CF417612
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: TGDS_HUMAN (dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11 Identity = 50/169 (29.59%), Postives = 82/169 (48.52%), Query Frame = 1 Query: 40 YDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPV-NIGNPGEFTMLELAETVKELI---NPEIEIK-MVENTPDDPR--QRKPDISKAKELLGWEPKVKLRDGLPLMEEDFR 525 Y K AE + Y Q+ + I R N YGP + +V+ FI+ + G QTR+F Y +D+V+ + +++ G + NIG E ++++LA+ + +LI N E E++ V+ D P R P S+ LGW PKV ++G+ E +R Sbjct: 166 YASSKAAAECFVQSYWEQYKFPVVITRSSNVYGPHQYPE--KVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVEAFLTVLKKGKPGEIYNIGTNFEMSVVQLAKELIQLIKETNSESEMENWVDYVNDRPTNDMRYPMKSEKIHGLGWRPKVPWKEGIKKTIEWYR 332
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_SHIDS (Bifunctional polymyxin resistance protein arnA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=arnA PE=3 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11 Identity = 50/183 (27.32%), Postives = 84/183 (45.90%), Query Frame = 1 Query: 31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495 R Y K++ + +++ Y + G+Q + R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++ EN G +NIGNP E ++ EL E ++ P ++VE++ D RKP I A L WEPK+ +++ Sbjct: 460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 640
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_SHIBS (Bifunctional polymyxin resistance protein arnA OS=Shigella boydii serotype 4 (strain Sb227) GN=arnA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11 Identity = 50/183 (27.32%), Postives = 84/183 (45.90%), Query Frame = 1 Query: 31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495 R Y K++ + +++ Y + G+Q + R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++ EN G +NIGNP E ++ EL E ++ P ++VE++ D RKP I A L WEPK+ +++ Sbjct: 460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 640
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_SALCH (Bifunctional polymyxin resistance protein arnA OS=Salmonella choleraesuis GN=arnA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11 Identity = 52/199 (26.13%), Postives = 91/199 (45.73%), Query Frame = 1 Query: 31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLM--EGENTGP--VNIGNP-GEFTMLELAETVKELIN---------PEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGVPKR 549 R Y K++ + +++ Y + G++ + R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++ EG+ +NIGNP E ++ ELA + + + P ++V + D RKP I A+ LGWEP + +RD + + F + V +R Sbjct: 460 RWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLSAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVASRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDFFLRSVDVAER 658
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECOSE (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain SE11) GN=arnA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11 Identity = 50/183 (27.32%), Postives = 84/183 (45.90%), Query Frame = 1 Query: 31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495 R Y K++ + +++ Y + G+Q + R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++ EN G +NIGNP E ++ EL E ++ P ++VE++ D RKP I A L WEPK+ +++ Sbjct: 460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 640
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECOLI (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain K12) GN=arnA PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11 Identity = 50/183 (27.32%), Postives = 84/183 (45.90%), Query Frame = 1 Query: 31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495 R Y K++ + +++ Y + G+Q + R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++ EN G +NIGNP E ++ EL E ++ P ++VE++ D RKP I A L WEPK+ +++ Sbjct: 460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 640
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECOLC (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=arnA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11 Identity = 50/183 (27.32%), Postives = 84/183 (45.90%), Query Frame = 1 Query: 31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495 R Y K++ + +++ Y + G+Q + R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++ EN G +NIGNP E ++ EL E ++ P ++VE++ D RKP I A L WEPK+ +++ Sbjct: 460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 640
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECOHS (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O9:H4 (strain HS) GN=arnA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11 Identity = 50/183 (27.32%), Postives = 84/183 (45.90%), Query Frame = 1 Query: 31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495 R Y K++ + +++ Y + G+Q + R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++ EN G +NIGNP E ++ EL E ++ P ++VE++ D RKP I A L WEPK+ +++ Sbjct: 460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 640
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECODH (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain K12 / DH10B) GN=arnA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11 Identity = 50/183 (27.32%), Postives = 84/183 (45.90%), Query Frame = 1 Query: 31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495 R Y K++ + +++ Y + G+Q + R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++ EN G +NIGNP E ++ EL E ++ P ++VE++ D RKP I A L WEPK+ +++ Sbjct: 460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 640
BLAST of CF417612 vs. ExPASy Swiss-Prot
Match: ARNA_ECOBW (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain K12 / BW2952) GN=arnA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11 Identity = 50/183 (27.32%), Postives = 84/183 (45.90%), Query Frame = 1 Query: 31 RSCYDEGKRVAETLMFDYHRQHGIQIRIARIFNTYGPRMN------IDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGP------VNIGNP-GEFTMLELAE---------TVKELINPEIEIKMVENTP------DDPRQRKPDISKAKELLGWEPKVKLRD 495 R Y K++ + +++ Y + G+Q + R FN GPR++ I R ++ I + G P+ + G Q R F + D ++ L R++ EN G +NIGNP E ++ EL E ++ P ++VE++ D RKP I A L WEPK+ +++ Sbjct: 460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII--ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 640 The following BLAST results are available for this feature:
BLAST of CF417612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 73
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417612 ID=CF417612; Name=CF417612; organism=Citrus sinensis; type=EST; length=654bpback to top |