CF417612

Overview
NameCF417612
Unique NameCF417612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: TGDS_HUMAN (dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 50/169 (29.59%), Postives = 82/169 (48.52%), Query Frame = 1
Query:   40 YDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPV-NIGNPGEFTMLELAETVKELI---NPEIEIK-MVENTPDDPR--QRKPDISKAKELLGWEPKVKLRDGLPLMEEDFR 525
            Y   K  AE  +  Y  Q+   + I R  N YGP    +  +V+  FI+         +   G QTR+F Y +D+V+  + +++    G + NIG   E ++++LA+ + +LI   N E E++  V+   D P    R P  S+    LGW PKV  ++G+    E +R
Sbjct:  166 YASSKAAAECFVQSYWEQYKFPVVITRSSNVYGPHQYPE--KVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVEAFLTVLKKGKPGEIYNIGTNFEMSVVQLAKELIQLIKETNSESEMENWVDYVNDRPTNDMRYPMKSEKIHGLGWRPKVPWKEGIKKTIEWYR 332          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_SHIDS (Bifunctional polymyxin resistance protein arnA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=arnA PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 50/183 (27.32%), Postives = 84/183 (45.90%), Query Frame = 1
Query:   31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495
            R  Y   K++ + +++ Y  + G+Q  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D ++ L R++  EN G       +NIGNP  E ++ EL E          ++    P    ++VE++        D   RKP I  A   L WEPK+ +++
Sbjct:  460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 640          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_SHIBS (Bifunctional polymyxin resistance protein arnA OS=Shigella boydii serotype 4 (strain Sb227) GN=arnA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 50/183 (27.32%), Postives = 84/183 (45.90%), Query Frame = 1
Query:   31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495
            R  Y   K++ + +++ Y  + G+Q  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D ++ L R++  EN G       +NIGNP  E ++ EL E          ++    P    ++VE++        D   RKP I  A   L WEPK+ +++
Sbjct:  460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 640          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_SALCH (Bifunctional polymyxin resistance protein arnA OS=Salmonella choleraesuis GN=arnA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 52/199 (26.13%), Postives = 91/199 (45.73%), Query Frame = 1
Query:   31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLM--EGENTGP--VNIGNP-GEFTMLELAETVKELIN---------PEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGVPKR 549
            R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D ++ L R++  EG+      +NIGNP  E ++ ELA  + +  +         P    ++V +         D   RKP I  A+  LGWEP + +RD +    + F   + V +R
Sbjct:  460 RWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLSAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVASRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDFFLRSVDVAER 658          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECOSE (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain SE11) GN=arnA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 50/183 (27.32%), Postives = 84/183 (45.90%), Query Frame = 1
Query:   31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495
            R  Y   K++ + +++ Y  + G+Q  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D ++ L R++  EN G       +NIGNP  E ++ EL E          ++    P    ++VE++        D   RKP I  A   L WEPK+ +++
Sbjct:  460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 640          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECOLI (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain K12) GN=arnA PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 50/183 (27.32%), Postives = 84/183 (45.90%), Query Frame = 1
Query:   31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495
            R  Y   K++ + +++ Y  + G+Q  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D ++ L R++  EN G       +NIGNP  E ++ EL E          ++    P    ++VE++        D   RKP I  A   L WEPK+ +++
Sbjct:  460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 640          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECOLC (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=arnA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 50/183 (27.32%), Postives = 84/183 (45.90%), Query Frame = 1
Query:   31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495
            R  Y   K++ + +++ Y  + G+Q  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D ++ L R++  EN G       +NIGNP  E ++ EL E          ++    P    ++VE++        D   RKP I  A   L WEPK+ +++
Sbjct:  460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 640          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECOHS (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O9:H4 (strain HS) GN=arnA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 50/183 (27.32%), Postives = 84/183 (45.90%), Query Frame = 1
Query:   31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495
            R  Y   K++ + +++ Y  + G+Q  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D ++ L R++  EN G       +NIGNP  E ++ EL E          ++    P    ++VE++        D   RKP I  A   L WEPK+ +++
Sbjct:  460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 640          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECODH (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain K12 / DH10B) GN=arnA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 50/183 (27.32%), Postives = 84/183 (45.90%), Query Frame = 1
Query:   31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495
            R  Y   K++ + +++ Y  + G+Q  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D ++ L R++  EN G       +NIGNP  E ++ EL E          ++    P    ++VE++        D   RKP I  A   L WEPK+ +++
Sbjct:  460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 640          
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECOBW (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain K12 / BW2952) GN=arnA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 50/183 (27.32%), Postives = 84/183 (45.90%), Query Frame = 1
Query:   31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495
            R  Y   K++ + +++ Y  + G+Q  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D ++ L R++  EN G       +NIGNP  E ++ EL E          ++    P    ++VE++        D   RKP I  A   L WEPK+ +++
Sbjct:  460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 640          
The following BLAST results are available for this feature:
BLAST of CF417612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
TGDS_HUMAN3.363e-1129.59dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=... [more]
ARNA_SHIDS3.363e-1127.32Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHIBS3.363e-1127.32Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALCH3.363e-1126.13Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOSE3.363e-1127.32Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOLI3.363e-1127.32Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOLC3.363e-1127.32Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOHS3.363e-1127.32Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECODH3.363e-1127.32Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOBW3.363e-1127.32Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-542 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417612 ID=CF417612; Name=CF417612; organism=Citrus sinensis; type=EST; length=654bp
TATTGGGGTAATGTCAATCCAATTGGGGTTCGTAGCTGCTATGATGAGGG
AAAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGACAGCATGGGA
TACAAATCCGCATTGCTAGAATCTTTAACACTTATGGACCACGCATGAAT
ATTGATGATGGGCGTGTGGTCAGCAATTTCATTGCTCAGGCACTACGAGG
TGAACCTTTGACTGTCCAAAAGCCTGGAACACAAACTCGCAGTTTCTGTT
ATGTCTCTGATATGGTGGATGGCCTTATTCGCCTCATGGAAGGAGAGAAC
ACTGGCCCAGTCAACATTGGAAACCCAGGTGAATTTACAATGCTTGAGCT
TGCTGAGACAGTGAAGGAGCTTATCAATCCTGAGATTGAGATAAAGATGG
TTGAGAACACTCCTGATGATCCACGACAAAGAAAACCTGACATCTCAAAA
GCAAAGGAATTGCTTGGATGGGAGCCAAAAGTCAAGTTGCGGGATGGACT
TCCTCTTATGGAAGAGGATTTCCGATCAAGGCTTGGAGTTCCCAAAAGGA
ATTAATAAAAACAGCAAGAATTATATCGATACAGGGTGAACACTTGAGTC
TTGGATTCTTTCCACCTAATGTGGGAGTGCTTTAGAATTAGAAACACAAG
TCCT
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