183 (27.32%), Postives = 85/183 (46.45%), Query Frame = 1
Query:   31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAETV---------KELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495
            R  Y   K++ + +++ Y  + G+Q  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D ++ L R++E  N G       +NIGNP  E ++ EL E +         +    P    ++VE++        D   RKP I  A+  L WEPK+ +++
Sbjct:  460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIE--NAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNARRCLDWEPKIDMQE 640          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECOL5 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12
Identity = 50/183 (27.32%), Postives = 85/183 (46.45%), Query Frame = 1
Query:   31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAETV---------KELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495
            R  Y   K++ + +++ Y  + G+Q  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D ++ L R++E  N G       +NIGNP  E ++ EL E +         +    P    ++VE++        D   RKP I  A+  L WEPK+ +++
Sbjct:  460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIE--NAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNARRCLDWEPKIDMQE 640          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECO7I (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12
Identity = 50/183 (27.32%), Postives = 85/183 (46.45%), Query Frame = 1
Query:   31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAETV---------KELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495
            R  Y   K++ + +++ Y  + G+Q  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D ++ L R++E  N G       +NIGNP  E ++ EL E +         +    P    ++VE++        D   RKP I  A+  L WEPK+ +++
Sbjct:  460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIE--NAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNARRCLDWEPKIDMQE 640          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECO27 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12
Identity = 50/183 (27.32%), Postives = 85/183 (46.45%), Query Frame = 1
Query:   31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAETV---------KELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495
            R  Y   K++ + +++ Y  + G+Q  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D ++ L R++E  N G       +NIGNP  E ++ EL E +         +    P    ++VE++        D   RKP I  A+  L WEPK+ +++
Sbjct:  460 RWIYSVSKQLIDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIE--NAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNARRCLDWEPKIDMQE 640          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_AERHH (Bifunctional polymyxin resistance protein arnA OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=arnA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12
Identity = 49/188 (26.06%), Postives = 89/188 (47.34%), Query Frame = 1
Query:   13 VNPIGV-RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP----VNIGNP-GEFTMLELAETV---------KELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495
            V PI   R  Y   K++ + +++ Y ++ G+   + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D ++ L R++E +        +NIGNP  E ++ ++AE +         ++   P    K+VE+         D   R+P I+ A+ LL WEP +++ +
Sbjct:  455 VGPINKQRWIYSVSKQLLDRVIWAYGKKEGLNFTLFRPFNWMGPRLDSLDSARIGSSRAITQLILNLVDGTPIQLVDGGAQKRCFTDIEDGIEALFRIIENKENRCDGQIINIGNPDNEASIQQMAEILLAKFEAHPLRDHFPPFAGFKLVESKSFYGDGYQDVSHRRPSIANARRLLDWEPTIEMEE 642          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: TGDS_BOVIN (dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.156e-11
Identity = 51/169 (30.18%), Postives = 82/169 (48.52%), Query Frame = 1
Query:   40 YDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPV-NIGNPGEFTMLELAETVKELI---NPEIEIK-MVENTPDDPR--QRKPDISKAKELLGWEPKVKLRDGLPLMEEDFR 525
            Y   K  AE  +  Y  Q+   + I R  N YGP    +  +V+  FI+         +   G QTR+F Y +D+V+  + +++    G + NIG   E ++L+LA+ + +LI   N E E++  V+   D P    R P  S+    LGW PKV  ++G+    E +R
Sbjct:  166 YASSKAAAECFVQSYWEQYKFPVVITRSSNVYGPHQYPE--KVIPKFISLLQHNRKCCIHGTGLQTRNFLYATDVVEAFLTVLKKGKPGEIYNIGTNFEMSVLQLAKELIQLIKETNSESEMENWVDYVDDRPTNDMRYPMKSEKIHGLGWRPKVPWKEGIKKTIEWYR 332          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: RFBB_XANCP (dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv. campestris GN=rfbB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.156e-11
Identity = 47/172 (27.33%), Postives = 77/172 (44.77%), Query Frame = 1
Query:   19 PIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPV-NIGNPGEFTMLELAETVKELINP----------EIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 501
            P    S Y   K  ++ L+  +H  +G+ +      N YGP    +  +++   IA+AL GEPL V   G Q R + +VSD  + +  ++     G   N+G   E   +E+ + +  L++           E +I  V + P   R+   D SK K+ LGWEP      G+
Sbjct:  151 PYAPNSPYSASKAASDHLVRAFHHTYGLPVLTTNCSNNYGPYHFPE--KLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSDHCEAIRTVLAKGRVGETYNVGGNSERQNIEVVQAICALLDQHRPREDGKPRESQIAYVTDRPGHDRRYAIDASKLKDELGWEPAYTFEQGI 320          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: YFNG_BACSU (Putative sugar dehydratase/epimerase yfnG OS=Bacillus subtilis GN=yfnG PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.510e-11
Identity = 44/166 (26.51%), Postives = 78/166 (46.99%), Query Frame = 1
Query:   19 PIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRL---MEGENTG--PVNIGNPGEFTMLELAETVKELINPEIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 501
            P+  +  YD  K  A+ +   Y   +G+ + I R  N YG   +++  R++   I   L GE   ++  GT  R + Y+ D V   + L   ME  N      N  N  + T+LEL E + + +N  ++ K++    ++ + +     KA++LL W P   + +GL
Sbjct:  145 PLQGKHPYDVSKSCADLISHTYFHTYGLPVCITRCGNLYGGG-DLNFNRIIPQTIQLVLNGEAPEIRSDGTFVRDYFYIEDAVQAYLLLAEKMEENNLAGEAFNFSNEIQLTVLELVEKILKKMNSNLKPKVLNQGSNEIKHQYLSAEKARKLLNWTPAYTIDEGL 309          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: GALE_METJA (Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii GN=MJ0211 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.510e-11
Identity = 56/168 (33.33%), Postives = 85/168 (50.60%), Query Frame = 1
Query:   16 NPIGVRSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN-IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPVNIGNPGEFTMLELAETVKELINPEIEIKMVENTPDDPRQRKP-----DISKAKELLGWEPKVKLRDGL 501
            +PI   S Y   K V E  +  Y+R +GI+  I R  N YG R +   +  V+S FI + L+ +   +   G QTR F YV D+    +  +  +N   VNIG   E ++ EL + +K     EI  +  E   D PR+ +      DI KA E LGW+P++ L++G+
Sbjct:  132 HPINPLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYSNVYGERQDPKGEAGVISIFIDKMLKNQSPIIFGDGNQTRDFVYVGDVAKANLMALNWKNE-IVNIGTGKETSVNELFDIIKH----EIGFR-GEAIYDKPREGEVYRIYLDIKKA-ESLGWKPEIDLKEGI 292          
The following BLAST results are available for this feature:
BLAST of CF417612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
ARNA_ECOSM8.850e-1227.32Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOL68.850e-1227.32Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOL58.850e-1227.32Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO7I8.850e-1227.32Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO278.850e-1227.32Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_AERHH8.850e-1226.06Bifunctional polymyxin resistance protein arnA OS=... [more]
TGDS_BOVIN1.156e-1130.18dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TG... [more]
RFBB_XANCP1.156e-1127.33dTDP-glucose 4,6-dehydratase OS=Xanthomonas campes... [more]
YFNG_BACSU1.510e-1126.51Putative sugar dehydratase/epimerase yfnG OS=Bacil... [more]
GALE_METJA1.510e-1133.33Putative UDP-glucose 4-epimerase OS=Methanocaldoco... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-542 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417612 ID=CF417612; Name=CF417612; organism=Citrus sinensis; type=EST; length=654bp
TATTGGGGTAATGTCAATCCAATTGGGGTTCGTAGCTGCTATGATGAGGG
AAAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGACAGCATGGGA
TACAAATCCGCATTGCTAGAATCTTTAACACTTATGGACCACGCATGAAT
ATTGATGATGGGCGTGTGGTCAGCAATTTCATTGCTCAGGCACTACGAGG
TGAACCTTTGACTGTCCAAAAGCCTGGAACACAAACTCGCAGTTTCTGTT
ATGTCTCTGATATGGTGGATGGCCTTATTCGCCTCATGGAAGGAGAGAAC
ACTGGCCCAGTCAACATTGGAAACCCAGGTGAATTTACAATGCTTGAGCT
TGCTGAGACAGTGAAGGAGCTTATCAATCCTGAGATTGAGATAAAGATGG
TTGAGAACACTCCTGATGATCCACGACAAAGAAAACCTGACATCTCAAAA
GCAAAGGAATTGCTTGGATGGGAGCCAAAAGTCAAGTTGCGGGATGGACT
TCCTCTTATGGAAGAGGATTTCCGATCAAGGCTTGGAGTTCCCAAAAGGA
ATTAATAAAAACAGCAAGAATTATATCGATACAGGGTGAACACTTGAGTC
TTGGATTCTTTCCACCTAATGTGGGAGTGCTTTAGAATTAGAAACACAAG
TCCT
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